Ggra5792.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5792.t1
Unique NameGgra5792.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length322
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:278334..279592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5792Ggra5792Gracilaria gracilis GNS1m malegenetig00000935_pilon 278334..279592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5792.t1Ggra5792.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 278334..279592 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5792.t1.start1Ggra5792.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 278334..278336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5792.t1.CDS1Ggra5792.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 278334..278697 +
Ggra5792.t1.CDS2Ggra5792.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000935_pilon 278991..279592 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5792.t1.exon1Ggra5792.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 278334..278697 +
Ggra5792.t1.exon2Ggra5792.t1.exon2Gracilaria gracilis GNS1m maleexontig00000935_pilon 278991..279592 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5792.t1.intron1Ggra5792.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000935_pilon 278698..278990 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5792.t1.stop1Ggra5792.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 279590..279592 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5792.t1 ID=Ggra5792.t1|Name=Ggra5792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=322bp
MKRSSSRSKRSVKQTANPGRTQGGFSSRQGRMRVSLFMNIEGKGMTLVGD
AALHGIGDNLRRELHGEQLDAGLVVIHNVIISRKARTFYPYSVDTLNIPE
YIQDIKGTAIWNEAMLGPVPHTSRGDVQVVGDYIREISASMAASHVSDLS
RSRSREFKRIAKTIPKVDIGHYQMRSVTMDIDLVERPPNQLRVVSHIHVE
NLSKNMKRRLILQSMGTPVVVLQEGMNSNPEELISQGRLSAKCYIVDGMH
RLLALKTLTTGSCARWNNEARGWRCSLYLRRDGKFIELDEVLCLGSVLNE
STGTMLKMRFADKIHSIARKL*
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spliced messenger RNA

>Ggra5792.t1 ID=Ggra5792.t1|Name=Ggra5792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000935_pilon:278334..279592+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCTCCAGCTCTAGGTCGAAACGCAGCGTGAAGCAAACAGCTAA
CCCTGGGCGCACTCAGGGAGGTTTTAGCTCACGCCAGGGCAGGATGCGCG
TGTCGTTATTCATGAATATCGAAGGGAAGGGAATGACGTTGGTTGGGGAT
GCTGCGTTGCACGGTATTGGGGACAATTTGCGGCGTGAGCTGCATGGTGA
ACAATTGGATGCCGGACTGGTGGTCATTCACAATGTGATCATAAGTCGTA
AAGCTCGGACGTTCTACCCGTATTCCGTGGACACTTTGAATATCCCGGAG
TATATTCAGGATATCAAGGGCACTGCCATATGGAACGAGGCAATGTTGGG
ACCTGTTCCTCATACGTCGAGGGGGGATGTACAAGTGGTAGGAGATTATA
TTCGTGAAATATCCGCATCTATGGCCGCTTCTCACGTCAGCGACCTCTCT
CGTTCTAGAAGCAGAGAGTTCAAGCGTATAGCGAAGACGATCCCCAAAGT
GGATATTGGCCATTATCAAATGAGGTCTGTCACGATGGACATTGACCTTG
TGGAGAGGCCCCCTAATCAACTTCGTGTGGTGAGTCATATTCACGTGGAG
AATCTTTCCAAGAACATGAAACGTCGATTGATCTTGCAGTCCATGGGAAC
ACCGGTTGTTGTTCTGCAGGAGGGAATGaactctaaccctgaagagctca
tctcccagggtcgactaagcgctaaatgctacaTAGTCGATGGGATGCAT
CGTCTGCTGGCTTTGAAAACACTAACGACAGGGTCATGTGCTAGATGGAA
CAATGAAGCAAGGGGCTGGAGGTGTAGTTTGTACCTTCGGAGAGATGGAA
AATTCATAGAACTGGATGAAGTTCTATGTCTTGGCTCCGTCTTGAATGAA
TCCACTGGCACTATGCTCAAAATGAGATTTGCCGATAAGATCCATTCCAT
TGCCAGGAAGCTTTGA
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protein sequence of Ggra5792.t1

>Ggra5792.t1 ID=Ggra5792.t1|Name=Ggra5792.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=322bp
MKRSSSRSKRSVKQTANPGRTQGGFSSRQGRMRVSLFMNIEGKGMTLVGD
AALHGIGDNLRRELHGEQLDAGLVVIHNVIISRKARTFYPYSVDTLNIPE
YIQDIKGTAIWNEAMLGPVPHTSRGDVQVVGDYIREISASMAASHVSDLS
RSRSREFKRIAKTIPKVDIGHYQMRSVTMDIDLVERPPNQLRVVSHIHVE
NLSKNMKRRLILQSMGTPVVVLQEGMNSNPEELISQGRLSAKCYIVDGMH
RLLALKTLTTGSCARWNNEARGWRCSLYLRRDGKFIELDEVLCLGSVLNE
STGTMLKMRFADKIHSIARKL*
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mRNA from alignment at tig00000935_pilon:278334..279592+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5792.t1 ID=Ggra5792.t1|Name=Ggra5792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1259bp|location=Sequence derived from alignment at tig00000935_pilon:278334..279592+ (Gracilaria gracilis GNS1m male)
ATGAAGCGCTCCAGCTCTAGGTCGAAACGCAGCGTGAAGCAAACAGCTAA
CCCTGGGCGCACTCAGGGAGGTTTTAGCTCACGCCAGGGCAGGATGCGCG
TGTCGTTATTCATGAATATCGAAGGGAAGGGAATGACGTTGGTTGGGGAT
GCTGCGTTGCACGGTATTGGGGACAATTTGCGGCGTGAGCTGCATGGTGA
ACAATTGGATGCCGGACTGGTGGTCATTCACAATGTGATCATAAGTCGTA
AAGCTCGGACGTTCTACCCGTATTCCGTGGACACTTTGAATATCCCGGAG
TATATTCAGGATATCAAGGGCACTGCCATATGGAACGAGGCAATGTTGGG
ACCTGTTCCTCATAGTACGCCATCTGGAAAGCGTACCTCGAGTAGTCAGA
CGGAGCCAATTGGGAAAAACTCCCGAGCACAATCGTCTTCAGCACGGCTT
AAAAACGTAACGGGTTCACGGGGTCGAGGGTCGGAATCGAACGCGTTGCg
tgcacaggagagcactgcgagtaactctggacgcctccagtcacgaagag
catcCCCAGATGCGGCCTCAACTCCTGCCACACTCCCACTTCCTCCTCAG
ACAGCAGTACAGAGTACTGAAGCTGAAGAAGATGATGACGTTCTCCTTAT
TTCAGAGCGTCGAGGGGGGATGTACAAGTGGTAGGAGATTATATTCGTGA
AATATCCGCATCTATGGCCGCTTCTCACGTCAGCGACCTCTCTCGTTCTA
GAAGCAGAGAGTTCAAGCGTATAGCGAAGACGATCCCCAAAGTGGATATT
GGCCATTATCAAATGAGGTCTGTCACGATGGACATTGACCTTGTGGAGAG
GCCCCCTAATCAACTTCGTGTGGTGAGTCATATTCACGTGGAGAATCTTT
CCAAGAACATGAAACGTCGATTGATCTTGCAGTCCATGGGAACACCGGTT
GTTGTTCTGCAGGAGGGAATGaactctaaccctgaagagctcatctccca
gggtcgactaagcgctaaatgctacaTAGTCGATGGGATGCATCGTCTGC
TGGCTTTGAAAACACTAACGACAGGGTCATGTGCTAGATGGAACAATGAA
GCAAGGGGCTGGAGGTGTAGTTTGTACCTTCGGAGAGATGGAAAATTCAT
AGAACTGGATGAAGTTCTATGTCTTGGCTCCGTCTTGAATGAATCCACTG
GCACTATGCTCAAAATGAGATTTGCCGATAAGATCCATTCCATTGCCAGG
AAGCTTTGA
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Coding sequence (CDS) from alignment at tig00000935_pilon:278334..279592+

>Ggra5792.t1 ID=Ggra5792.t1|Name=Ggra5792.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=966bp|location=Sequence derived from alignment at tig00000935_pilon:278334..279592+ (Gracilaria gracilis GNS1m male)
ATGAAGCGCTCCAGCTCTAGGTCGAAACGCAGCGTGAAGCAAACAGCTAA
CCCTGGGCGCACTCAGGGAGGTTTTAGCTCACGCCAGGGCAGGATGCGCG
TGTCGTTATTCATGAATATCGAAGGGAAGGGAATGACGTTGGTTGGGGAT
GCTGCGTTGCACGGTATTGGGGACAATTTGCGGCGTGAGCTGCATGGTGA
ACAATTGGATGCCGGACTGGTGGTCATTCACAATGTGATCATAAGTCGTA
AAGCTCGGACGTTCTACCCGTATTCCGTGGACACTTTGAATATCCCGGAG
TATATTCAGGATATCAAGGGCACTGCCATATGGAACGAGGCAATGTTGGG
ACCTGTTCCTCATACGTCGAGGGGGGATGTACAAGTGGTAGGAGATTATA
TTCGTGAAATATCCGCATCTATGGCCGCTTCTCACGTCAGCGACCTCTCT
CGTTCTAGAAGCAGAGAGTTCAAGCGTATAGCGAAGACGATCCCCAAAGT
GGATATTGGCCATTATCAAATGAGGTCTGTCACGATGGACATTGACCTTG
TGGAGAGGCCCCCTAATCAACTTCGTGTGGTGAGTCATATTCACGTGGAG
AATCTTTCCAAGAACATGAAACGTCGATTGATCTTGCAGTCCATGGGAAC
ACCGGTTGTTGTTCTGCAGGAGGGAATGaactctaaccctgaagagctca
tctcccagggtcgactaagcgctaaatgctacaTAGTCGATGGGATGCAT
CGTCTGCTGGCTTTGAAAACACTAACGACAGGGTCATGTGCTAGATGGAA
CAATGAAGCAAGGGGCTGGAGGTGTAGTTTGTACCTTCGGAGAGATGGAA
AATTCATAGAACTGGATGAAGTTCTATGTCTTGGCTCCGTCTTGAATGAA
TCCACTGGCACTATGCTCAAAATGAGATTTGCCGATAAGATCCATTCCAT
TGCCAGGAAGCTTTGA
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