Ggra5774.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5774.t1
Unique NameGgra5774.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:157641..158793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog43179.ENSSTOP00000010906
Preferred nameUBA5
PFAMsThiF
Max annot lvl33208|Metazoa
KEGG koko:K12164
GOsGO:0000003,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008340,GO:0008641,GO:0009966,GO:0009987,GO:0010035,GO:0010038,GO:0010259,GO:0010646,GO:0016874,GO:0016877,GO:0019008,GO:0019538,GO:0019899,GO:0023051,GO:0031624,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033143,GO:0033146,GO:0033554,GO:0034976,GO:0036211,GO:0040011,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044390,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051716,GO:0065007,GO:0070647,GO:0071566,GO:0071569,GO:0071704,GO:0097501,GO:1901564,GO:1990564,GO:1990592
Evalue8.73e-106
EggNOG OGsCOG0476@1|root,KOG2336@2759|Eukaryota,38GD7@33154|Opisthokonta,3BFW8@33208|Metazoa,3D0R7@33213|Bilateria,483T9@7711|Chordata,497SW@7742|Vertebrata,3J7SY@40674|Mammalia,35JP9@314146|Euarchontoglires,4PXDK@9989|Rodentia
DescriptionThiF family
COG categoryH
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5774Ggra5774Gracilaria gracilis GNS1m malegenetig00000935_pilon 157641..158793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5774.t1Ggra5774.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 157641..158793 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5774.t1.stop1Ggra5774.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 157641..157643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5774.t1.CDS1Ggra5774.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 157641..158534 -
Ggra5774.t1.CDS2Ggra5774.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000935_pilon 158662..158793 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5774.t1.exon1Ggra5774.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 157641..158534 -
Ggra5774.t1.exon2Ggra5774.t1.exon2Gracilaria gracilis GNS1m maleexontig00000935_pilon 158662..158793 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5774.t1.intron1Ggra5774.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000935_pilon 158535..158661 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5774.t1.start1Ggra5774.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 158791..158793 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5774.t1 ID=Ggra5774.t1|Name=Ggra5774.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MSSNVVSDNPYSRLMALKRMGIVSNCETIRDKAVIVVGVGGVGPMRLAIP
SLQFNPDVEIEVYNYDITSLQNFDRFMKRISNGGKDENSVDLLLSCVDNF
AARNAINAACNELQQTWMGSGVSEDEVSGHIQLIQPGKLDCFSCAPPLVI
ASGIDERTLEREGVCAASLPTTMGMVAGMLVRSCLKYLLGFGSVLIYLGY
SAMKDYFPTMILRPNPACSDSWCVRRQQEMKELKKKEEMEKAVVEPDASE
EQELHPDNHWGITLVDDDSSKEKAADTNVHYDGTKLTEGLRFQYDTSTGN
ENIAEEDKVKDSGADLNDLMAQLKGWFPLDKVCKQKRTEPR*
back to top

spliced messenger RNA

>Ggra5774.t1 ID=Ggra5774.t1|Name=Ggra5774.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000935_pilon:157641..158793- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCTAATGTCGTGTCAGACAATCCATACTCTCGGCTTATGGCACT
CAAGCGCATGGGAATTGTGTCCAACTGCGAGACAATCCGCGACAAGGCAG
TGATCGTTGTTGGAGTAGGCGGCGTGGGACCGATGCGGCTCGCGATACCC
TCCTTGCAATTCAATCCCGATGTTGAAATTGAGGTCTATAACTACGATAT
CACTTCTCTCCAAAACTTTGATCGCTTCATGAAACGCATTTCCAACGGTG
GGAAGGACGAGAATTCTGTTGACCTTCTTCTTTCATGTGTTGATAACTTT
GCAGCACGCAATGCTATCAATGCGGCCTGTAACGAACTCCAACAGACTTG
GATGGGAAGTGGTGTCAGCGAAGATGAAGTCTCTGGTCACATACAGCTCA
TCCAACCAGGAAAGTTAGATTGCTTTAGCTGTGCACCTCCCCTGGTCATT
GCGTCAGGTATCGATGAGCGGACTTTAGAGCGCGAGGGTGTCTGCGCCGC
GTCATTACCAACCACGATGGGCATGGTTGCGGGTATGCTGGTTCGAAGTT
GCCTCAAGTACCTCCTTGGCTTTGGGAGTGTTTTGATCTATCTGGGCTAC
TCGGCAATGAAGGACTATTTTCCGACCATGATATTAAGGCCGAACCCAGC
TTGCAGCGACTCATGGTGTGTTCGGAGACAACAGGAAATGAAGGAGCTGA
AAAAGAAAGAAGAAATGGAAAAGGCAGTTGTCGAACCGGATGCGAGTGAA
GAGCAAGAGTTGCATCCTGATAACCATTGGGGTATCACTTTGGTAGATGA
TGACAGCAGCAAAGAAAAAGCAGCAGATACTAACGTTCATTACGACGGGA
CTAAACTAACAGAAGGGTTGCGATTTCAATACGACACAAGCACAGGCAAT
GAAAACATAGCGGAAGAAGACAAGGTTAAAGATAGTGGCGCTGATCTGAA
TGATTTAATGGCGCAGTTGAAAGGCTGGTTCCCTTTAGACAAGGTTTGCA
AGCAGAAACGGACTGAGCCCCGATGA
back to top

protein sequence of Ggra5774.t1

>Ggra5774.t1 ID=Ggra5774.t1|Name=Ggra5774.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MSSNVVSDNPYSRLMALKRMGIVSNCETIRDKAVIVVGVGGVGPMRLAIP
SLQFNPDVEIEVYNYDITSLQNFDRFMKRISNGGKDENSVDLLLSCVDNF
AARNAINAACNELQQTWMGSGVSEDEVSGHIQLIQPGKLDCFSCAPPLVI
ASGIDERTLEREGVCAASLPTTMGMVAGMLVRSCLKYLLGFGSVLIYLGY
SAMKDYFPTMILRPNPACSDSWCVRRQQEMKELKKKEEMEKAVVEPDASE
EQELHPDNHWGITLVDDDSSKEKAADTNVHYDGTKLTEGLRFQYDTSTGN
ENIAEEDKVKDSGADLNDLMAQLKGWFPLDKVCKQKRTEPR*
back to top

mRNA from alignment at tig00000935_pilon:157641..158793-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5774.t1 ID=Ggra5774.t1|Name=Ggra5774.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1153bp|location=Sequence derived from alignment at tig00000935_pilon:157641..158793- (Gracilaria gracilis GNS1m male)
ATGTCCTCTAATGTCGTGTCAGACAATCCATACTCTCGGCTTATGGCACT
CAAGCGCATGGGAATTGTGTCCAACTGCGAGACAATCCGCGACAAGGCAG
TGATCGTTGTTGGAGTAGGCGGCGTGGGACCGGTCGCTGCAGAAATGCTT
ACAAGATGCGGTATAGGGAACCTGATTCTTTTTGATTACGACAAGGTCGA
ACTCGCCAATATGAATAGACTCTTCTTCAGACTAGAACAATCTGGCTTGA
ACAAAGTAGATGCGGCTCGCGATACCCTCCTTGCAATTCAATCCCGATGT
TGAAATTGAGGTCTATAACTACGATATCACTTCTCTCCAAAACTTTGATC
GCTTCATGAAACGCATTTCCAACGGTGGGAAGGACGAGAATTCTGTTGAC
CTTCTTCTTTCATGTGTTGATAACTTTGCAGCACGCAATGCTATCAATGC
GGCCTGTAACGAACTCCAACAGACTTGGATGGGAAGTGGTGTCAGCGAAG
ATGAAGTCTCTGGTCACATACAGCTCATCCAACCAGGAAAGTTAGATTGC
TTTAGCTGTGCACCTCCCCTGGTCATTGCGTCAGGTATCGATGAGCGGAC
TTTAGAGCGCGAGGGTGTCTGCGCCGCGTCATTACCAACCACGATGGGCA
TGGTTGCGGGTATGCTGGTTCGAAGTTGCCTCAAGTACCTCCTTGGCTTT
GGGAGTGTTTTGATCTATCTGGGCTACTCGGCAATGAAGGACTATTTTCC
GACCATGATATTAAGGCCGAACCCAGCTTGCAGCGACTCATGGTGTGTTC
GGAGACAACAGGAAATGAAGGAGCTGAAAAAGAAAGAAGAAATGGAAAAG
GCAGTTGTCGAACCGGATGCGAGTGAAGAGCAAGAGTTGCATCCTGATAA
CCATTGGGGTATCACTTTGGTAGATGATGACAGCAGCAAAGAAAAAGCAG
CAGATACTAACGTTCATTACGACGGGACTAAACTAACAGAAGGGTTGCGA
TTTCAATACGACACAAGCACAGGCAATGAAAACATAGCGGAAGAAGACAA
GGTTAAAGATAGTGGCGCTGATCTGAATGATTTAATGGCGCAGTTGAAAG
GCTGGTTCCCTTTAGACAAGGTTTGCAAGCAGAAACGGACTGAGCCCCGA
TGA
back to top

Coding sequence (CDS) from alignment at tig00000935_pilon:157641..158793-

>Ggra5774.t1 ID=Ggra5774.t1|Name=Ggra5774.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000935_pilon:157641..158793- (Gracilaria gracilis GNS1m male)
ATGTCCTCTAATGTCGTGTCAGACAATCCATACTCTCGGCTTATGGCACT
CAAGCGCATGGGAATTGTGTCCAACTGCGAGACAATCCGCGACAAGGCAG
TGATCGTTGTTGGAGTAGGCGGCGTGGGACCGATGCGGCTCGCGATACCC
TCCTTGCAATTCAATCCCGATGTTGAAATTGAGGTCTATAACTACGATAT
CACTTCTCTCCAAAACTTTGATCGCTTCATGAAACGCATTTCCAACGGTG
GGAAGGACGAGAATTCTGTTGACCTTCTTCTTTCATGTGTTGATAACTTT
GCAGCACGCAATGCTATCAATGCGGCCTGTAACGAACTCCAACAGACTTG
GATGGGAAGTGGTGTCAGCGAAGATGAAGTCTCTGGTCACATACAGCTCA
TCCAACCAGGAAAGTTAGATTGCTTTAGCTGTGCACCTCCCCTGGTCATT
GCGTCAGGTATCGATGAGCGGACTTTAGAGCGCGAGGGTGTCTGCGCCGC
GTCATTACCAACCACGATGGGCATGGTTGCGGGTATGCTGGTTCGAAGTT
GCCTCAAGTACCTCCTTGGCTTTGGGAGTGTTTTGATCTATCTGGGCTAC
TCGGCAATGAAGGACTATTTTCCGACCATGATATTAAGGCCGAACCCAGC
TTGCAGCGACTCATGGTGTGTTCGGAGACAACAGGAAATGAAGGAGCTGA
AAAAGAAAGAAGAAATGGAAAAGGCAGTTGTCGAACCGGATGCGAGTGAA
GAGCAAGAGTTGCATCCTGATAACCATTGGGGTATCACTTTGGTAGATGA
TGACAGCAGCAAAGAAAAAGCAGCAGATACTAACGTTCATTACGACGGGA
CTAAACTAACAGAAGGGTTGCGATTTCAATACGACACAAGCACAGGCAAT
GAAAACATAGCGGAAGAAGACAAGGTTAAAGATAGTGGCGCTGATCTGAA
TGATTTAATGGCGCAGTTGAAAGGCTGGTTCCCTTTAGACAAGGTTTGCA
AGCAGAAACGGACTGAGCCCCGATGA
back to top