Ggra5756.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5756.t1
Unique Name	Ggra5756.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	765

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000897_pilon	contig	tig00000897_pilon:660234..662528 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	4.74e-72
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5756	Ggra5756	Gracilaria gracilis GNS1m male	gene	tig00000897_pilon 660234..662528 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5756.t1.start1	Ggra5756.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000897_pilon 660234..660236 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5756.t1.CDS1	Ggra5756.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000897_pilon 660234..662528 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5756.t1.exon1	Ggra5756.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000897_pilon 660234..662528 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5756.t1.stop1	Ggra5756.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000897_pilon 662526..662528 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5756.t1	Ggra5756.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000897_pilon 660234..662528 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000897_pilon:660234..662528+
coding sequence from alignment at tig00000897_pilon:660234..662528+

mRNA sequence

>Ggra5756.t1 ID=Ggra5756.t1|Name=Ggra5756.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp
MARAQVCRFYDDGTSGAALRRPIKRLPEFQTSAGLFYSAKARRASASPHL
LHLPRSAVLQITFVLAALLLFFAAHSPRAVQTAASETARINGAQVLNRLG
LGAFAGGERIATTVRTDVPQELVRDGVSLVAVCMGRHETVKKTVPAWLAV
KGVDEIVLVDWSSDPPLDPVVRHIEGGDRIKIIRVEDEDSWVLSRAYNLA
INSTSYANIIRTDCDYEVGQDFVAAHERLIRQAEEETASAGSTEGTEGKH
YYAGNYILARNENEVHLNGAVFIRRKDFLDVGGYDERIQTYGWDDEDLYN
RLGEAGLKKRNISYDHVSHVKHGNAGRAQSGVMFAAVEIDLNSLLLEKLK
PWSKGMDMESKYESDASSSPSPNKIVIRAAVKPKSLKDLVTPTEYEEAWA
EALGRRLHDSYMVPWDIIAAMNIKPKEVLLRRLMQRTENRERAKRAELDA
AGRQGEMVDVDSLPIPRVLICHCMHGLGNRMRALGSCMSFAKATRRELVV
VWEPDSHIEAKFSDLFKTPLVVLEKMPVQWPFAEVEKWDSVWSDFKYHNY
MEMEGDGAVKGEIIRDLPNKHIYYKGAYIMEVENSELTNWEKDNEHLKSL
TPVEDVTGMVAEMEVKGLGSKNVIGLHVRNRTLAKDIQNVDFVQEYGDEA
TKTMDMWRHKSGVHNFMKEIDRMLKEDPSAKFFVATDTFEVIGELQERYG
AERILSFKRSCDERDGQCVRFALADLYALSKCKTLYGSNWSSFTEAAERL
GGVKAKLAGQDFGA*

spliced messenger RNA

>Ggra5756.t1 ID=Ggra5756.t1|Name=Ggra5756.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2295bp|location=Sequence derived from alignment at tig00000897_pilon:660234..662528+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGTGCGCAAGTTTGTCGCTTCTACGATGACGGTACATCCGGTGC
CGCACTCCGCCGTCCGATAAAACGTCTCCCGGAATTTCAGACCTCTGCAG
GTCTTTTCTACTCCGCGAAGGCACGTCGGGCTTCTGCTTCACCCCATCTA
CTACATCTTCCCCGTTCTGCAGTACTTCAGATCACCTTTGTTCTTGCAGC
CCTTCTTCTCTTCTTCGCGGCGCATTCCCCCCGCGCTGTACAGACAGCTG
CTTCAGAAACTGCTCGTATTAATGGTGCACAGGTATTGAATCGGCTTGGT
TTAGGAGCTTTCGCGGGTGGTGAACGTATTGCTACAACCGTGAGGACAGA
TGTACCACAGGAGCTTGTAAGGGATGGTGTTTCTTTAGTCGCTGTTTGTA
TGGGGCGTCATGAAACGGTCAAGAAGACTGTACCAGCTTGGCTAGCTGTT
AAGGGCGTTGATGAGATTGTCCTCGTTGATTGGAGCTCAGATCCACCGCT
TGACCCTGTTGTTAGGCATATCGAAGGGGGTGATCGTATCAAGATTATTC
GTGTCGAAGACGAGGATTCTTGGGTGCTTTCGCGAGCGTATAATTTGGCC
ATTAACTCCACAAGTTATGCTAACATTATTCGAACCGATTGCGATTATGA
GGTTGGACAGGACTTCGTTGCGGCCCACGAACGTCTCATCCGTCAGGCTG
AGGAAGAAACAGCGTCTGCAGGTTCGACAGAAGGCACAGAAGGGAAACAT
TACTACGCAGGGAATTACATTCTCGCTCGCAATGAGAACGAGGTGCACTT
GAACGGTGCTGTGTTCATTCGCCGCAAAGACTTCTTGGACGTCGGGGGCT
ATGATGAGCGTATTCAGACGTATGGATGGGACGACGAGGATTTGTACAAC
CGACTCGGAGAGGCAGGCTTGAAGAAGAGAAACATTTCGTACGACCATGT
ATCACATGTCAAGCACGGAAATGCTGGTCGTGCGCAATCAGGGGTTATGT
TTGCAGCAGTTGAGATAGACCTCAACTCTCTTTTGTTGGAGAAACTGAAA
CCATGGTCTAAAGGCATGGATATGGAAAGTAAGTATGAATCTGATGCATC
TTCTTCGCCATCCCCGAACAAAATAGTAATCCGTGCTGCAGTGAAGCCGA
AATCCCTGAAGGACCTTGTTACCCCGACCGAGTACGAGGAAGCTTGGGCC
GAAGCATTGGGGCGTCGTTTGCATGACAGCTATATGGTTCCGTGGGATAT
CATTGCTGCAATGAATATCAAACCGAAGGAAGTTTTGCTTCGTCGCTTAA
TGCAGAGGACCGAGAATCGGGAGAGGGCGAAACGTGCCGAGTTGGATGCC
GCTGGCCGCCAAGGTGAAATGGTTGATGTCGATAGTCTGCCAATCCCTCG
AGTGCTGATATGCCACTGCATGCACGGGCTTGGTAACCGAATGCGTGCGC
TTGGAAGTTGCATGTCCTTTGCCAAAGCTACAAGAAGAGAACTGGTTGTT
GTCTGGGAACCTGACAGTCACATTGAGGCAAAGTTCTCCGATTTGTTCAA
GACGCCGTTGGTTGTGCTTGAGAAGATGCCAGTTCAGTGGCCGTTTGCCG
AGGTGGAGAAGTGGGATTCCGTTTGGTCAGACTTCAAATACCATAATTAT
ATGGAAATGGAAGGCGATGGTGCTGTGAAAGGTGAAATCATTCGTGATCT
ACCAAACAAACACATTTACTACAAGGGTGCGTACATTATGGAAGTTGAGA
ACAGCGAGTTAACAAACTGGGAGAAGGATAACGAGCACCTAAAATCTCTC
ACACCAGTTGAAGATGTTACGGGCATGGTTGCTGAAATGGAAGTGAAGGG
ACTTGGGTCAAAGAACGTGATCGGCCTACATGTTCGGAACCGAACCCTGG
CCAAGGACATACAAAATGTTGACTTTGTACAAGAGTACGGTGATGAAGCG
ACGAAGACAATGGATATGTGGCGTCACAAGAGCGGTGTGCACAACTTCAT
GAAGGAGATAGACAGAATGCTGAAGGAGGATCCATCTGCAAAGTTTTTCG
TCGCCACTGATACCTTTGAGGTGATTGGGGAATTACAAGAGAGATATGGC
GCTGAACGGATTCTTTCATTTAAGCGGTCCTGTGATGAGCGTGATGGACA
ATGTGTGAGGTTTGCTCTCGCTGACCTGTATGCTTTATCTAAGTGTAAGA
CACTCTATGGATCAAACTGGAGCTCATTCACAGAAGCTGCTGAAAGGTTA
GGGGGAGTGAAGGCGAAACTGGCAGGGCAGGATTTTGGAGCTTAG

protein sequence of Ggra5756.t1

>Ggra5756.t1 ID=Ggra5756.t1|Name=Ggra5756.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=765bp
MARAQVCRFYDDGTSGAALRRPIKRLPEFQTSAGLFYSAKARRASASPHL
LHLPRSAVLQITFVLAALLLFFAAHSPRAVQTAASETARINGAQVLNRLG
LGAFAGGERIATTVRTDVPQELVRDGVSLVAVCMGRHETVKKTVPAWLAV
KGVDEIVLVDWSSDPPLDPVVRHIEGGDRIKIIRVEDEDSWVLSRAYNLA
INSTSYANIIRTDCDYEVGQDFVAAHERLIRQAEEETASAGSTEGTEGKH
YYAGNYILARNENEVHLNGAVFIRRKDFLDVGGYDERIQTYGWDDEDLYN
RLGEAGLKKRNISYDHVSHVKHGNAGRAQSGVMFAAVEIDLNSLLLEKLK
PWSKGMDMESKYESDASSSPSPNKIVIRAAVKPKSLKDLVTPTEYEEAWA
EALGRRLHDSYMVPWDIIAAMNIKPKEVLLRRLMQRTENRERAKRAELDA
AGRQGEMVDVDSLPIPRVLICHCMHGLGNRMRALGSCMSFAKATRRELVV
VWEPDSHIEAKFSDLFKTPLVVLEKMPVQWPFAEVEKWDSVWSDFKYHNY
MEMEGDGAVKGEIIRDLPNKHIYYKGAYIMEVENSELTNWEKDNEHLKSL
TPVEDVTGMVAEMEVKGLGSKNVIGLHVRNRTLAKDIQNVDFVQEYGDEA
TKTMDMWRHKSGVHNFMKEIDRMLKEDPSAKFFVATDTFEVIGELQERYG
AERILSFKRSCDERDGQCVRFALADLYALSKCKTLYGSNWSSFTEAAERL
GGVKAKLAGQDFGA*

mRNA from alignment at tig00000897_pilon:660234..662528+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5756.t1 ID=Ggra5756.t1|Name=Ggra5756.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2295bp|location=Sequence derived from alignment at tig00000897_pilon:660234..662528+ (Gracilaria gracilis GNS1m male)
ATGGCTCGTGCGCAAGTTTGTCGCTTCTACGATGACGGTACATCCGGTGC
CGCACTCCGCCGTCCGATAAAACGTCTCCCGGAATTTCAGACCTCTGCAG
GTCTTTTCTACTCCGCGAAGGCACGTCGGGCTTCTGCTTCACCCCATCTA
CTACATCTTCCCCGTTCTGCAGTACTTCAGATCACCTTTGTTCTTGCAGC
CCTTCTTCTCTTCTTCGCGGCGCATTCCCCCCGCGCTGTACAGACAGCTG
CTTCAGAAACTGCTCGTATTAATGGTGCACAGGTATTGAATCGGCTTGGT
TTAGGAGCTTTCGCGGGTGGTGAACGTATTGCTACAACCGTGAGGACAGA
TGTACCACAGGAGCTTGTAAGGGATGGTGTTTCTTTAGTCGCTGTTTGTA
TGGGGCGTCATGAAACGGTCAAGAAGACTGTACCAGCTTGGCTAGCTGTT
AAGGGCGTTGATGAGATTGTCCTCGTTGATTGGAGCTCAGATCCACCGCT
TGACCCTGTTGTTAGGCATATCGAAGGGGGTGATCGTATCAAGATTATTC
GTGTCGAAGACGAGGATTCTTGGGTGCTTTCGCGAGCGTATAATTTGGCC
ATTAACTCCACAAGTTATGCTAACATTATTCGAACCGATTGCGATTATGA
GGTTGGACAGGACTTCGTTGCGGCCCACGAACGTCTCATCCGTCAGGCTG
AGGAAGAAACAGCGTCTGCAGGTTCGACAGAAGGCACAGAAGGGAAACAT
TACTACGCAGGGAATTACATTCTCGCTCGCAATGAGAACGAGGTGCACTT
GAACGGTGCTGTGTTCATTCGCCGCAAAGACTTCTTGGACGTCGGGGGCT
ATGATGAGCGTATTCAGACGTATGGATGGGACGACGAGGATTTGTACAAC
CGACTCGGAGAGGCAGGCTTGAAGAAGAGAAACATTTCGTACGACCATGT
ATCACATGTCAAGCACGGAAATGCTGGTCGTGCGCAATCAGGGGTTATGT
TTGCAGCAGTTGAGATAGACCTCAACTCTCTTTTGTTGGAGAAACTGAAA
CCATGGTCTAAAGGCATGGATATGGAAAGTAAGTATGAATCTGATGCATC
TTCTTCGCCATCCCCGAACAAAATAGTAATCCGTGCTGCAGTGAAGCCGA
AATCCCTGAAGGACCTTGTTACCCCGACCGAGTACGAGGAAGCTTGGGCC
GAAGCATTGGGGCGTCGTTTGCATGACAGCTATATGGTTCCGTGGGATAT
CATTGCTGCAATGAATATCAAACCGAAGGAAGTTTTGCTTCGTCGCTTAA
TGCAGAGGACCGAGAATCGGGAGAGGGCGAAACGTGCCGAGTTGGATGCC
GCTGGCCGCCAAGGTGAAATGGTTGATGTCGATAGTCTGCCAATCCCTCG
AGTGCTGATATGCCACTGCATGCACGGGCTTGGTAACCGAATGCGTGCGC
TTGGAAGTTGCATGTCCTTTGCCAAAGCTACAAGAAGAGAACTGGTTGTT
GTCTGGGAACCTGACAGTCACATTGAGGCAAAGTTCTCCGATTTGTTCAA
GACGCCGTTGGTTGTGCTTGAGAAGATGCCAGTTCAGTGGCCGTTTGCCG
AGGTGGAGAAGTGGGATTCCGTTTGGTCAGACTTCAAATACCATAATTAT
ATGGAAATGGAAGGCGATGGTGCTGTGAAAGGTGAAATCATTCGTGATCT
ACCAAACAAACACATTTACTACAAGGGTGCGTACATTATGGAAGTTGAGA
ACAGCGAGTTAACAAACTGGGAGAAGGATAACGAGCACCTAAAATCTCTC
ACACCAGTTGAAGATGTTACGGGCATGGTTGCTGAAATGGAAGTGAAGGG
ACTTGGGTCAAAGAACGTGATCGGCCTACATGTTCGGAACCGAACCCTGG
CCAAGGACATACAAAATGTTGACTTTGTACAAGAGTACGGTGATGAAGCG
ACGAAGACAATGGATATGTGGCGTCACAAGAGCGGTGTGCACAACTTCAT
GAAGGAGATAGACAGAATGCTGAAGGAGGATCCATCTGCAAAGTTTTTCG
TCGCCACTGATACCTTTGAGGTGATTGGGGAATTACAAGAGAGATATGGC
GCTGAACGGATTCTTTCATTTAAGCGGTCCTGTGATGAGCGTGATGGACA
ATGTGTGAGGTTTGCTCTCGCTGACCTGTATGCTTTATCTAAGTGTAAGA
CACTCTATGGATCAAACTGGAGCTCATTCACAGAAGCTGCTGAAAGGTTA
GGGGGAGTGAAGGCGAAACTGGCAGGGCAGGATTTTGGAGCTTAG

Coding sequence (CDS) from alignment at tig00000897_pilon:660234..662528+

>Ggra5756.t1 ID=Ggra5756.t1|Name=Ggra5756.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2295bp|location=Sequence derived from alignment at tig00000897_pilon:660234..662528+ (Gracilaria gracilis GNS1m male)
ATGGCTCGTGCGCAAGTTTGTCGCTTCTACGATGACGGTACATCCGGTGC
CGCACTCCGCCGTCCGATAAAACGTCTCCCGGAATTTCAGACCTCTGCAG
GTCTTTTCTACTCCGCGAAGGCACGTCGGGCTTCTGCTTCACCCCATCTA
CTACATCTTCCCCGTTCTGCAGTACTTCAGATCACCTTTGTTCTTGCAGC
CCTTCTTCTCTTCTTCGCGGCGCATTCCCCCCGCGCTGTACAGACAGCTG
CTTCAGAAACTGCTCGTATTAATGGTGCACAGGTATTGAATCGGCTTGGT
TTAGGAGCTTTCGCGGGTGGTGAACGTATTGCTACAACCGTGAGGACAGA
TGTACCACAGGAGCTTGTAAGGGATGGTGTTTCTTTAGTCGCTGTTTGTA
TGGGGCGTCATGAAACGGTCAAGAAGACTGTACCAGCTTGGCTAGCTGTT
AAGGGCGTTGATGAGATTGTCCTCGTTGATTGGAGCTCAGATCCACCGCT
TGACCCTGTTGTTAGGCATATCGAAGGGGGTGATCGTATCAAGATTATTC
GTGTCGAAGACGAGGATTCTTGGGTGCTTTCGCGAGCGTATAATTTGGCC
ATTAACTCCACAAGTTATGCTAACATTATTCGAACCGATTGCGATTATGA
GGTTGGACAGGACTTCGTTGCGGCCCACGAACGTCTCATCCGTCAGGCTG
AGGAAGAAACAGCGTCTGCAGGTTCGACAGAAGGCACAGAAGGGAAACAT
TACTACGCAGGGAATTACATTCTCGCTCGCAATGAGAACGAGGTGCACTT
GAACGGTGCTGTGTTCATTCGCCGCAAAGACTTCTTGGACGTCGGGGGCT
ATGATGAGCGTATTCAGACGTATGGATGGGACGACGAGGATTTGTACAAC
CGACTCGGAGAGGCAGGCTTGAAGAAGAGAAACATTTCGTACGACCATGT
ATCACATGTCAAGCACGGAAATGCTGGTCGTGCGCAATCAGGGGTTATGT
TTGCAGCAGTTGAGATAGACCTCAACTCTCTTTTGTTGGAGAAACTGAAA
CCATGGTCTAAAGGCATGGATATGGAAAGTAAGTATGAATCTGATGCATC
TTCTTCGCCATCCCCGAACAAAATAGTAATCCGTGCTGCAGTGAAGCCGA
AATCCCTGAAGGACCTTGTTACCCCGACCGAGTACGAGGAAGCTTGGGCC
GAAGCATTGGGGCGTCGTTTGCATGACAGCTATATGGTTCCGTGGGATAT
CATTGCTGCAATGAATATCAAACCGAAGGAAGTTTTGCTTCGTCGCTTAA
TGCAGAGGACCGAGAATCGGGAGAGGGCGAAACGTGCCGAGTTGGATGCC
GCTGGCCGCCAAGGTGAAATGGTTGATGTCGATAGTCTGCCAATCCCTCG
AGTGCTGATATGCCACTGCATGCACGGGCTTGGTAACCGAATGCGTGCGC
TTGGAAGTTGCATGTCCTTTGCCAAAGCTACAAGAAGAGAACTGGTTGTT
GTCTGGGAACCTGACAGTCACATTGAGGCAAAGTTCTCCGATTTGTTCAA
GACGCCGTTGGTTGTGCTTGAGAAGATGCCAGTTCAGTGGCCGTTTGCCG
AGGTGGAGAAGTGGGATTCCGTTTGGTCAGACTTCAAATACCATAATTAT
ATGGAAATGGAAGGCGATGGTGCTGTGAAAGGTGAAATCATTCGTGATCT
ACCAAACAAACACATTTACTACAAGGGTGCGTACATTATGGAAGTTGAGA
ACAGCGAGTTAACAAACTGGGAGAAGGATAACGAGCACCTAAAATCTCTC
ACACCAGTTGAAGATGTTACGGGCATGGTTGCTGAAATGGAAGTGAAGGG
ACTTGGGTCAAAGAACGTGATCGGCCTACATGTTCGGAACCGAACCCTGG
CCAAGGACATACAAAATGTTGACTTTGTACAAGAGTACGGTGATGAAGCG
ACGAAGACAATGGATATGTGGCGTCACAAGAGCGGTGTGCACAACTTCAT
GAAGGAGATAGACAGAATGCTGAAGGAGGATCCATCTGCAAAGTTTTTCG
TCGCCACTGATACCTTTGAGGTGATTGGGGAATTACAAGAGAGATATGGC
GCTGAACGGATTCTTTCATTTAAGCGGTCCTGTGATGAGCGTGATGGACA
ATGTGTGAGGTTTGCTCTCGCTGACCTGTATGCTTTATCTAAGTGTAAGA
CACTCTATGGATCAAACTGGAGCTCATTCACAGAAGCTGCTGAAAGGTTA
GGGGGAGTGAAGGCGAAACTGGCAGGGCAGGATTTTGGAGCTTAG