Ggra5745.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5745.t1
Unique NameGgra5745.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:503177..504196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5745Ggra5745Gracilaria gracilis GNS1m malegenetig00000897_pilon 503177..504196 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5745.t1.stop1Ggra5745.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 503177..503179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5745.t1.CDS1Ggra5745.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 503177..504196 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5745.t1.exon1Ggra5745.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 503177..504196 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5745.t1.start1Ggra5745.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 504194..504196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5745.t1Ggra5745.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 503177..504196 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5745.t1 ID=Ggra5745.t1|Name=Ggra5745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=340bp
MLVTDLELRHAKDSISHFEHSILQARQNKFNLARYRLNMKLPHASSFPSA
DEVLVATLDMLESTWKRLAKLQVDFEHFKLQPFDREFEVHQHAIIRIFFW
KRREPAHPIGHLVLSLTDLRMAANERLLLSIQGLPPSTNIAEVSVGWITP
KIEKIILNVQAYVNKKKGWPFSNARLYYVLYTWESEGNRRWKALYRSEIL
TKMAIDPHSKAPMNFTGATIKMHGTKADENQTRPYRLEFFHYKATPLGHK
MLACSVFTLQQLRQMLVLNGRLDLSGLRAAPWTSHATTPPSTFTPRLCLL
ITSSDSTRVSLLLHITHQSFPFGTLHASFWNAARVLSES*
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spliced messenger RNA

>Ggra5745.t1 ID=Ggra5745.t1|Name=Ggra5745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000897_pilon:503177..504196- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTCACCGACCTAGAGCTCCGCCATGCCAAGGACAGTATCTCTCA
CTTCGAGCACTCCATACTGCAGGCGCGCCAGAACAAGTTCAATCTGGCAC
GCTATCGTCTCAACATGAAGCTGCCGCACGCTTCGTCGTTTCCCAGCGCC
GACGAGGTTCTAGTTGCTACGCTGGATATGTTGGAGTCCACGTGGAAGCG
ACTAGCCAAGTTGCAGGTAGACTTTGAGCATTTCAAACTCCAACCGTTTG
ATCGTGAATTTGAAGTCCATCAGCATGCAATCATTCGTATATTTTTCTGG
AAGAGGCGCGAACCTGCCCATCCCATTGGCCACTTGGTGCTCTCGTTGAC
AGATTTGCGCATGGCAGCTAATGAGAGATTGTTATTATCCATCCAAGGAC
TTCCACCGTCGACCAACATCGCCGAAGTTTCCGTTGGCTGGATTACCCCA
AAGATTGAAAAGATTATTCTTAATGTGCAGGCATACGTCAACAAGAAGAA
GGGATGGCCGTTTTCGAATGCCAGATTGTATTATGTGCTGTATACATGGG
AGAGCGAAGGCAATCGAAGATGGAAAGCATTATACCGTTCGGAGATATTG
ACAAAGATGGCCATTGATCCCCATTCCAAAGCACCCATGAATTTTACTGG
CGCCACGATAAAGATGCACGGCACAAAGGCCGATGAGAACCAAACCAGAC
CCTATCGTCTGGAATTCTTTCATTACAAGGCAACCCCTCTGGGCCACAAG
ATGCTTGCATGTTCCGTCTTTACCCTGCAGCAGTTGAGACAAATGTTAGT
CCTTAACGGCCGACTTGATCTCTCCGGGCTGCGCGCAGCTCCATGGACTT
CACACGCCACCACTCCTCCATCGACTTTCACTCCCCGCCTGTGTTTGCTT
ATCACTTCCAGCGATAGCACACGCGTTTCCTTGCTACTGCACATCACGCA
CCAATCATTTCCTTTCGGAACGCTGCATGCGTCCTTTTGGAACGCTGCAC
GCGTCCTTTCGGAATCGTAA
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protein sequence of Ggra5745.t1

>Ggra5745.t1 ID=Ggra5745.t1|Name=Ggra5745.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MLVTDLELRHAKDSISHFEHSILQARQNKFNLARYRLNMKLPHASSFPSA
DEVLVATLDMLESTWKRLAKLQVDFEHFKLQPFDREFEVHQHAIIRIFFW
KRREPAHPIGHLVLSLTDLRMAANERLLLSIQGLPPSTNIAEVSVGWITP
KIEKIILNVQAYVNKKKGWPFSNARLYYVLYTWESEGNRRWKALYRSEIL
TKMAIDPHSKAPMNFTGATIKMHGTKADENQTRPYRLEFFHYKATPLGHK
MLACSVFTLQQLRQMLVLNGRLDLSGLRAAPWTSHATTPPSTFTPRLCLL
ITSSDSTRVSLLLHITHQSFPFGTLHASFWNAARVLSES*
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mRNA from alignment at tig00000897_pilon:503177..504196-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5745.t1 ID=Ggra5745.t1|Name=Ggra5745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000897_pilon:503177..504196- (Gracilaria gracilis GNS1m male)
ATGTTGGTCACCGACCTAGAGCTCCGCCATGCCAAGGACAGTATCTCTCA
CTTCGAGCACTCCATACTGCAGGCGCGCCAGAACAAGTTCAATCTGGCAC
GCTATCGTCTCAACATGAAGCTGCCGCACGCTTCGTCGTTTCCCAGCGCC
GACGAGGTTCTAGTTGCTACGCTGGATATGTTGGAGTCCACGTGGAAGCG
ACTAGCCAAGTTGCAGGTAGACTTTGAGCATTTCAAACTCCAACCGTTTG
ATCGTGAATTTGAAGTCCATCAGCATGCAATCATTCGTATATTTTTCTGG
AAGAGGCGCGAACCTGCCCATCCCATTGGCCACTTGGTGCTCTCGTTGAC
AGATTTGCGCATGGCAGCTAATGAGAGATTGTTATTATCCATCCAAGGAC
TTCCACCGTCGACCAACATCGCCGAAGTTTCCGTTGGCTGGATTACCCCA
AAGATTGAAAAGATTATTCTTAATGTGCAGGCATACGTCAACAAGAAGAA
GGGATGGCCGTTTTCGAATGCCAGATTGTATTATGTGCTGTATACATGGG
AGAGCGAAGGCAATCGAAGATGGAAAGCATTATACCGTTCGGAGATATTG
ACAAAGATGGCCATTGATCCCCATTCCAAAGCACCCATGAATTTTACTGG
CGCCACGATAAAGATGCACGGCACAAAGGCCGATGAGAACCAAACCAGAC
CCTATCGTCTGGAATTCTTTCATTACAAGGCAACCCCTCTGGGCCACAAG
ATGCTTGCATGTTCCGTCTTTACCCTGCAGCAGTTGAGACAAATGTTAGT
CCTTAACGGCCGACTTGATCTCTCCGGGCTGCGCGCAGCTCCATGGACTT
CACACGCCACCACTCCTCCATCGACTTTCACTCCCCGCCTGTGTTTGCTT
ATCACTTCCAGCGATAGCACACGCGTTTCCTTGCTACTGCACATCACGCA
CCAATCATTTCCTTTCGGAACGCTGCATGCGTCCTTTTGGAACGCTGCAC
GCGTCCTTTCGGAATCGTAA
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Coding sequence (CDS) from alignment at tig00000897_pilon:503177..504196-

>Ggra5745.t1 ID=Ggra5745.t1|Name=Ggra5745.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000897_pilon:503177..504196- (Gracilaria gracilis GNS1m male)
ATGTTGGTCACCGACCTAGAGCTCCGCCATGCCAAGGACAGTATCTCTCA
CTTCGAGCACTCCATACTGCAGGCGCGCCAGAACAAGTTCAATCTGGCAC
GCTATCGTCTCAACATGAAGCTGCCGCACGCTTCGTCGTTTCCCAGCGCC
GACGAGGTTCTAGTTGCTACGCTGGATATGTTGGAGTCCACGTGGAAGCG
ACTAGCCAAGTTGCAGGTAGACTTTGAGCATTTCAAACTCCAACCGTTTG
ATCGTGAATTTGAAGTCCATCAGCATGCAATCATTCGTATATTTTTCTGG
AAGAGGCGCGAACCTGCCCATCCCATTGGCCACTTGGTGCTCTCGTTGAC
AGATTTGCGCATGGCAGCTAATGAGAGATTGTTATTATCCATCCAAGGAC
TTCCACCGTCGACCAACATCGCCGAAGTTTCCGTTGGCTGGATTACCCCA
AAGATTGAAAAGATTATTCTTAATGTGCAGGCATACGTCAACAAGAAGAA
GGGATGGCCGTTTTCGAATGCCAGATTGTATTATGTGCTGTATACATGGG
AGAGCGAAGGCAATCGAAGATGGAAAGCATTATACCGTTCGGAGATATTG
ACAAAGATGGCCATTGATCCCCATTCCAAAGCACCCATGAATTTTACTGG
CGCCACGATAAAGATGCACGGCACAAAGGCCGATGAGAACCAAACCAGAC
CCTATCGTCTGGAATTCTTTCATTACAAGGCAACCCCTCTGGGCCACAAG
ATGCTTGCATGTTCCGTCTTTACCCTGCAGCAGTTGAGACAAATGTTAGT
CCTTAACGGCCGACTTGATCTCTCCGGGCTGCGCGCAGCTCCATGGACTT
CACACGCCACCACTCCTCCATCGACTTTCACTCCCCGCCTGTGTTTGCTT
ATCACTTCCAGCGATAGCACACGCGTTTCCTTGCTACTGCACATCACGCA
CCAATCATTTCCTTTCGGAACGCTGCATGCGTCCTTTTGGAACGCTGCAC
GCGTCCTTTCGGAATCGTAA
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