Ggra5783.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5783.t1
Unique NameGgra5783.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length547
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:235218..236858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003294930.1
PFAMsATG16,WD40
Max annot lvl554915|Amoebozoa
KEGG koko:K17890
KEGG Pathwayko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
GOsGO:0000045,GO:0000421,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016740,GO:0019538,GO:0019776,GO:0019941,GO:0022607,GO:0030163,GO:0030587,GO:0031090,GO:0031154,GO:0032502,GO:0032991,GO:0034274,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051603,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071704,GO:0071840,GO:0090382,GO:0090702,GO:0098588,GO:0098657,GO:0098805,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905037,GO:1990234
Evalue5.59e-11
EggNOG OGsKOG0288@1|root,KOG0288@2759|Eukaryota,3X8KV@554915|Amoebozoa
DescriptionWD domain, G-beta repeat
COG categoryS
BRITEko00000,ko00001,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5783Ggra5783Gracilaria gracilis GNS1m malegenetig00000935_pilon 235218..236858 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5783.t1.stop1Ggra5783.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 235218..235220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5783.t1.CDS1Ggra5783.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 235218..236858 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5783.t1.exon1Ggra5783.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 235218..236858 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5783.t1.start1Ggra5783.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 236856..236858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5783.t1Ggra5783.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 235218..236858 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5783.t1 ID=Ggra5783.t1|Name=Ggra5783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=547bp
MAAAETLVASLRDMITEQTFTQGPSFDDATKGPAASSENDLDLILSRISD
GADVKQPSDVSQPQSNVLSAEDVDPEVISIDMNDLQPLSQATNEIGDTAS
ATPSGIPPNEELLTNRPASFQEPSTNAEMNSQPSLAPTPGRRQQRHSMPV
VTSDSVSPAPSHARSNLLLSVFGQATSAPRQASTIHGSGVHAADNLPSEV
APLAKGEDVMFRVHSPQSLPHTGCSRACIAHSGEVYALASTLDGNRIASG
GDDRVVIVYNSLGTSCASISESPRSITALQFHHSVEQNNAEFNVIFAGSS
DGSIRSLKKHPRRRGKWTLGAVFPLHTQAVRRMVFTNSSSQVLSCSTDRT
IKVSDIENAKRPFAATATSAVLDIDMFESGNGLVISGHKDGYVRMWSLTD
QKTCIGGSKLHTKGICSVACLADGHGVASLGRDNVIRLSDIRMNTVGAVR
EMDGVIDTVSDGHRLSVSGQYASCGMGRQGNVGFWNVESGKLMRRITSQA
SASDADVIDMVTRKLRNPGSVVVPHWTPVGQFVCAHRMRQVSFWGA*
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spliced messenger RNA

>Ggra5783.t1 ID=Ggra5783.t1|Name=Ggra5783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000935_pilon:235218..236858- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTGCCGAAACGCTTGTCGCATCTTTGCGTGATATGATCACCGA
GCAGACTTTCACACAGGGCCCTTCCTTTGACGATGCAACAAAAGGGCCAG
CGGCGTCTTCAGAGAATGACCTGGACTTGATTCTTAGTCGTATTTCGGAT
GGGGCCGATGTGAAGCAGCCTTCAGACGTCTCTCAACCACAATCTAATGT
CCTCTCGGCTGAAGATGTCGATCCAGAAGTAATCTCAATAGATATGAACG
ACCTGCAGCCACTCTCACAAGCAACAAACGAAATTGGAGATACAGCCTCA
GCGACACCTTCTGGTATTCCTCCCAATGAAGAGCTGCTCACAAACAGACC
TGCTTCCTTCCAAGAACCCTCAACTAATGCAGAGATGAATTCTCAGCCAT
CACTGGCCCCAACGCCTGGGCGTCGTCAGCAACGGCACTCAATGCCAGTT
GTTACCTCTGACTCTGTTTCTCCAGCGCCGTCGCACGCTAGATCAAACTT
GCTACTTTCTGTATTTGGTCAGGCCACCAGTGCCCCTCGTCAAGCATCTA
CGATCCATGGTTCTGGCGTTCATGCGGCTGACAATCTTCCTTCCGAAGTT
GCACCACTAGCAAAAGGAGAGGATGTGATGTTTCGAGTTCATAGTCCGCA
GTCTCTACCGCACACGGGATGTTCTCGAGCTTGTATCGCCCACAGTGGAG
AAGTGTACGCTCTTGCATCAACTCTCGATGGGAATAGGATTGCGTCTGGG
GGCGACGACAGAGTTGTGATTGTATACAACAGCTTGGGAACGTCTTGCGC
TTCCATTTCCGAGAGTCCTCGCTCGATAACAGCTCTACAATTCCACCATT
CTGTAGAGCAAAACAATGCGGAATTCAACGTTATCTTTGCAGGCAGCAGT
GATGGTTCTATTCGAAGTTTGAAGAAGCACCCAAGGCGCCGAGGGAAATG
GACTTTGGGCGCTGTTTTCCCTTTGCACACCCAGGCTGTGAGACGCATGG
TCTTCACAAATTCATCAAGCCAAGTGCTATCATGTTCCACAGATCGTACA
ATCAAAGTGTCAGACATTGAGAACGCGAAGAGACCATTTGCAGCCACTGC
CACCTCCGCAGTGCTTGACATCGACATGTTCGAGTCGGGGAACGGACTCG
TAATATCGGGGCATAAAGACGGATATGTGCGTATGTGGTCACTAACAGAC
CAAAAGACTTGCATTGGAGGATCAAAGCTGCATACTAAGGGCATTTGCTC
TGTCGCCTGCCTTGCAGACGGACACGGTGTTGCGTCTCTGGGAAGAGATA
ATGTAATTCGTTTAAGTGATATAAGAATGAACACTGTTGGTGCGGTTCGG
GAGATGGATGGTGTGATTGACACCGTCTCAGATGGGCATCGTTTGTCAGT
GAGTGGCCAGTATGCGTCATGTGGCATGGGACGCCAAGGAAATGTAGGTT
TCTGGAACGTAGAATCGGGAAAGCTCATGCGTCGTATTACATCTCAGGCC
TCAGCATCAGACGCCGATGTCATCGATATGGTGACCCGAAAACTCCGCAA
TCCTGGTTCGGTTGTTGTTCCGCATTGGACACCAGTAGGTCAGTTTGTCT
GCGCACACCGCATGCGACAGGTTTCTTTCTGGGGTGCATAG
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protein sequence of Ggra5783.t1

>Ggra5783.t1 ID=Ggra5783.t1|Name=Ggra5783.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=547bp
MAAAETLVASLRDMITEQTFTQGPSFDDATKGPAASSENDLDLILSRISD
GADVKQPSDVSQPQSNVLSAEDVDPEVISIDMNDLQPLSQATNEIGDTAS
ATPSGIPPNEELLTNRPASFQEPSTNAEMNSQPSLAPTPGRRQQRHSMPV
VTSDSVSPAPSHARSNLLLSVFGQATSAPRQASTIHGSGVHAADNLPSEV
APLAKGEDVMFRVHSPQSLPHTGCSRACIAHSGEVYALASTLDGNRIASG
GDDRVVIVYNSLGTSCASISESPRSITALQFHHSVEQNNAEFNVIFAGSS
DGSIRSLKKHPRRRGKWTLGAVFPLHTQAVRRMVFTNSSSQVLSCSTDRT
IKVSDIENAKRPFAATATSAVLDIDMFESGNGLVISGHKDGYVRMWSLTD
QKTCIGGSKLHTKGICSVACLADGHGVASLGRDNVIRLSDIRMNTVGAVR
EMDGVIDTVSDGHRLSVSGQYASCGMGRQGNVGFWNVESGKLMRRITSQA
SASDADVIDMVTRKLRNPGSVVVPHWTPVGQFVCAHRMRQVSFWGA*
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mRNA from alignment at tig00000935_pilon:235218..236858-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5783.t1 ID=Ggra5783.t1|Name=Ggra5783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000935_pilon:235218..236858- (Gracilaria gracilis GNS1m male)
ATGGCCGCTGCCGAAACGCTTGTCGCATCTTTGCGTGATATGATCACCGA
GCAGACTTTCACACAGGGCCCTTCCTTTGACGATGCAACAAAAGGGCCAG
CGGCGTCTTCAGAGAATGACCTGGACTTGATTCTTAGTCGTATTTCGGAT
GGGGCCGATGTGAAGCAGCCTTCAGACGTCTCTCAACCACAATCTAATGT
CCTCTCGGCTGAAGATGTCGATCCAGAAGTAATCTCAATAGATATGAACG
ACCTGCAGCCACTCTCACAAGCAACAAACGAAATTGGAGATACAGCCTCA
GCGACACCTTCTGGTATTCCTCCCAATGAAGAGCTGCTCACAAACAGACC
TGCTTCCTTCCAAGAACCCTCAACTAATGCAGAGATGAATTCTCAGCCAT
CACTGGCCCCAACGCCTGGGCGTCGTCAGCAACGGCACTCAATGCCAGTT
GTTACCTCTGACTCTGTTTCTCCAGCGCCGTCGCACGCTAGATCAAACTT
GCTACTTTCTGTATTTGGTCAGGCCACCAGTGCCCCTCGTCAAGCATCTA
CGATCCATGGTTCTGGCGTTCATGCGGCTGACAATCTTCCTTCCGAAGTT
GCACCACTAGCAAAAGGAGAGGATGTGATGTTTCGAGTTCATAGTCCGCA
GTCTCTACCGCACACGGGATGTTCTCGAGCTTGTATCGCCCACAGTGGAG
AAGTGTACGCTCTTGCATCAACTCTCGATGGGAATAGGATTGCGTCTGGG
GGCGACGACAGAGTTGTGATTGTATACAACAGCTTGGGAACGTCTTGCGC
TTCCATTTCCGAGAGTCCTCGCTCGATAACAGCTCTACAATTCCACCATT
CTGTAGAGCAAAACAATGCGGAATTCAACGTTATCTTTGCAGGCAGCAGT
GATGGTTCTATTCGAAGTTTGAAGAAGCACCCAAGGCGCCGAGGGAAATG
GACTTTGGGCGCTGTTTTCCCTTTGCACACCCAGGCTGTGAGACGCATGG
TCTTCACAAATTCATCAAGCCAAGTGCTATCATGTTCCACAGATCGTACA
ATCAAAGTGTCAGACATTGAGAACGCGAAGAGACCATTTGCAGCCACTGC
CACCTCCGCAGTGCTTGACATCGACATGTTCGAGTCGGGGAACGGACTCG
TAATATCGGGGCATAAAGACGGATATGTGCGTATGTGGTCACTAACAGAC
CAAAAGACTTGCATTGGAGGATCAAAGCTGCATACTAAGGGCATTTGCTC
TGTCGCCTGCCTTGCAGACGGACACGGTGTTGCGTCTCTGGGAAGAGATA
ATGTAATTCGTTTAAGTGATATAAGAATGAACACTGTTGGTGCGGTTCGG
GAGATGGATGGTGTGATTGACACCGTCTCAGATGGGCATCGTTTGTCAGT
GAGTGGCCAGTATGCGTCATGTGGCATGGGACGCCAAGGAAATGTAGGTT
TCTGGAACGTAGAATCGGGAAAGCTCATGCGTCGTATTACATCTCAGGCC
TCAGCATCAGACGCCGATGTCATCGATATGGTGACCCGAAAACTCCGCAA
TCCTGGTTCGGTTGTTGTTCCGCATTGGACACCAGTAGGTCAGTTTGTCT
GCGCACACCGCATGCGACAGGTTTCTTTCTGGGGTGCATAG
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Coding sequence (CDS) from alignment at tig00000935_pilon:235218..236858-

>Ggra5783.t1 ID=Ggra5783.t1|Name=Ggra5783.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00000935_pilon:235218..236858- (Gracilaria gracilis GNS1m male)
ATGGCCGCTGCCGAAACGCTTGTCGCATCTTTGCGTGATATGATCACCGA
GCAGACTTTCACACAGGGCCCTTCCTTTGACGATGCAACAAAAGGGCCAG
CGGCGTCTTCAGAGAATGACCTGGACTTGATTCTTAGTCGTATTTCGGAT
GGGGCCGATGTGAAGCAGCCTTCAGACGTCTCTCAACCACAATCTAATGT
CCTCTCGGCTGAAGATGTCGATCCAGAAGTAATCTCAATAGATATGAACG
ACCTGCAGCCACTCTCACAAGCAACAAACGAAATTGGAGATACAGCCTCA
GCGACACCTTCTGGTATTCCTCCCAATGAAGAGCTGCTCACAAACAGACC
TGCTTCCTTCCAAGAACCCTCAACTAATGCAGAGATGAATTCTCAGCCAT
CACTGGCCCCAACGCCTGGGCGTCGTCAGCAACGGCACTCAATGCCAGTT
GTTACCTCTGACTCTGTTTCTCCAGCGCCGTCGCACGCTAGATCAAACTT
GCTACTTTCTGTATTTGGTCAGGCCACCAGTGCCCCTCGTCAAGCATCTA
CGATCCATGGTTCTGGCGTTCATGCGGCTGACAATCTTCCTTCCGAAGTT
GCACCACTAGCAAAAGGAGAGGATGTGATGTTTCGAGTTCATAGTCCGCA
GTCTCTACCGCACACGGGATGTTCTCGAGCTTGTATCGCCCACAGTGGAG
AAGTGTACGCTCTTGCATCAACTCTCGATGGGAATAGGATTGCGTCTGGG
GGCGACGACAGAGTTGTGATTGTATACAACAGCTTGGGAACGTCTTGCGC
TTCCATTTCCGAGAGTCCTCGCTCGATAACAGCTCTACAATTCCACCATT
CTGTAGAGCAAAACAATGCGGAATTCAACGTTATCTTTGCAGGCAGCAGT
GATGGTTCTATTCGAAGTTTGAAGAAGCACCCAAGGCGCCGAGGGAAATG
GACTTTGGGCGCTGTTTTCCCTTTGCACACCCAGGCTGTGAGACGCATGG
TCTTCACAAATTCATCAAGCCAAGTGCTATCATGTTCCACAGATCGTACA
ATCAAAGTGTCAGACATTGAGAACGCGAAGAGACCATTTGCAGCCACTGC
CACCTCCGCAGTGCTTGACATCGACATGTTCGAGTCGGGGAACGGACTCG
TAATATCGGGGCATAAAGACGGATATGTGCGTATGTGGTCACTAACAGAC
CAAAAGACTTGCATTGGAGGATCAAAGCTGCATACTAAGGGCATTTGCTC
TGTCGCCTGCCTTGCAGACGGACACGGTGTTGCGTCTCTGGGAAGAGATA
ATGTAATTCGTTTAAGTGATATAAGAATGAACACTGTTGGTGCGGTTCGG
GAGATGGATGGTGTGATTGACACCGTCTCAGATGGGCATCGTTTGTCAGT
GAGTGGCCAGTATGCGTCATGTGGCATGGGACGCCAAGGAAATGTAGGTT
TCTGGAACGTAGAATCGGGAAAGCTCATGCGTCGTATTACATCTCAGGCC
TCAGCATCAGACGCCGATGTCATCGATATGGTGACCCGAAAACTCCGCAA
TCCTGGTTCGGTTGTTGTTCCGCATTGGACACCAGTAGGTCAGTTTGTCT
GCGCACACCGCATGCGACAGGTTTCTTTCTGGGGTGCATAG
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