Ggra5670.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5670.t1
Unique NameGgra5670.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length73
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1308230..1308604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5670Ggra5670Gracilaria gracilis GNS1m malegenetig00000842_pilon 1308230..1308604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5670.t1Ggra5670.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1308230..1308604 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5670.t1.stop1Ggra5670.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1308230..1308232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5670.t1.CDS1Ggra5670.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1308230..1308256 -
Ggra5670.t1.CDS2Ggra5670.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1308324..1308442 -
Ggra5670.t1.CDS3Ggra5670.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1308532..1308604 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5670.t1.exon1Ggra5670.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1308230..1308256 -
Ggra5670.t1.exon2Ggra5670.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1308324..1308442 -
Ggra5670.t1.exon3Ggra5670.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 1308532..1308604 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5670.t1.intron1Ggra5670.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1308257..1308323 -
Ggra5670.t1.intron2Ggra5670.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1308443..1308531 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5670.t1.start1Ggra5670.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1308602..1308604 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5670.t1 ID=Ggra5670.t1|Name=Ggra5670.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=73bp
MVDNACEHMSPNWIHIDKIVVSGIISMAAWANALFEPQVQPFLIIIESSN
SEDGTRIDACDAVIDYLCGLVP*
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spliced messenger RNA

>Ggra5670.t1 ID=Ggra5670.t1|Name=Ggra5670.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp|location=Sequence derived from alignment at tig00000842_pilon:1308230..1308604- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGACAATGCTTGTGAACACATGAGTCCAAACTGGATTCACATCGA
CAAAATTGTTGTGTCTGGTATAATATCGATGGCGGCGTGGGCAAATGCAT
TGTTCGAGCCCCAGGTGCAGCCCTTTCTAATAATCATAGAGTCTTCAAAT
TCAGAGGACGGCACGCGGATTGATGCTTGCGATGCAGTTATCGACTATTT
GTGTGGTCTTGTGCCTTGA
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protein sequence of Ggra5670.t1

>Ggra5670.t1 ID=Ggra5670.t1|Name=Ggra5670.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=73bp
MVDNACEHMSPNWIHIDKIVVSGIISMAAWANALFEPQVQPFLIIIESSN
SEDGTRIDACDAVIDYLCGLVP*
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mRNA from alignment at tig00000842_pilon:1308230..1308604-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5670.t1 ID=Ggra5670.t1|Name=Ggra5670.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000842_pilon:1308230..1308604- (Gracilaria gracilis GNS1m male)
ATGGTTGACAATGCTTGTGAACACATGAGTCCAAACTGGATTCACATCGA
CAAAATTGTTGTGTCTGGTATAAGTGCGTCAATGCTAATTCACTGCTAAG
AGTAATCCTTATTGTACCCTTGCAGTACTAACCTGTTAAAGAACGACCCC
CCGTTGATGAAGTATCGATGGCGGCGTGGGCAAATGCATTGTTCGAGCCC
CAGGTGCAGCCCTTTCTAATAATCATAGAGTCTTCAAATTCAGAGGACGG
CACGCGGATTGATGCTTGCGATGCAGTTATCGTCAGCGCTGTTTTCGATT
ATCGTATCCTCGAGCCAAAACACCACGAAGTTAGTCCGTGTATTTCAGGA
CTATTTGTGTGGTCTTGTGCCTTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1308230..1308604-

>Ggra5670.t1 ID=Ggra5670.t1|Name=Ggra5670.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=219bp|location=Sequence derived from alignment at tig00000842_pilon:1308230..1308604- (Gracilaria gracilis GNS1m male)
ATGGTTGACAATGCTTGTGAACACATGAGTCCAAACTGGATTCACATCGA
CAAAATTGTTGTGTCTGGTATAATATCGATGGCGGCGTGGGCAAATGCAT
TGTTCGAGCCCCAGGTGCAGCCCTTTCTAATAATCATAGAGTCTTCAAAT
TCAGAGGACGGCACGCGGATTGATGCTTGCGATGCAGTTATCGACTATTT
GTGTGGTCTTGTGCCTTGA
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