Ggra5707.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5707.t1
Unique NameGgra5707.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1410504..1411457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_34229
Max annot lvl2759|Eukaryota
Evalue3.79e-45
EggNOG OGs28KAS@1|root,2QSRK@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5707Ggra5707Gracilaria gracilis GNS1m malegenetig00000842_pilon 1410504..1411457 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5707.t1.stop1Ggra5707.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1410504..1410506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5707.t1.CDS1Ggra5707.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1410504..1411457 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5707.t1.exon1Ggra5707.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1410504..1411457 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5707.t1.start1Ggra5707.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1411455..1411457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5707.t1Ggra5707.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1410504..1411457 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5707.t1 ID=Ggra5707.t1|Name=Ggra5707.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp
MVRRAHRRAAFVQPIRLNLSRVGTGIPSNSSRTAVTHRRTSRMSASEHDL
LVVGAGHLGSRIAQQWRRLHPSATITGETKTETSHDALRHIGVTPVLAGA
SSATFPNVVFCVPPRGDPAYSDVVARAAKRASRRFLFTSSTSVHGGVEFI
NEDTPTSDKGRAAFLHHAENAALQYSASFVVRLAGLYLIDRGPHTFWLSK
QVVSGSEKSLINLVHYDDAAAAMVCALRLSQVPERRKFLIAAPEAVTRRQ
IVECALKHPRFKGVAVPEFLNDEPFVEKRVDGSWSSRVLGWRPLYSSFAQ
FMELDAQRVAAPNSVNT*
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spliced messenger RNA

>Ggra5707.t1 ID=Ggra5707.t1|Name=Ggra5707.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000842_pilon:1410504..1411457- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGCCGCGCCCATCGCCGCGCTGCCTTCGTGCAACCGATTCGCCT
CAACCTCAGTCGCGTCGGAACCGGCATTCCGTCCAACTCGAGTCGCACCG
CCGTCACCCACCGCCGCACATCGCGCATGTCGGCGTCCGAACACGACCTG
CTCGTCGTCGGCGCCGGCCACCTGGGGTCGCGCATCGCGCAGCAGTGGCG
GCGCTTACATCCGTCCGCCACCATAACCGGCGAGACCAAGACGGAAACGT
CACACGACGCGCTGCGCCACATCGGGGTGACGCCTGTGTTGGCGGGCGCT
TCTTCGGCCACATTTCCTAACGTCGTGTTTTGCGTGCCTCCCAGGGGAGA
TCCTGCTTATAGCGACGTTGTGGCACGGGCGGCGAAGAGAGCTTCTCGAC
GATTCTTGTTCACTTCGTCCACTTCTGTGCATGGTGGTGTCGAGTTTATC
AACGAGGATACTCCCACTTCGGACAAGGGCAGGGCCGCCTTTTTGCATCA
CGCGGAGAACGCTGCTTTGCAGTACAGTGCTTCTTTTGTGGTGCGGCTTG
CGGGGCTGTACTTGATTGATAGGGGTCCACATACCTTTTGGCTTTCAAAG
CAAGTTGTGTCCGGCAGTGAGAAATCGCTCATCAATCTTGTGCACTATGA
CGATGCTGCTGCCGCAATGGTGTGTGCGCTGCGCTTGTCACAAGTTCCGG
AGAGACGCAAGTTTTTGATTGCGGCACCGGAAGCCGTTACTCGACGCCAA
ATTGTCGAATGTGCTCTGAAACATCCTCGCTTTAAAGGCGTTGCTGTGCC
TGAGTTTTTGAACGATGAGCCGTTTGTGGAGAAGCGTGTTGATGGCAGTT
GGTCTAGTCGCGTGCTTGGTTGGCGACCGCTTTATTCTAGCTTTGCGCAG
TTTATGGAGCTTGATGCACAGCGAGTTGCGGCGCCCAATTCCGTTAATAC
TTGA
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protein sequence of Ggra5707.t1

>Ggra5707.t1 ID=Ggra5707.t1|Name=Ggra5707.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=318bp
MVRRAHRRAAFVQPIRLNLSRVGTGIPSNSSRTAVTHRRTSRMSASEHDL
LVVGAGHLGSRIAQQWRRLHPSATITGETKTETSHDALRHIGVTPVLAGA
SSATFPNVVFCVPPRGDPAYSDVVARAAKRASRRFLFTSSTSVHGGVEFI
NEDTPTSDKGRAAFLHHAENAALQYSASFVVRLAGLYLIDRGPHTFWLSK
QVVSGSEKSLINLVHYDDAAAAMVCALRLSQVPERRKFLIAAPEAVTRRQ
IVECALKHPRFKGVAVPEFLNDEPFVEKRVDGSWSSRVLGWRPLYSSFAQ
FMELDAQRVAAPNSVNT*
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mRNA from alignment at tig00000842_pilon:1410504..1411457-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5707.t1 ID=Ggra5707.t1|Name=Ggra5707.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000842_pilon:1410504..1411457- (Gracilaria gracilis GNS1m male)
ATGGTGCGCCGCGCCCATCGCCGCGCTGCCTTCGTGCAACCGATTCGCCT
CAACCTCAGTCGCGTCGGAACCGGCATTCCGTCCAACTCGAGTCGCACCG
CCGTCACCCACCGCCGCACATCGCGCATGTCGGCGTCCGAACACGACCTG
CTCGTCGTCGGCGCCGGCCACCTGGGGTCGCGCATCGCGCAGCAGTGGCG
GCGCTTACATCCGTCCGCCACCATAACCGGCGAGACCAAGACGGAAACGT
CACACGACGCGCTGCGCCACATCGGGGTGACGCCTGTGTTGGCGGGCGCT
TCTTCGGCCACATTTCCTAACGTCGTGTTTTGCGTGCCTCCCAGGGGAGA
TCCTGCTTATAGCGACGTTGTGGCACGGGCGGCGAAGAGAGCTTCTCGAC
GATTCTTGTTCACTTCGTCCACTTCTGTGCATGGTGGTGTCGAGTTTATC
AACGAGGATACTCCCACTTCGGACAAGGGCAGGGCCGCCTTTTTGCATCA
CGCGGAGAACGCTGCTTTGCAGTACAGTGCTTCTTTTGTGGTGCGGCTTG
CGGGGCTGTACTTGATTGATAGGGGTCCACATACCTTTTGGCTTTCAAAG
CAAGTTGTGTCCGGCAGTGAGAAATCGCTCATCAATCTTGTGCACTATGA
CGATGCTGCTGCCGCAATGGTGTGTGCGCTGCGCTTGTCACAAGTTCCGG
AGAGACGCAAGTTTTTGATTGCGGCACCGGAAGCCGTTACTCGACGCCAA
ATTGTCGAATGTGCTCTGAAACATCCTCGCTTTAAAGGCGTTGCTGTGCC
TGAGTTTTTGAACGATGAGCCGTTTGTGGAGAAGCGTGTTGATGGCAGTT
GGTCTAGTCGCGTGCTTGGTTGGCGACCGCTTTATTCTAGCTTTGCGCAG
TTTATGGAGCTTGATGCACAGCGAGTTGCGGCGCCCAATTCCGTTAATAC
TTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1410504..1411457-

>Ggra5707.t1 ID=Ggra5707.t1|Name=Ggra5707.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00000842_pilon:1410504..1411457- (Gracilaria gracilis GNS1m male)
ATGGTGCGCCGCGCCCATCGCCGCGCTGCCTTCGTGCAACCGATTCGCCT
CAACCTCAGTCGCGTCGGAACCGGCATTCCGTCCAACTCGAGTCGCACCG
CCGTCACCCACCGCCGCACATCGCGCATGTCGGCGTCCGAACACGACCTG
CTCGTCGTCGGCGCCGGCCACCTGGGGTCGCGCATCGCGCAGCAGTGGCG
GCGCTTACATCCGTCCGCCACCATAACCGGCGAGACCAAGACGGAAACGT
CACACGACGCGCTGCGCCACATCGGGGTGACGCCTGTGTTGGCGGGCGCT
TCTTCGGCCACATTTCCTAACGTCGTGTTTTGCGTGCCTCCCAGGGGAGA
TCCTGCTTATAGCGACGTTGTGGCACGGGCGGCGAAGAGAGCTTCTCGAC
GATTCTTGTTCACTTCGTCCACTTCTGTGCATGGTGGTGTCGAGTTTATC
AACGAGGATACTCCCACTTCGGACAAGGGCAGGGCCGCCTTTTTGCATCA
CGCGGAGAACGCTGCTTTGCAGTACAGTGCTTCTTTTGTGGTGCGGCTTG
CGGGGCTGTACTTGATTGATAGGGGTCCACATACCTTTTGGCTTTCAAAG
CAAGTTGTGTCCGGCAGTGAGAAATCGCTCATCAATCTTGTGCACTATGA
CGATGCTGCTGCCGCAATGGTGTGTGCGCTGCGCTTGTCACAAGTTCCGG
AGAGACGCAAGTTTTTGATTGCGGCACCGGAAGCCGTTACTCGACGCCAA
ATTGTCGAATGTGCTCTGAAACATCCTCGCTTTAAAGGCGTTGCTGTGCC
TGAGTTTTTGAACGATGAGCCGTTTGTGGAGAAGCGTGTTGATGGCAGTT
GGTCTAGTCGCGTGCTTGGTTGGCGACCGCTTTATTCTAGCTTTGCGCAG
TTTATGGAGCTTGATGCACAGCGAGTTGCGGCGCCCAATTCCGTTAATAC
TTGA
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