Ggra5731.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5731.t1
Unique NameGgra5731.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:199871..200809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5731Ggra5731Gracilaria gracilis GNS1m malegenetig00000897_pilon 199871..200809 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5731.t1.start1Ggra5731.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 199871..199873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5731.t1.CDS1Ggra5731.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 199871..200809 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5731.t1.exon1Ggra5731.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 199871..200809 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5731.t1.stop1Ggra5731.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 200807..200809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5731.t1Ggra5731.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 199871..200809 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5731.t1 ID=Ggra5731.t1|Name=Ggra5731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MDVDDDECDRVLLELFGDAQPLPLLPLVDFDCVSSPRAVPPAAAEASSVV
GARAVLSDDSGLPQLPDELPLTPAARHGAYRGAPTAPGRDGYVLTDDAVL
AAPAVMTPPLPAPASAALIAGVDGARAEEHSCAATTETLCEPRRGGADGS
SGVAKHDASSKRTSRPATLRARPVVYKSRHLSSVAPSLVASTSSSLLSAA
TSIRVANRTAEAVRDAFKAAKEREICKARLASDASNADKYERRLKMNRWS
AAASRVRRDAYTKALEAELVRMERAFKELMSQLRGDEGRQGGALKEWVNY
VSEQRREDDGSS*
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spliced messenger RNA

>Ggra5731.t1 ID=Ggra5731.t1|Name=Ggra5731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000897_pilon:199871..200809+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGGACGACGACGAGTGCGACCGCGTGCTACTCGAGTTGTTCGG
CGATGCGCAGCCATTGCCGTTGCTGCCTCTCGTAGACTTTGACTGCGTGT
CTTCGCCGCGCGCCGTGCCGCCGGCCGCGGCAGAGGCGTCGTCTGTGGTG
GGGGCGCGCGCCGTGCTGAGTGATGATAGTGGCTTGCCGCAGCTGCCGGA
TGAACTGCCACTAACGCCCGCCGCGCGCCACGGCGCGTATCGCGGCGCGC
CCACTGCTCCTGGTCGTGATGGCTACGTGTTGACGGACGACGCTGTACTG
GCTGCGCCAGCGGTGATGACGCCGCCGCTACCGGCGCCGGCGAGCGCTGC
GCTGATAGCTGGGGTGGACGGCGCGCGTGCGGAAGAGCATTCTTGCGCGG
CGACGACTGAGACGTTATGCGAACCGCGCAGGGGCGGCGCCGACGGTAGC
AGCGGCGTGGCCAAGCACGACGCTTCGTCGAAAAGAACGTCACGGCCAGC
TACGCTACGCGCAAGGCCGGTGGTCTACAAGTCGCGGCACCTCTCAAGCG
TGGCGCCGTCGTTAGTAGCCTCCACGTCGTCGTCACTGTTATCGGCGGCG
ACTTCGATTCGCGTGGCGAACCGCACGGCGGAGGCCGTCAGAGACGCGTT
CAAGGCGGCGAAGGAGCGCGAGATATGCAAGGCGAGACTGGCGAGTGATG
CCAGTAATGCGGATAAGTATGAGCGGCGCCTCAAGATGAACCGGTGGAGT
GCGGCGGCAAGTCGCGTGAGAAGGGACGCTTATACGAAGGCGTTGGAGGC
GGAGCTTGTTAGGATGGAGCGCGCTTTTAAGGAGCTGATGAGTCAGCTGC
GGGGCGACGAGGGGCGCCAAGGTGGCGCGTTGAAGGAATGGGTTAATTAT
GTGAGTGAGCAGCGTCGGGAGGATGATGGCTCCTCATGA
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protein sequence of Ggra5731.t1

>Ggra5731.t1 ID=Ggra5731.t1|Name=Ggra5731.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MDVDDDECDRVLLELFGDAQPLPLLPLVDFDCVSSPRAVPPAAAEASSVV
GARAVLSDDSGLPQLPDELPLTPAARHGAYRGAPTAPGRDGYVLTDDAVL
AAPAVMTPPLPAPASAALIAGVDGARAEEHSCAATTETLCEPRRGGADGS
SGVAKHDASSKRTSRPATLRARPVVYKSRHLSSVAPSLVASTSSSLLSAA
TSIRVANRTAEAVRDAFKAAKEREICKARLASDASNADKYERRLKMNRWS
AAASRVRRDAYTKALEAELVRMERAFKELMSQLRGDEGRQGGALKEWVNY
VSEQRREDDGSS*
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mRNA from alignment at tig00000897_pilon:199871..200809+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5731.t1 ID=Ggra5731.t1|Name=Ggra5731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000897_pilon:199871..200809+ (Gracilaria gracilis GNS1m male)
ATGGACGTGGACGACGACGAGTGCGACCGCGTGCTACTCGAGTTGTTCGG
CGATGCGCAGCCATTGCCGTTGCTGCCTCTCGTAGACTTTGACTGCGTGT
CTTCGCCGCGCGCCGTGCCGCCGGCCGCGGCAGAGGCGTCGTCTGTGGTG
GGGGCGCGCGCCGTGCTGAGTGATGATAGTGGCTTGCCGCAGCTGCCGGA
TGAACTGCCACTAACGCCCGCCGCGCGCCACGGCGCGTATCGCGGCGCGC
CCACTGCTCCTGGTCGTGATGGCTACGTGTTGACGGACGACGCTGTACTG
GCTGCGCCAGCGGTGATGACGCCGCCGCTACCGGCGCCGGCGAGCGCTGC
GCTGATAGCTGGGGTGGACGGCGCGCGTGCGGAAGAGCATTCTTGCGCGG
CGACGACTGAGACGTTATGCGAACCGCGCAGGGGCGGCGCCGACGGTAGC
AGCGGCGTGGCCAAGCACGACGCTTCGTCGAAAAGAACGTCACGGCCAGC
TACGCTACGCGCAAGGCCGGTGGTCTACAAGTCGCGGCACCTCTCAAGCG
TGGCGCCGTCGTTAGTAGCCTCCACGTCGTCGTCACTGTTATCGGCGGCG
ACTTCGATTCGCGTGGCGAACCGCACGGCGGAGGCCGTCAGAGACGCGTT
CAAGGCGGCGAAGGAGCGCGAGATATGCAAGGCGAGACTGGCGAGTGATG
CCAGTAATGCGGATAAGTATGAGCGGCGCCTCAAGATGAACCGGTGGAGT
GCGGCGGCAAGTCGCGTGAGAAGGGACGCTTATACGAAGGCGTTGGAGGC
GGAGCTTGTTAGGATGGAGCGCGCTTTTAAGGAGCTGATGAGTCAGCTGC
GGGGCGACGAGGGGCGCCAAGGTGGCGCGTTGAAGGAATGGGTTAATTAT
GTGAGTGAGCAGCGTCGGGAGGATGATGGCTCCTCATGA
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Coding sequence (CDS) from alignment at tig00000897_pilon:199871..200809+

>Ggra5731.t1 ID=Ggra5731.t1|Name=Ggra5731.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000897_pilon:199871..200809+ (Gracilaria gracilis GNS1m male)
ATGGACGTGGACGACGACGAGTGCGACCGCGTGCTACTCGAGTTGTTCGG
CGATGCGCAGCCATTGCCGTTGCTGCCTCTCGTAGACTTTGACTGCGTGT
CTTCGCCGCGCGCCGTGCCGCCGGCCGCGGCAGAGGCGTCGTCTGTGGTG
GGGGCGCGCGCCGTGCTGAGTGATGATAGTGGCTTGCCGCAGCTGCCGGA
TGAACTGCCACTAACGCCCGCCGCGCGCCACGGCGCGTATCGCGGCGCGC
CCACTGCTCCTGGTCGTGATGGCTACGTGTTGACGGACGACGCTGTACTG
GCTGCGCCAGCGGTGATGACGCCGCCGCTACCGGCGCCGGCGAGCGCTGC
GCTGATAGCTGGGGTGGACGGCGCGCGTGCGGAAGAGCATTCTTGCGCGG
CGACGACTGAGACGTTATGCGAACCGCGCAGGGGCGGCGCCGACGGTAGC
AGCGGCGTGGCCAAGCACGACGCTTCGTCGAAAAGAACGTCACGGCCAGC
TACGCTACGCGCAAGGCCGGTGGTCTACAAGTCGCGGCACCTCTCAAGCG
TGGCGCCGTCGTTAGTAGCCTCCACGTCGTCGTCACTGTTATCGGCGGCG
ACTTCGATTCGCGTGGCGAACCGCACGGCGGAGGCCGTCAGAGACGCGTT
CAAGGCGGCGAAGGAGCGCGAGATATGCAAGGCGAGACTGGCGAGTGATG
CCAGTAATGCGGATAAGTATGAGCGGCGCCTCAAGATGAACCGGTGGAGT
GCGGCGGCAAGTCGCGTGAGAAGGGACGCTTATACGAAGGCGTTGGAGGC
GGAGCTTGTTAGGATGGAGCGCGCTTTTAAGGAGCTGATGAGTCAGCTGC
GGGGCGACGAGGGGCGCCAAGGTGGCGCGTTGAAGGAATGGGTTAATTAT
GTGAGTGAGCAGCGTCGGGAGGATGATGGCTCCTCATGA
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