Ggra5788.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5788.t1
Unique NameGgra5788.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:247110..247811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5788Ggra5788Gracilaria gracilis GNS1m malegenetig00000935_pilon 247110..247811 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5788.t1.start1Ggra5788.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 247110..247112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5788.t1.CDS1Ggra5788.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 247110..247811 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5788.t1.exon1Ggra5788.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 247110..247811 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5788.t1.stop1Ggra5788.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 247809..247811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5788.t1Ggra5788.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 247110..247811 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5788.t1 ID=Ggra5788.t1|Name=Ggra5788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MSCPRITPRVVLNEENCEIASGPESEEYYESHSRLVAEKRILSPTHVTDR
QFSCGLRLANAGLNGMLETFLNDLKSGQGILLKSLRRNINVLNKWCLTFC
ALIVLSGRSQSPQAYSKLQCPSNDELENMASISGTETQIVLRTLCEKPVR
FSSFSGVTFPSSIYPFLKMHVEHIRGIVLDMTGVEEETGDQPLLLHTRHG
SHLSVGNITNDIKLFMRNIDGELNQCEINVTSC*
back to top

spliced messenger RNA

>Ggra5788.t1 ID=Ggra5788.t1|Name=Ggra5788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000935_pilon:247110..247811+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATGCCCCAGAATCACTCCCCGCGTTGTTCTCAATGAAGAAAATTG
CGAAATCGCTTCTGGCCCCGAGTCAGAAGAGTATTATGAAAGCCATTCGA
GACTCGTCGCAGAAAAAAGAATTCTGAGTCCAACACATGTAACGGACCGA
CAGTTTTCATGCGGTCTTCGTCTTGCTAACGCTGGGTTAAATGGTATGCT
GGAAACGTTCTTGAATGATCTCAAAAGTGGGCAAGGCATTTTGCTGAAGA
GTTTGAGAAGAAACATCAATGTTTTAAACAAATGGTGTCTCACCTTCTGT
GCCTTAATTGTTCTATCTGGAAGAAGCCAGTCCCCACAGGCGTACTCAAA
ACTGCAATGTCCATCAAATGATGAACTAGAAAACATGGCAAGTATTTCCG
GAACCGAAACACAGATTGTTTTGCGAACCCTCTGCGAGAAACCCGTGCGC
TTTTCGTCGTTTTCTGGTGTCACATTCCCTTCCTCAATCTACCCATTCCT
CAAAATGCACGTTGAGCACATAAGAGGAATTGTTTTGGACATGACTGGAG
TAGAGGAGGAAACCGGTGATCAGCCGTTGCTACTTCACACCAGACATGGT
TCGCATTTATCTGTTGGAAATATAACTAACGACATCAAACTGTTTATGAG
GAACATTGATGGCGAGTTGAACCAATGTGAAATCAATGTCACTTCGTGCT
AG
back to top

protein sequence of Ggra5788.t1

>Ggra5788.t1 ID=Ggra5788.t1|Name=Ggra5788.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MSCPRITPRVVLNEENCEIASGPESEEYYESHSRLVAEKRILSPTHVTDR
QFSCGLRLANAGLNGMLETFLNDLKSGQGILLKSLRRNINVLNKWCLTFC
ALIVLSGRSQSPQAYSKLQCPSNDELENMASISGTETQIVLRTLCEKPVR
FSSFSGVTFPSSIYPFLKMHVEHIRGIVLDMTGVEEETGDQPLLLHTRHG
SHLSVGNITNDIKLFMRNIDGELNQCEINVTSC*
back to top

mRNA from alignment at tig00000935_pilon:247110..247811+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5788.t1 ID=Ggra5788.t1|Name=Ggra5788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000935_pilon:247110..247811+ (Gracilaria gracilis GNS1m male)
ATGTCATGCCCCAGAATCACTCCCCGCGTTGTTCTCAATGAAGAAAATTG
CGAAATCGCTTCTGGCCCCGAGTCAGAAGAGTATTATGAAAGCCATTCGA
GACTCGTCGCAGAAAAAAGAATTCTGAGTCCAACACATGTAACGGACCGA
CAGTTTTCATGCGGTCTTCGTCTTGCTAACGCTGGGTTAAATGGTATGCT
GGAAACGTTCTTGAATGATCTCAAAAGTGGGCAAGGCATTTTGCTGAAGA
GTTTGAGAAGAAACATCAATGTTTTAAACAAATGGTGTCTCACCTTCTGT
GCCTTAATTGTTCTATCTGGAAGAAGCCAGTCCCCACAGGCGTACTCAAA
ACTGCAATGTCCATCAAATGATGAACTAGAAAACATGGCAAGTATTTCCG
GAACCGAAACACAGATTGTTTTGCGAACCCTCTGCGAGAAACCCGTGCGC
TTTTCGTCGTTTTCTGGTGTCACATTCCCTTCCTCAATCTACCCATTCCT
CAAAATGCACGTTGAGCACATAAGAGGAATTGTTTTGGACATGACTGGAG
TAGAGGAGGAAACCGGTGATCAGCCGTTGCTACTTCACACCAGACATGGT
TCGCATTTATCTGTTGGAAATATAACTAACGACATCAAACTGTTTATGAG
GAACATTGATGGCGAGTTGAACCAATGTGAAATCAATGTCACTTCGTGCT
AG
back to top

Coding sequence (CDS) from alignment at tig00000935_pilon:247110..247811+

>Ggra5788.t1 ID=Ggra5788.t1|Name=Ggra5788.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000935_pilon:247110..247811+ (Gracilaria gracilis GNS1m male)
ATGTCATGCCCCAGAATCACTCCCCGCGTTGTTCTCAATGAAGAAAATTG
CGAAATCGCTTCTGGCCCCGAGTCAGAAGAGTATTATGAAAGCCATTCGA
GACTCGTCGCAGAAAAAAGAATTCTGAGTCCAACACATGTAACGGACCGA
CAGTTTTCATGCGGTCTTCGTCTTGCTAACGCTGGGTTAAATGGTATGCT
GGAAACGTTCTTGAATGATCTCAAAAGTGGGCAAGGCATTTTGCTGAAGA
GTTTGAGAAGAAACATCAATGTTTTAAACAAATGGTGTCTCACCTTCTGT
GCCTTAATTGTTCTATCTGGAAGAAGCCAGTCCCCACAGGCGTACTCAAA
ACTGCAATGTCCATCAAATGATGAACTAGAAAACATGGCAAGTATTTCCG
GAACCGAAACACAGATTGTTTTGCGAACCCTCTGCGAGAAACCCGTGCGC
TTTTCGTCGTTTTCTGGTGTCACATTCCCTTCCTCAATCTACCCATTCCT
CAAAATGCACGTTGAGCACATAAGAGGAATTGTTTTGGACATGACTGGAG
TAGAGGAGGAAACCGGTGATCAGCCGTTGCTACTTCACACCAGACATGGT
TCGCATTTATCTGTTGGAAATATAACTAACGACATCAAACTGTTTATGAG
GAACATTGATGGCGAGTTGAACCAATGTGAAATCAATGTCACTTCGTGCT
AG
back to top