Ggra5780.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5780.t1
Unique NameGgra5780.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:228104..228622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5780Ggra5780Gracilaria gracilis GNS1m malegenetig00000935_pilon 228104..228622 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5780.t1.stop1Ggra5780.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 228104..228106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5780.t1.CDS1Ggra5780.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 228104..228622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5780.t1.exon1Ggra5780.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 228104..228622 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5780.t1.start1Ggra5780.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 228620..228622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5780.t1Ggra5780.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 228104..228622 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5780.t1 ID=Ggra5780.t1|Name=Ggra5780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MLHAAARFVEEPSDLSDSSHGSEKKLDFKLQSSSDSSDSSRVNFCLRSSS
EHSAGSHEGRQDEGGDESEQIVTLTPRVAQLSALTASLERELSESENETK
QLQQQLQALHAAEAVCSGTDRVSRRRSSKDKVHGAGGRETEVGADGREAA
HGAHAGGEWTVVGGDLEAEEGD*
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spliced messenger RNA

>Ggra5780.t1 ID=Ggra5780.t1|Name=Ggra5780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000935_pilon:228104..228622- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCACGCTGCAGCTCGTTTTGTGGAGGAACCTTCCGATCTGTCCGA
TTCTTCGCACGGCAGTGAGAAAAAGCTGGATTTCAAGTTGCAGTCGTCGT
CGGACAGTTCCGATTCGTCGCGTGTGAACTTTTGCCTTCGATCTAGCAGC
GAGCACTCTGCTGGGTCACACGAGGGTCGGCAAGACGAGGGTGGGGATGA
GAGTGAACAGATTGTGACGTTGACCCCGCGGGTGGCGCAGTTGAGCGCTC
TGACGGCTTCTCTAGAGCGCGAGCTTAGCGAAAGTGAGAATGAAACGAAG
CAGTTGCAACAGCAGCTTCAAGCGCTTCATGCTGCAGAAGCGGTTTGTAG
CGGCACTGATAGGGTGTCGAGGCGGCGCAGCTCAAAAGATAAAGTGCATG
GTGCGGGAGGAAGAGAGACTGAGGTTGGAGCTGATGGAAGAGAGGCAGCG
CACGGCGCACATGCAGGAGGAGAATGGACGGTTGTTGGCGGTGATCTTGA
GGCTGAAGAGGGAGATTGA
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protein sequence of Ggra5780.t1

>Ggra5780.t1 ID=Ggra5780.t1|Name=Ggra5780.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MLHAAARFVEEPSDLSDSSHGSEKKLDFKLQSSSDSSDSSRVNFCLRSSS
EHSAGSHEGRQDEGGDESEQIVTLTPRVAQLSALTASLERELSESENETK
QLQQQLQALHAAEAVCSGTDRVSRRRSSKDKVHGAGGRETEVGADGREAA
HGAHAGGEWTVVGGDLEAEEGD*
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mRNA from alignment at tig00000935_pilon:228104..228622-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5780.t1 ID=Ggra5780.t1|Name=Ggra5780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000935_pilon:228104..228622- (Gracilaria gracilis GNS1m male)
ATGCTTCACGCTGCAGCTCGTTTTGTGGAGGAACCTTCCGATCTGTCCGA
TTCTTCGCACGGCAGTGAGAAAAAGCTGGATTTCAAGTTGCAGTCGTCGT
CGGACAGTTCCGATTCGTCGCGTGTGAACTTTTGCCTTCGATCTAGCAGC
GAGCACTCTGCTGGGTCACACGAGGGTCGGCAAGACGAGGGTGGGGATGA
GAGTGAACAGATTGTGACGTTGACCCCGCGGGTGGCGCAGTTGAGCGCTC
TGACGGCTTCTCTAGAGCGCGAGCTTAGCGAAAGTGAGAATGAAACGAAG
CAGTTGCAACAGCAGCTTCAAGCGCTTCATGCTGCAGAAGCGGTTTGTAG
CGGCACTGATAGGGTGTCGAGGCGGCGCAGCTCAAAAGATAAAGTGCATG
GTGCGGGAGGAAGAGAGACTGAGGTTGGAGCTGATGGAAGAGAGGCAGCG
CACGGCGCACATGCAGGAGGAGAATGGACGGTTGTTGGCGGTGATCTTGA
GGCTGAAGAGGGAGATTGA
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Coding sequence (CDS) from alignment at tig00000935_pilon:228104..228622-

>Ggra5780.t1 ID=Ggra5780.t1|Name=Ggra5780.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000935_pilon:228104..228622- (Gracilaria gracilis GNS1m male)
ATGCTTCACGCTGCAGCTCGTTTTGTGGAGGAACCTTCCGATCTGTCCGA
TTCTTCGCACGGCAGTGAGAAAAAGCTGGATTTCAAGTTGCAGTCGTCGT
CGGACAGTTCCGATTCGTCGCGTGTGAACTTTTGCCTTCGATCTAGCAGC
GAGCACTCTGCTGGGTCACACGAGGGTCGGCAAGACGAGGGTGGGGATGA
GAGTGAACAGATTGTGACGTTGACCCCGCGGGTGGCGCAGTTGAGCGCTC
TGACGGCTTCTCTAGAGCGCGAGCTTAGCGAAAGTGAGAATGAAACGAAG
CAGTTGCAACAGCAGCTTCAAGCGCTTCATGCTGCAGAAGCGGTTTGTAG
CGGCACTGATAGGGTGTCGAGGCGGCGCAGCTCAAAAGATAAAGTGCATG
GTGCGGGAGGAAGAGAGACTGAGGTTGGAGCTGATGGAAGAGAGGCAGCG
CACGGCGCACATGCAGGAGGAGAATGGACGGTTGTTGGCGGTGATCTTGA
GGCTGAAGAGGGAGATTGA
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