Ggra5730.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5730.t1
Unique NameGgra5730.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:147724..148384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706379.1
Preferred nameGPM2
PFAMsPGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
Max annot lvl2759|Eukaryota
KEGG rclassRC00408
KEGG koko:K01835,ko:K15779
KEGG ReactionR00959,R01057,R02749,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
GOsGO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006139,GO:0006148,GO:0006152,GO:0006166,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008617,GO:0008973,GO:0009056,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019318,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042451,GO:0042454,GO:0042455,GO:0043094,GO:0043101,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046102,GO:0046115,GO:0046128,GO:0046129,GO:0046130,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659
Evalue1.63e-15
EggNOG OGsCOG1109@1|root,KOG1220@2759|Eukaryota
EC5.4.2.2,5.4.2.7
Descriptionalginic acid metabolic process
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5730Ggra5730Gracilaria gracilis GNS1m malegenetig00000897_pilon 147724..148384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5730.t1Ggra5730.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 147724..148384 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5730.t1.stop1Ggra5730.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 147724..147726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5730.t1.CDS1Ggra5730.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 147724..147869 -
Ggra5730.t1.CDS2Ggra5730.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000897_pilon 148039..148384 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5730.t1.exon1Ggra5730.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 147724..147869 -
Ggra5730.t1.exon2Ggra5730.t1.exon2Gracilaria gracilis GNS1m maleexontig00000897_pilon 148039..148384 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5730.t1.intron1Ggra5730.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000897_pilon 147870..148038 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5730.t1.start1Ggra5730.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 148382..148384 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5730.t1 ID=Ggra5730.t1|Name=Ggra5730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=164bp
MLYNTNFTLEERLGELLTECGSHISRNSYCRLTDASPTTQEVFDSPWRRG
LPIAFANAVVKSVRGLTYGTDTAEENGVARLPGDTSTQFITFRGPVPESE
GSDYPLIIHLRGSGPEPKIKFYSELRTTAQQCENGSAQRFWKNAVEDAVS
KVLRPSENKLKHG*
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spliced messenger RNA

>Ggra5730.t1 ID=Ggra5730.t1|Name=Ggra5730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00000897_pilon:147724..148384- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTATACAACACCAATTTCACTTTAGAAGAACGTCTTGGGGAATTGCT
CACTGAGTGTGGTAGTCACATTTCAAGAAATAGTTATTGTAGGTTAACTG
ATGCTTCCCCCACCACACAAGAAGTTTTCGATTCGCCTTGGAGGAGAGGA
TTACCCATAGCATTTGCAAATGCAGTGGTGAAGTCTGTCCGCGGTCTCAC
ATATGGTACCGACACTGCCGAAGAGAACGGTGTGGCTCGACTCCCTGGCG
ATACCTCTACACAGTTCATAACCTTTAGAGGCCCAGTACCTGAAAGCGAA
GGCAGCGATTATCCTCTGATAATCCATTTGCGAGGAAGCGGACCCGAGCC
GAAAATAAAGTTCTACTCCGAGCTACGAACCACAGCGCAACAGTGTGAGA
ATGGCTCTGCGCAGAGGTTTTGGAAAAACGCTGTAGAGGATGCCGTCTCT
AAGGTGCTAAGACCGTCCGAGAATAAGCTCAAGCACGGATAA
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protein sequence of Ggra5730.t1

>Ggra5730.t1 ID=Ggra5730.t1|Name=Ggra5730.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=164bp
MLYNTNFTLEERLGELLTECGSHISRNSYCRLTDASPTTQEVFDSPWRRG
LPIAFANAVVKSVRGLTYGTDTAEENGVARLPGDTSTQFITFRGPVPESE
GSDYPLIIHLRGSGPEPKIKFYSELRTTAQQCENGSAQRFWKNAVEDAVS
KVLRPSENKLKHG*
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mRNA from alignment at tig00000897_pilon:147724..148384-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5730.t1 ID=Ggra5730.t1|Name=Ggra5730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=661bp|location=Sequence derived from alignment at tig00000897_pilon:147724..148384- (Gracilaria gracilis GNS1m male)
ATGCTATACAACACCAATTTCACTTTAGAAGAACGTCTTGGGGAATTGCT
CACTGAGTGTGGTAGTCACATTTCAAGAAATAGTTATTGTAGGTTAACTG
ATGCTTCCCCCACCACACAAGAAGTTTTCGATTCGCCTTGGAGGAGAGGA
TTACCCATAGCATTTGCAAATGCAGTGGTGAAGTCTGTCCGCGGTCTCAC
ATATGGTACCGACACTGCCGAAGAGAACGGTGTGGCTCGACTCCCTGGCG
ATACCTCTACACAGTTCATAACCTTTAGAGGCCCAGTACCTGAAAGCGAA
GGCAGCGATTATCCTCTGATAATCCATTTGCGAGGAAGCGGACCCGGTAA
GTTGCAGAACTTCCTTCTTCGTAGCGTGGCTCTTTAGATCCATCGAGTTC
GACCCTAAGCAAGTACCAGAAACGTTTCCGCGTTGACCGCAATGTATCGT
TCCCCAGTCGGGCTAACCCAACACTCTTTATACATCTGCAAAATGGTTAC
CCCAATTGAATACAGAGCCGAAAATAAAGTTCTACTCCGAGCTACGAACC
ACAGCGCAACAGTGTGAGAATGGCTCTGCGCAGAGGTTTTGGAAAAACGC
TGTAGAGGATGCCGTCTCTAAGGTGCTAAGACCGTCCGAGAATAAGCTCA
AGCACGGATAA
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Coding sequence (CDS) from alignment at tig00000897_pilon:147724..148384-

>Ggra5730.t1 ID=Ggra5730.t1|Name=Ggra5730.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=492bp|location=Sequence derived from alignment at tig00000897_pilon:147724..148384- (Gracilaria gracilis GNS1m male)
ATGCTATACAACACCAATTTCACTTTAGAAGAACGTCTTGGGGAATTGCT
CACTGAGTGTGGTAGTCACATTTCAAGAAATAGTTATTGTAGGTTAACTG
ATGCTTCCCCCACCACACAAGAAGTTTTCGATTCGCCTTGGAGGAGAGGA
TTACCCATAGCATTTGCAAATGCAGTGGTGAAGTCTGTCCGCGGTCTCAC
ATATGGTACCGACACTGCCGAAGAGAACGGTGTGGCTCGACTCCCTGGCG
ATACCTCTACACAGTTCATAACCTTTAGAGGCCCAGTACCTGAAAGCGAA
GGCAGCGATTATCCTCTGATAATCCATTTGCGAGGAAGCGGACCCGAGCC
GAAAATAAAGTTCTACTCCGAGCTACGAACCACAGCGCAACAGTGTGAGA
ATGGCTCTGCGCAGAGGTTTTGGAAAAACGCTGTAGAGGATGCCGTCTCT
AAGGTGCTAAGACCGTCCGAGAATAAGCTCAAGCACGGATAA
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