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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 118163.Ple7327_0117 |
| Preferred name | uvrB |
| PFAMs | Helicase_C,ResIII,UVR,UvrB |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG ko | ko:K03702 |
| KEGG Pathway | ko03420,map03420 |
| Evalue | 2.18e-187 |
| EggNOG OGs | COG0556@1|root,COG0556@2|Bacteria,1G05H@1117|Cyanobacteria,3VI2V@52604|Pleurocapsales |
| Description | damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage |
| COG category | L |
| BRITE | ko00000,ko00001,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra5666.t1.start1 | Ggra5666.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000842_pilon 1296326..1296328 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra5666.t1.stop1 | Ggra5666.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000842_pilon 1298876..1298878 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra5666.t1 ID=Ggra5666.t1|Name=Ggra5666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=851bp MAPLFLSPPTLPSQRRPAHRNVVRCNHPARAPPSLPAPFREVSRSPPGLT VLYTRANAPITSSNLPQLLAYVRERPRVLLAVAPHATLPHGPSEALASLG VRLVRRSVLSGPSRRVRTPFVPQPLYSKRPSVPKHRFELHAPYALAGSQP RAVRFLTDALLKRGKLFQTLAGVTGSGKSYMMASVISAAQVPTLVLAPNK TLAAQLYNQFKLFFPRNRVEFFVSNFKHYQPEAYLPASDKYIAKSSSIDQ ELDRLRHAATKSLFERNDTIVVASVSSIYGLGLPSEYLQAAFPARKGEFM TPLVLVDSLRNLGYIEDSAKIETTRGLFRHIHQVVDVSPPWEQPGILYRF MFDDCRLATLQRVNVGADSIDDLDEQLVLYPAKHFVTPKHRIEEAIDKIQ EETRSSVHNFVAQGKKLEATRLQERVDTDMQMLRKVGFCHGIENYSLHLS GRDHRQPPETLLDYMPKDDKWLLFIDESHITVPQLGGMYAGNAARKKKLV QYGFRLPSAMENRPLNSREFWAKTHQTIFVSATPGTFERERSRSDGVIEA VIRPTGVLDPTVEVVGTNGQIEHLTSQLAKVASVGGKAIVTTVTKRFAED LADCLSSKAPVTGILNRPLNVAYLHSGIDSVGRMHVLEAMRESCDKEVAQ THHADTRENRNQLDVVVGVNLLREGIDLPAVQLVAILDADSEGFLRGETA LIQMIGRAARNIKGHVVMYADVVTVAMRRAIDETARRRKLQIAYNSLYRV EPSPVGGSDTFGNETSEPLLERIRSMKLRGKGTQQEYQFDQPPNLSESVM QSHRSAEEQSISESDVESISKKMLKAAETEDFETAALLRDRLVSMGVLKK * back to topspliced messenger RNA >Ggra5666.t1 ID=Ggra5666.t1|Name=Ggra5666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2553bp|location=Sequence derived from alignment at tig00000842_pilon:1296326..1298878+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGCCTCTGTTCCTCTCCCCGCCCACGCTTCCTTCCCAACGCCGCCC CGCTCATCGCAATGTTGTGCGATGCAATCATCCCGCGCGTGCGCCTCCCT CCCTGCCCGCCCCGTTCCGTGAGGTCTCTCGTTCACCGCCTGGCCTGACC GTCCTGTACACACGCGCCAATGCCCCCATCACATCTTCGAACCTGCCACA ACTGCTCGCGTATGTACGCGAGCGACCTCGGGTACTCCTCGCTGTCGCTC CACATGCCACTCTCCCACACGGCCCATCGGAAGCGCTTGCCAGTCTGGGC GTTCGTCTCGTTCGGCGTTCGGTTTTATCAGGCCCGTCTCGTCGAGTTCG CACACCGTTTGTTCCGCAACCACTGTATAGTAAGCGCCCTTCAGTTCCGA AGCATCGTTTTGAGCTGCATGCGCCCTACGCGCTTGCTGGTAGTCAGCCT CGTGCTGTACGTTTCCTCACAGATGCCCTGTTGAAACGAGGTAAGCTGTT CCAGACCTTAGCTGGAGTAACGGGGTCCGGTAAGAGTTATATGATGGCTA GTGTCATCTCCGCGGCCCAGGTTCCTACCCTGGTTTTGGCACCTAACAAA ACACTTGCAGCACAATTGTATAACCAATTCAAACTATTTTTCCCGCGAAA TCGTGTTGAGTTTTTTGTCTCCAACTTCAAACACTATCAACCAGAGGCGT ACTTGCCTGCCAGTGATAAATACATTGCAAAGTCGAGCTCCATTGACCAA GAGTTGGATCGACTTAGACACGCAGCCACTAAAAGTCTGTTCGAAAGAAA TGATACGATTGTCGTTGCCAGCGTTAGCTCCATATATGGTCTGGGTTTGC CGTCAGAATACCTTCAAGCTGCGTTCCCAGCTCGAAAGGGTGAATTTATG ACACCACTGGTGCTTGTGGACAGTCTACGCAATCTGGGCTATATTGAAGA TAGTGCCAAAATAGAGACAACAAGAGGGCTTTTTCGCCACATCCACCAAG TCGTCGACGTTTCGCCTCCATGGGAGCAACCTGGAATTCTCTACCGATTC ATGTTTGATGACTGTAGGCTTGCAACGTTACAGCGTGTGAATGTCGGAGC AGATTCAATTGACGATTTGGATGAACAGCTGGTTTTATATCCAGCAAAAC ATTTTGTGACTCCCAAGCATCGTATTGAAGAAGCAATCGACAAGATTCAG GAAGAAACTCGCTCGTCCGTGCACAATTTTGTCGCTCAAGGAAAAAAATT GGAGGCCACCCGTCTCCAGGAAAGAGTGGATACAGACATGCAAATGCTGA GGAAAGTGGGCTTCTGTCATGGTATTGAAAACTATTCATTACACCTCTCA GGACGCGACCATCGACAACCGCCCGAAACTCTTCTGGACTACATGCCAAA AGATGACAAATGGTTATTGTTCATAGATGAGAGCCACATCACAGTTCCCC AACTAGGAGGCATGTACGCTGGAAACGCTGCAAGAAAGAAGAAGCTTGTT CAATACGGATTTCGGCTTCCGTCTGCCATGGAGAATCGTCCCTTGAACTC TCGCGAGTTCTGGGCAAAGACACATCAGACAATCTTTGTTTCAGCTACTC CCGGTACTTTCGAGCGGGAAAGAAGTAGGTCTGATGGTGTAATAGAAGCT GTTATACGCCCAACTGGTGTGTTGGACCCTACAGTCGAAGTAGTTGGAAC AAATGGTCAAATCGAACACCTCACATCGCAACTAGCCAAGGTTGCATCTG TTGGAGGGAAAGCGATTGTCACCACAGTAACCAAACGCTTCGCTGAAGAT TTGGCCGACTGTCTCTCGAGCAAGGCACCCGTCACCGGCATTCTTAATAG ACCGTTGAACGTCGCCTACCTGCATTCTGGAATCGATTCTGTCGGTCGCA TGCATGTCTTAGAAGCAATGAGAGAGAGCTGCGACAAAGAAGTTGCTCAG ACTCACCATGCTGATACCCGTGAGAATAGGAATCAGCTTGACGTTGTTGT CGGTGTAAATTTACTGCGTGAAGGGATCGATCTCCCAGCTGTTCAGCTTG TTGCCATTTTGGACGCCGACTCTGAAGGCTTCTTGAGGGGAGAAACTGCG CTCATTCAGATGATAGGCAGGGCAGCGCGCAATATCAAAGGGCATGTTGT AATGTACGCAGATGTCGTAACCGTAGCAATGCGAAGGGCCATAGATGAGA CTGCGAGACGAAGAAAGTTGCAGATCGCCTACAATTCATTATATAGGGTT GAACCTTCCCCTGTTGGGGGTTCAGATACTTTTGGCAATGAAACTTCCGA ACCTTTGTTGGAACGCATTAGAAGTATGAAACTGCGGGGCAAAGGCACCC AACAAGAATATCAATTTGATCAACCTCCTAATCTATCAGAGTCGGTAATG CAGTCACATAGGTCGGCGGAAGAACAATCTATCAGTGAATCAGACGTGGA GAGCATTAGCAAGAAGATGTTAAAGGCTGCAGAAACAGAAGATTTTGAAA CAGCCGCCCTCTTGCGAGATCGGCTAGTTTCGATGGGAGTTTTGAAGAAG TAG back to topprotein sequence of Ggra5666.t1 >Ggra5666.t1 ID=Ggra5666.t1|Name=Ggra5666.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=851bp
MAPLFLSPPTLPSQRRPAHRNVVRCNHPARAPPSLPAPFREVSRSPPGLT VLYTRANAPITSSNLPQLLAYVRERPRVLLAVAPHATLPHGPSEALASLG VRLVRRSVLSGPSRRVRTPFVPQPLYSKRPSVPKHRFELHAPYALAGSQP RAVRFLTDALLKRGKLFQTLAGVTGSGKSYMMASVISAAQVPTLVLAPNK TLAAQLYNQFKLFFPRNRVEFFVSNFKHYQPEAYLPASDKYIAKSSSIDQ ELDRLRHAATKSLFERNDTIVVASVSSIYGLGLPSEYLQAAFPARKGEFM TPLVLVDSLRNLGYIEDSAKIETTRGLFRHIHQVVDVSPPWEQPGILYRF MFDDCRLATLQRVNVGADSIDDLDEQLVLYPAKHFVTPKHRIEEAIDKIQ EETRSSVHNFVAQGKKLEATRLQERVDTDMQMLRKVGFCHGIENYSLHLS GRDHRQPPETLLDYMPKDDKWLLFIDESHITVPQLGGMYAGNAARKKKLV QYGFRLPSAMENRPLNSREFWAKTHQTIFVSATPGTFERERSRSDGVIEA VIRPTGVLDPTVEVVGTNGQIEHLTSQLAKVASVGGKAIVTTVTKRFAED LADCLSSKAPVTGILNRPLNVAYLHSGIDSVGRMHVLEAMRESCDKEVAQ THHADTRENRNQLDVVVGVNLLREGIDLPAVQLVAILDADSEGFLRGETA LIQMIGRAARNIKGHVVMYADVVTVAMRRAIDETARRRKLQIAYNSLYRV EPSPVGGSDTFGNETSEPLLERIRSMKLRGKGTQQEYQFDQPPNLSESVM QSHRSAEEQSISESDVESISKKMLKAAETEDFETAALLRDRLVSMGVLKK * back to topmRNA from alignment at tig00000842_pilon:1296326..1298878+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra5666.t1 ID=Ggra5666.t1|Name=Ggra5666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2553bp|location=Sequence derived from alignment at tig00000842_pilon:1296326..1298878+ (Gracilaria gracilis GNS1m male) ATGGCGCCTCTGTTCCTCTCCCCGCCCACGCTTCCTTCCCAACGCCGCCC
CGCTCATCGCAATGTTGTGCGATGCAATCATCCCGCGCGTGCGCCTCCCT
CCCTGCCCGCCCCGTTCCGTGAGGTCTCTCGTTCACCGCCTGGCCTGACC
GTCCTGTACACACGCGCCAATGCCCCCATCACATCTTCGAACCTGCCACA
ACTGCTCGCGTATGTACGCGAGCGACCTCGGGTACTCCTCGCTGTCGCTC
CACATGCCACTCTCCCACACGGCCCATCGGAAGCGCTTGCCAGTCTGGGC
GTTCGTCTCGTTCGGCGTTCGGTTTTATCAGGCCCGTCTCGTCGAGTTCG
CACACCGTTTGTTCCGCAACCACTGTATAGTAAGCGCCCTTCAGTTCCGA
AGCATCGTTTTGAGCTGCATGCGCCCTACGCGCTTGCTGGTAGTCAGCCT
CGTGCTGTACGTTTCCTCACAGATGCCCTGTTGAAACGAGGTAAGCTGTT
CCAGACCTTAGCTGGAGTAACGGGGTCCGGTAAGAGTTATATGATGGCTA
GTGTCATCTCCGCGGCCCAGGTTCCTACCCTGGTTTTGGCACCTAACAAA
ACACTTGCAGCACAATTGTATAACCAATTCAAACTATTTTTCCCGCGAAA
TCGTGTTGAGTTTTTTGTCTCCAACTTCAAACACTATCAACCAGAGGCGT
ACTTGCCTGCCAGTGATAAATACATTGCAAAGTCGAGCTCCATTGACCAA
GAGTTGGATCGACTTAGACACGCAGCCACTAAAAGTCTGTTCGAAAGAAA
TGATACGATTGTCGTTGCCAGCGTTAGCTCCATATATGGTCTGGGTTTGC
CGTCAGAATACCTTCAAGCTGCGTTCCCAGCTCGAAAGGGTGAATTTATG
ACACCACTGGTGCTTGTGGACAGTCTACGCAATCTGGGCTATATTGAAGA
TAGTGCCAAAATAGAGACAACAAGAGGGCTTTTTCGCCACATCCACCAAG
TCGTCGACGTTTCGCCTCCATGGGAGCAACCTGGAATTCTCTACCGATTC
ATGTTTGATGACTGTAGGCTTGCAACGTTACAGCGTGTGAATGTCGGAGC
AGATTCAATTGACGATTTGGATGAACAGCTGGTTTTATATCCAGCAAAAC
ATTTTGTGACTCCCAAGCATCGTATTGAAGAAGCAATCGACAAGATTCAG
GAAGAAACTCGCTCGTCCGTGCACAATTTTGTCGCTCAAGGAAAAAAATT
GGAGGCCACCCGTCTCCAGGAAAGAGTGGATACAGACATGCAAATGCTGA
GGAAAGTGGGCTTCTGTCATGGTATTGAAAACTATTCATTACACCTCTCA
GGACGCGACCATCGACAACCGCCCGAAACTCTTCTGGACTACATGCCAAA
AGATGACAAATGGTTATTGTTCATAGATGAGAGCCACATCACAGTTCCCC
AACTAGGAGGCATGTACGCTGGAAACGCTGCAAGAAAGAAGAAGCTTGTT
CAATACGGATTTCGGCTTCCGTCTGCCATGGAGAATCGTCCCTTGAACTC
TCGCGAGTTCTGGGCAAAGACACATCAGACAATCTTTGTTTCAGCTACTC
CCGGTACTTTCGAGCGGGAAAGAAGTAGGTCTGATGGTGTAATAGAAGCT
GTTATACGCCCAACTGGTGTGTTGGACCCTACAGTCGAAGTAGTTGGAAC
AAATGGTCAAATCGAACACCTCACATCGCAACTAGCCAAGGTTGCATCTG
TTGGAGGGAAAGCGATTGTCACCACAGTAACCAAACGCTTCGCTGAAGAT
TTGGCCGACTGTCTCTCGAGCAAGGCACCCGTCACCGGCATTCTTAATAG
ACCGTTGAACGTCGCCTACCTGCATTCTGGAATCGATTCTGTCGGTCGCA
TGCATGTCTTAGAAGCAATGAGAGAGAGCTGCGACAAAGAAGTTGCTCAG
ACTCACCATGCTGATACCCGTGAGAATAGGAATCAGCTTGACGTTGTTGT
CGGTGTAAATTTACTGCGTGAAGGGATCGATCTCCCAGCTGTTCAGCTTG
TTGCCATTTTGGACGCCGACTCTGAAGGCTTCTTGAGGGGAGAAACTGCG
CTCATTCAGATGATAGGCAGGGCAGCGCGCAATATCAAAGGGCATGTTGT
AATGTACGCAGATGTCGTAACCGTAGCAATGCGAAGGGCCATAGATGAGA
CTGCGAGACGAAGAAAGTTGCAGATCGCCTACAATTCATTATATAGGGTT
GAACCTTCCCCTGTTGGGGGTTCAGATACTTTTGGCAATGAAACTTCCGA
ACCTTTGTTGGAACGCATTAGAAGTATGAAACTGCGGGGCAAAGGCACCC
AACAAGAATATCAATTTGATCAACCTCCTAATCTATCAGAGTCGGTAATG
CAGTCACATAGGTCGGCGGAAGAACAATCTATCAGTGAATCAGACGTGGA
GAGCATTAGCAAGAAGATGTTAAAGGCTGCAGAAACAGAAGATTTTGAAA
CAGCCGCCCTCTTGCGAGATCGGCTAGTTTCGATGGGAGTTTTGAAGAAG
TAG back to topCoding sequence (CDS) from alignment at tig00000842_pilon:1296326..1298878+ >Ggra5666.t1 ID=Ggra5666.t1|Name=Ggra5666.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2553bp|location=Sequence derived from alignment at tig00000842_pilon:1296326..1298878+ (Gracilaria gracilis GNS1m male) ATGGCGCCTCTGTTCCTCTCCCCGCCCACGCTTCCTTCCCAACGCCGCCC CGCTCATCGCAATGTTGTGCGATGCAATCATCCCGCGCGTGCGCCTCCCT CCCTGCCCGCCCCGTTCCGTGAGGTCTCTCGTTCACCGCCTGGCCTGACC GTCCTGTACACACGCGCCAATGCCCCCATCACATCTTCGAACCTGCCACA ACTGCTCGCGTATGTACGCGAGCGACCTCGGGTACTCCTCGCTGTCGCTC CACATGCCACTCTCCCACACGGCCCATCGGAAGCGCTTGCCAGTCTGGGC GTTCGTCTCGTTCGGCGTTCGGTTTTATCAGGCCCGTCTCGTCGAGTTCG CACACCGTTTGTTCCGCAACCACTGTATAGTAAGCGCCCTTCAGTTCCGA AGCATCGTTTTGAGCTGCATGCGCCCTACGCGCTTGCTGGTAGTCAGCCT CGTGCTGTACGTTTCCTCACAGATGCCCTGTTGAAACGAGGTAAGCTGTT CCAGACCTTAGCTGGAGTAACGGGGTCCGGTAAGAGTTATATGATGGCTA GTGTCATCTCCGCGGCCCAGGTTCCTACCCTGGTTTTGGCACCTAACAAA ACACTTGCAGCACAATTGTATAACCAATTCAAACTATTTTTCCCGCGAAA TCGTGTTGAGTTTTTTGTCTCCAACTTCAAACACTATCAACCAGAGGCGT ACTTGCCTGCCAGTGATAAATACATTGCAAAGTCGAGCTCCATTGACCAA GAGTTGGATCGACTTAGACACGCAGCCACTAAAAGTCTGTTCGAAAGAAA TGATACGATTGTCGTTGCCAGCGTTAGCTCCATATATGGTCTGGGTTTGC CGTCAGAATACCTTCAAGCTGCGTTCCCAGCTCGAAAGGGTGAATTTATG ACACCACTGGTGCTTGTGGACAGTCTACGCAATCTGGGCTATATTGAAGA TAGTGCCAAAATAGAGACAACAAGAGGGCTTTTTCGCCACATCCACCAAG TCGTCGACGTTTCGCCTCCATGGGAGCAACCTGGAATTCTCTACCGATTC ATGTTTGATGACTGTAGGCTTGCAACGTTACAGCGTGTGAATGTCGGAGC AGATTCAATTGACGATTTGGATGAACAGCTGGTTTTATATCCAGCAAAAC ATTTTGTGACTCCCAAGCATCGTATTGAAGAAGCAATCGACAAGATTCAG GAAGAAACTCGCTCGTCCGTGCACAATTTTGTCGCTCAAGGAAAAAAATT GGAGGCCACCCGTCTCCAGGAAAGAGTGGATACAGACATGCAAATGCTGA GGAAAGTGGGCTTCTGTCATGGTATTGAAAACTATTCATTACACCTCTCA GGACGCGACCATCGACAACCGCCCGAAACTCTTCTGGACTACATGCCAAA AGATGACAAATGGTTATTGTTCATAGATGAGAGCCACATCACAGTTCCCC AACTAGGAGGCATGTACGCTGGAAACGCTGCAAGAAAGAAGAAGCTTGTT CAATACGGATTTCGGCTTCCGTCTGCCATGGAGAATCGTCCCTTGAACTC TCGCGAGTTCTGGGCAAAGACACATCAGACAATCTTTGTTTCAGCTACTC CCGGTACTTTCGAGCGGGAAAGAAGTAGGTCTGATGGTGTAATAGAAGCT GTTATACGCCCAACTGGTGTGTTGGACCCTACAGTCGAAGTAGTTGGAAC AAATGGTCAAATCGAACACCTCACATCGCAACTAGCCAAGGTTGCATCTG TTGGAGGGAAAGCGATTGTCACCACAGTAACCAAACGCTTCGCTGAAGAT TTGGCCGACTGTCTCTCGAGCAAGGCACCCGTCACCGGCATTCTTAATAG ACCGTTGAACGTCGCCTACCTGCATTCTGGAATCGATTCTGTCGGTCGCA TGCATGTCTTAGAAGCAATGAGAGAGAGCTGCGACAAAGAAGTTGCTCAG ACTCACCATGCTGATACCCGTGAGAATAGGAATCAGCTTGACGTTGTTGT CGGTGTAAATTTACTGCGTGAAGGGATCGATCTCCCAGCTGTTCAGCTTG TTGCCATTTTGGACGCCGACTCTGAAGGCTTCTTGAGGGGAGAAACTGCG CTCATTCAGATGATAGGCAGGGCAGCGCGCAATATCAAAGGGCATGTTGT AATGTACGCAGATGTCGTAACCGTAGCAATGCGAAGGGCCATAGATGAGA CTGCGAGACGAAGAAAGTTGCAGATCGCCTACAATTCATTATATAGGGTT GAACCTTCCCCTGTTGGGGGTTCAGATACTTTTGGCAATGAAACTTCCGA ACCTTTGTTGGAACGCATTAGAAGTATGAAACTGCGGGGCAAAGGCACCC AACAAGAATATCAATTTGATCAACCTCCTAATCTATCAGAGTCGGTAATG CAGTCACATAGGTCGGCGGAAGAACAATCTATCAGTGAATCAGACGTGGA GAGCATTAGCAAGAAGATGTTAAAGGCTGCAGAAACAGAAGATTTTGAAA CAGCCGCCCTCTTGCGAGATCGGCTAGTTTCGATGGGAGTTTTGAAGAAG TAG back to top
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