Ggra5739.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5739.t1
Unique NameGgra5739.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:451754..452515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5739Ggra5739Gracilaria gracilis GNS1m malegenetig00000897_pilon 451754..452515 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5739.t1.stop1Ggra5739.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 451754..451756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5739.t1.CDS1Ggra5739.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 451754..452515 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5739.t1.exon1Ggra5739.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 451754..452515 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5739.t1.start1Ggra5739.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 452513..452515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5739.t1Ggra5739.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 451754..452515 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5739.t1 ID=Ggra5739.t1|Name=Ggra5739.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=254bp
MGVPVSILSFISARCAGLADGVDKIDIGSQRVVRSEHDVGILQNALRDIA
AVTKTLEDDDVESVLDVLFNLVLSLQKQCRCDDDEGSPRVWDLVPLNIVL
ANRVYVVYTRRAYETARRLVAMGDTSSVRAASAIDALGETGFVGTWSAAR
LLGAGPWAVGVESKALLELDLRGVSLVTQYKLHELDSSTKPHLIAQQASG
GCGCVWRWWAWIIVVTDADGASEKVEQRKRLDRKLLALGSHTEKRVVAAL
LRE*
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spliced messenger RNA

>Ggra5739.t1 ID=Ggra5739.t1|Name=Ggra5739.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000897_pilon:451754..452515- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTTCCCGTCTCAATACTTTCTTTCATATCGGCGAGATGTGCGGG
GCTTGCGGATGGAGTTGACAAAATTGACATCGGCTCTCAACGCGTCGTAC
GTAGTGAGCACGACGTCGGCATTTTGCAAAACGCGCTGCGGGATATAGCC
GCTGTTACGAAGACCTTGGAAGACGATGATGTTGAGAGCGTGCTTGACGT
GCTTTTCAATCTCGTTCTTTCATTGCAAAAGCAGTGCAGATGTGATGACG
ATGAGGGTAGCCCGAGAGTTTGGGATTTGGTGCCTTTGAACATCGTGCTT
GCAAATAGAGTATATGTGGTGTATACAAGAAGGGCATATGAAACCGCCAG
GCGCCTGGTGGCCATGGGTGACACAAGCTCTGTGCGCGCTGCGTCCGCAA
TCGACGCATTGGGGGAGACGGGGTTTGTTGGAACTTGGAGCGCTGCACGG
CTCTTGGGAGCAGGACCATGGGCTGTCGGGGTTGAAAGCAAGGCGCTTCT
TGAACTTGATCTCAGAGGCGTTTCTCTTGTTACACAGTACAAGTTACATG
AGCTCGACAGTTCTACCAAGCCCCATCTCATCGCACAGCAGGCCTCCGGG
GGGTGTGGGTGTGTGTGGCGGTGGTGGGCGTGGATAATTGTGGTGACCGA
CGCAGATGGCGCCTCCGAAAAGGTCGAGCAGCGCAAACGGCTCGATAGAA
AGCTGCTGGCGCTGGGCAGCCATACAGAAAAACGGGTCGTGGCAGCGCTG
CTCCGCGAATGA
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protein sequence of Ggra5739.t1

>Ggra5739.t1 ID=Ggra5739.t1|Name=Ggra5739.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=254bp
MGVPVSILSFISARCAGLADGVDKIDIGSQRVVRSEHDVGILQNALRDIA
AVTKTLEDDDVESVLDVLFNLVLSLQKQCRCDDDEGSPRVWDLVPLNIVL
ANRVYVVYTRRAYETARRLVAMGDTSSVRAASAIDALGETGFVGTWSAAR
LLGAGPWAVGVESKALLELDLRGVSLVTQYKLHELDSSTKPHLIAQQASG
GCGCVWRWWAWIIVVTDADGASEKVEQRKRLDRKLLALGSHTEKRVVAAL
LRE*
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mRNA from alignment at tig00000897_pilon:451754..452515-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5739.t1 ID=Ggra5739.t1|Name=Ggra5739.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000897_pilon:451754..452515- (Gracilaria gracilis GNS1m male)
ATGGGAGTTCCCGTCTCAATACTTTCTTTCATATCGGCGAGATGTGCGGG
GCTTGCGGATGGAGTTGACAAAATTGACATCGGCTCTCAACGCGTCGTAC
GTAGTGAGCACGACGTCGGCATTTTGCAAAACGCGCTGCGGGATATAGCC
GCTGTTACGAAGACCTTGGAAGACGATGATGTTGAGAGCGTGCTTGACGT
GCTTTTCAATCTCGTTCTTTCATTGCAAAAGCAGTGCAGATGTGATGACG
ATGAGGGTAGCCCGAGAGTTTGGGATTTGGTGCCTTTGAACATCGTGCTT
GCAAATAGAGTATATGTGGTGTATACAAGAAGGGCATATGAAACCGCCAG
GCGCCTGGTGGCCATGGGTGACACAAGCTCTGTGCGCGCTGCGTCCGCAA
TCGACGCATTGGGGGAGACGGGGTTTGTTGGAACTTGGAGCGCTGCACGG
CTCTTGGGAGCAGGACCATGGGCTGTCGGGGTTGAAAGCAAGGCGCTTCT
TGAACTTGATCTCAGAGGCGTTTCTCTTGTTACACAGTACAAGTTACATG
AGCTCGACAGTTCTACCAAGCCCCATCTCATCGCACAGCAGGCCTCCGGG
GGGTGTGGGTGTGTGTGGCGGTGGTGGGCGTGGATAATTGTGGTGACCGA
CGCAGATGGCGCCTCCGAAAAGGTCGAGCAGCGCAAACGGCTCGATAGAA
AGCTGCTGGCGCTGGGCAGCCATACAGAAAAACGGGTCGTGGCAGCGCTG
CTCCGCGAATGA
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Coding sequence (CDS) from alignment at tig00000897_pilon:451754..452515-

>Ggra5739.t1 ID=Ggra5739.t1|Name=Ggra5739.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00000897_pilon:451754..452515- (Gracilaria gracilis GNS1m male)
ATGGGAGTTCCCGTCTCAATACTTTCTTTCATATCGGCGAGATGTGCGGG
GCTTGCGGATGGAGTTGACAAAATTGACATCGGCTCTCAACGCGTCGTAC
GTAGTGAGCACGACGTCGGCATTTTGCAAAACGCGCTGCGGGATATAGCC
GCTGTTACGAAGACCTTGGAAGACGATGATGTTGAGAGCGTGCTTGACGT
GCTTTTCAATCTCGTTCTTTCATTGCAAAAGCAGTGCAGATGTGATGACG
ATGAGGGTAGCCCGAGAGTTTGGGATTTGGTGCCTTTGAACATCGTGCTT
GCAAATAGAGTATATGTGGTGTATACAAGAAGGGCATATGAAACCGCCAG
GCGCCTGGTGGCCATGGGTGACACAAGCTCTGTGCGCGCTGCGTCCGCAA
TCGACGCATTGGGGGAGACGGGGTTTGTTGGAACTTGGAGCGCTGCACGG
CTCTTGGGAGCAGGACCATGGGCTGTCGGGGTTGAAAGCAAGGCGCTTCT
TGAACTTGATCTCAGAGGCGTTTCTCTTGTTACACAGTACAAGTTACATG
AGCTCGACAGTTCTACCAAGCCCCATCTCATCGCACAGCAGGCCTCCGGG
GGGTGTGGGTGTGTGTGGCGGTGGTGGGCGTGGATAATTGTGGTGACCGA
CGCAGATGGCGCCTCCGAAAAGGTCGAGCAGCGCAAACGGCTCGATAGAA
AGCTGCTGGCGCTGGGCAGCCATACAGAAAAACGGGTCGTGGCAGCGCTG
CTCCGCGAATGA
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