Ggra5668.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5668.t1
Unique NameGgra5668.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1300941..1302114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX41594
Preferred nameCPX2
PFAMsCoprogen_oxidas
Max annot lvl2759|Eukaryota
KEGG rclassRC00884
KEGG koko:K00228
KEGG ReactionR03220
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
GOsGO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983
Evalue1.78e-83
EggNOG OGsCOG0408@1|root,KOG1518@2759|Eukaryota
EC1.3.3.3
Descriptioncoproporphyrinogen oxidase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5668Ggra5668Gracilaria gracilis GNS1m malegenetig00000842_pilon 1300941..1302114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5668.t1Ggra5668.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1300941..1302114 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5668.t1.stop1Ggra5668.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1300941..1300943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5668.t1.CDS1Ggra5668.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1300941..1301405 -
Ggra5668.t1.CDS2Ggra5668.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1301472..1301812 -
Ggra5668.t1.CDS3Ggra5668.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1301874..1302114 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5668.t1.exon1Ggra5668.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1300941..1301405 -
Ggra5668.t1.exon2Ggra5668.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1301472..1301812 -
Ggra5668.t1.exon3Ggra5668.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 1301874..1302114 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5668.t1.intron1Ggra5668.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1301406..1301471 -
Ggra5668.t1.intron2Ggra5668.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1301813..1301873 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5668.t1.start1Ggra5668.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1302112..1302114 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5668.t1 ID=Ggra5668.t1|Name=Ggra5668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=349bp
MLCFGFSIDPRFSFANIKARRNAKTCLVKASIPESSEFNAFVSLVRDSQE
RLCKRLESVDGVSKFSSDEWKNEKGSGLTKVLQHGGLFEKAGVNVSVVKG
TLSAVRAEALRNRGKVIAPGERYSAAALSFVLHAQSPHVPTLRGDVRMFA
TNHGLSVGGGVDLTVFYVNRQQIRNFHQHWKAVCDVYDTRLYYKLKKQCD
SYFYIPSRAEYRGAGGLFYDDLELPMSEHISFTTSMLNNFLPSYLPILQG
NAALPFTEAQKRWQRIRRGRYLEFNLLNDRGVRFGLSGAHHSRTESIMIS
APPSVEWPYQYKVELHSPEWETLEFLRGEPIDWISIGEKEVDFQNEAI*
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spliced messenger RNA

>Ggra5668.t1 ID=Ggra5668.t1|Name=Ggra5668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000842_pilon:1300941..1302114- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTGTTTTGGATTCTCCATCGACCCACGTTTTTCATTTGCTAACAT
CAAAGCAAGGCGAAATGCTAAAACTTGTCTCGTAAAGGCATCGATACCAG
AGTCTTCAGAGTTCAACGCTTTCGTCAGTTTAGTCCGGGATTCTCAAGAA
CGGCTTTGTAAAAGGCTTGAATCTGTGGATGGTGTTTCAAAGTTCAGTTC
TGACGAATGGAAGAACGAGAAGGGTTCCGGACTCACAAAGGTTTTACAAC
ATGGTGGCCTTTTTGAAAAGGCTGGAGTGAATGTATCTGTTGTAAAAGGA
ACACTTTCGGCCGTACGAGCAGAAGCCCTCCGCAATCGGGGAAAAGTCAT
TGCGCCAGGTGAGCGATATAGCGCAGCTGCGCTCAGCTTTGTTTTACACG
CACAATCCCCGCATGTACCGACATTAAGAGGCGATGTTCGAATGTTTGCA
ACTAATCACGGCCTTTCTGTTGGAGGAGGAGTTGACCTCACAGTGTTCTA
CGTTAATCGCCAGCAAATAAGGAACTTTCATCAGCATTGGAAAGCAGTTT
GTGATGTTTATGATACCAGGTTGTACTACAAGCTCAAGAAGCAATGTGAT
TCATATTTCTATATCCCTTCACGTGCGGAATATCGAGGTGCGGGCGGTTT
GTTCTATGATGACCTAGAACTTCCCATGTCTGAACATATATCGTTCACTA
CCAGCATGTTGAACAACTTTCTCCCAAGCTATTTACCAATACTTCAAGGC
AATGCCGCGCTTCCGTTTACGGAAGCCCAGAAGAGATGGCAAAGAATTCG
AAGAGGACGATACCTGGAATTCAATCTGCTTAATGATCGAGGAGTTCGTT
TTGGTCTCTCGGGGGCACATCACTCGAGAACGGAGTCAATTATGATTTCC
GCACCGCCGTCCGTGGAATGGCCTTATCAATACAAAGTTGAACTTCACTC
ACCAGAGTGGGAAACTTTAGAGTTTCTCCGCGGGGAACCAATTGACTGGA
TCAGTATTGGGGAGAAGGAAGTGGATTTTCAGAACGAAGCAATTTGA
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protein sequence of Ggra5668.t1

>Ggra5668.t1 ID=Ggra5668.t1|Name=Ggra5668.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=349bp
MLCFGFSIDPRFSFANIKARRNAKTCLVKASIPESSEFNAFVSLVRDSQE
RLCKRLESVDGVSKFSSDEWKNEKGSGLTKVLQHGGLFEKAGVNVSVVKG
TLSAVRAEALRNRGKVIAPGERYSAAALSFVLHAQSPHVPTLRGDVRMFA
TNHGLSVGGGVDLTVFYVNRQQIRNFHQHWKAVCDVYDTRLYYKLKKQCD
SYFYIPSRAEYRGAGGLFYDDLELPMSEHISFTTSMLNNFLPSYLPILQG
NAALPFTEAQKRWQRIRRGRYLEFNLLNDRGVRFGLSGAHHSRTESIMIS
APPSVEWPYQYKVELHSPEWETLEFLRGEPIDWISIGEKEVDFQNEAI*
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mRNA from alignment at tig00000842_pilon:1300941..1302114-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5668.t1 ID=Ggra5668.t1|Name=Ggra5668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1174bp|location=Sequence derived from alignment at tig00000842_pilon:1300941..1302114- (Gracilaria gracilis GNS1m male)
ATGCTTTGTTTTGGATTCTCCATCGACCCACGTTTTTCATTTGCTAACAT
CAAAGCAAGGCGAAATGCTAAAACTTGTCTCGTAAAGGCATCGATACCAG
AGTCTTCAGAGTTCAACGCTTTCGTCAGTTTAGTCCGGGATTCTCAAGAA
CGGCTTTGTAAAAGGCTTGAATCTGTGGATGGTGTTTCAAAGTTCAGTTC
TGACGAATGGAAGAACGAGAAGGGTTCCGGACTCACAAAGGGTATGTCTC
CTTTGAGTGTAATCGTATTGAATAGCTGAGCTAAACGACTAACACAACTC
AGTTTTACAACATGGTGGCCTTTTTGAAAAGGCTGGAGTGAATGTATCTG
TTGTAAAAGGAACACTTTCGGCCGTACGAGCAGAAGCCCTCCGCAATCGG
GGAAAAGTCATTGCGCCAGGTGAGCGATATAGCGCAGCTGCGCTCAGCTT
TGTTTTACACGCACAATCCCCGCATGTACCGACATTAAGAGGCGATGTTC
GAATGTTTGCAACTAATCACGGCCTTTCTGTTGGAGGAGGAGTTGACCTC
ACAGTGTTCTACGTTAATCGCCAGCAAATAAGGAACTTTCATCAGCATTG
GAAAGCAGTTTGTGATGTTTATGATACCAGGTTGTACTACAAGGTAAGCA
TCTTAGAGTCTCTAGTATATCTGATTGCCTCTAACGATATTGCTGGTGTT
TGCTTATAGCTCAAGAAGCAATGTGATTCATATTTCTATATCCCTTCACG
TGCGGAATATCGAGGTGCGGGCGGTTTGTTCTATGATGACCTAGAACTTC
CCATGTCTGAACATATATCGTTCACTACCAGCATGTTGAACAACTTTCTC
CCAAGCTATTTACCAATACTTCAAGGCAATGCCGCGCTTCCGTTTACGGA
AGCCCAGAAGAGATGGCAAAGAATTCGAAGAGGACGATACCTGGAATTCA
ATCTGCTTAATGATCGAGGAGTTCGTTTTGGTCTCTCGGGGGCACATCAC
TCGAGAACGGAGTCAATTATGATTTCCGCACCGCCGTCCGTGGAATGGCC
TTATCAATACAAAGTTGAACTTCACTCACCAGAGTGGGAAACTTTAGAGT
TTCTCCGCGGGGAACCAATTGACTGGATCAGTATTGGGGAGAAGGAAGTG
GATTTTCAGAACGAAGCAATTTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1300941..1302114-

>Ggra5668.t1 ID=Ggra5668.t1|Name=Ggra5668.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00000842_pilon:1300941..1302114- (Gracilaria gracilis GNS1m male)
ATGCTTTGTTTTGGATTCTCCATCGACCCACGTTTTTCATTTGCTAACAT
CAAAGCAAGGCGAAATGCTAAAACTTGTCTCGTAAAGGCATCGATACCAG
AGTCTTCAGAGTTCAACGCTTTCGTCAGTTTAGTCCGGGATTCTCAAGAA
CGGCTTTGTAAAAGGCTTGAATCTGTGGATGGTGTTTCAAAGTTCAGTTC
TGACGAATGGAAGAACGAGAAGGGTTCCGGACTCACAAAGGTTTTACAAC
ATGGTGGCCTTTTTGAAAAGGCTGGAGTGAATGTATCTGTTGTAAAAGGA
ACACTTTCGGCCGTACGAGCAGAAGCCCTCCGCAATCGGGGAAAAGTCAT
TGCGCCAGGTGAGCGATATAGCGCAGCTGCGCTCAGCTTTGTTTTACACG
CACAATCCCCGCATGTACCGACATTAAGAGGCGATGTTCGAATGTTTGCA
ACTAATCACGGCCTTTCTGTTGGAGGAGGAGTTGACCTCACAGTGTTCTA
CGTTAATCGCCAGCAAATAAGGAACTTTCATCAGCATTGGAAAGCAGTTT
GTGATGTTTATGATACCAGGTTGTACTACAAGCTCAAGAAGCAATGTGAT
TCATATTTCTATATCCCTTCACGTGCGGAATATCGAGGTGCGGGCGGTTT
GTTCTATGATGACCTAGAACTTCCCATGTCTGAACATATATCGTTCACTA
CCAGCATGTTGAACAACTTTCTCCCAAGCTATTTACCAATACTTCAAGGC
AATGCCGCGCTTCCGTTTACGGAAGCCCAGAAGAGATGGCAAAGAATTCG
AAGAGGACGATACCTGGAATTCAATCTGCTTAATGATCGAGGAGTTCGTT
TTGGTCTCTCGGGGGCACATCACTCGAGAACGGAGTCAATTATGATTTCC
GCACCGCCGTCCGTGGAATGGCCTTATCAATACAAAGTTGAACTTCACTC
ACCAGAGTGGGAAACTTTAGAGTTTCTCCGCGGGGAACCAATTGACTGGA
TCAGTATTGGGGAGAAGGAAGTGGATTTTCAGAACGAAGCAATTTGA
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