Ggra5653.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5653.t1
Unique NameGgra5653.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1262111..1262995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog329726.AM1_0203
PFAMsHydrolase_4
Max annot lvl1117|Cyanobacteria
Evalue2.43e-94
EggNOG OGsCOG1073@1|root,COG1073@2|Bacteria,1G9XB@1117|Cyanobacteria
Descriptionalpha beta
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5653Ggra5653Gracilaria gracilis GNS1m malegenetig00000842_pilon 1262111..1262995 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5653.t1.stop1Ggra5653.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1262111..1262113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5653.t1.CDS1Ggra5653.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1262111..1262995 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5653.t1.exon1Ggra5653.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1262111..1262995 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5653.t1.start1Ggra5653.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1262993..1262995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5653.t1Ggra5653.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1262111..1262995 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5653.t1 ID=Ggra5653.t1|Name=Ggra5653.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MVLGTLLSNMMVKPYQDGGIFESPEQHGLPFEDVSFETEDGLTLKGWLIS
AEPNKVIIQSHFGIQANRCGWQRKGKGLFPLWKADISFLKHVKYLNSRGY
TVLMFDMRNHGESAKSIDIPWASYGYSEALDVIAAVKYIEGLEKYKNADI
GLMSMGIGAAASTFAYGRDDGLGKHINIKAMVAIQPLTHKGFICVLGFPT
FMRRMVDSVTNRRLQRDMDERSFVRLAKNITIPTLVMQNKNNGMTGFEMV
EDFYNELTVTKEMKWVDVEKSRFAGFNYVTQHPEEVLLWFDKFM*
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spliced messenger RNA

>Ggra5653.t1 ID=Ggra5653.t1|Name=Ggra5653.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000842_pilon:1262111..1262995- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTTGGTACATTACTGTCCAATATGATGGTGAAGCCATATCAGGA
CGGCGGCATTTTCGAATCTCCAGAACAGCATGGCCTACCTTTTGAAGATG
TGTCCTTCGAAACGGAAGACGGTTTGACTTTGAAAGGGTGGCTGATTTCA
GCCGAACCCAACAAGGTTATCATTCAGAGTCACTTTGGTATACAGGCCAA
TCGTTGTGGATGGCAACGTAAAGGCAAGGGCCTGTTCCCCTTGTGGAAAG
CGGACATATCTTTCCTCAAGCATGTCAAATATCTCAACTCCAGGGGTTAC
ACAGTTCTCATGTTCGACATGCGAAATCACGGCGAAAGTGCAAAGTCTAT
TGACATACCATGGGCGTCGTACGGATACAGTGAGGCCCTCGATGTAATTG
CCGCCGTGAAATATATTGAGGGTCTTGAGAAGTATAAGAACGCCGACATT
GGTCTGATGTCTATGGGCATAGGAGCAGCTGCCTCAACCTTCGCATACGG
AAGAGACGATGGCTTGGGGAAACATATCAACATAAAGGCAATGGTTGCCA
TTCAACCACTTACGCACAAAGGCTTCATTTGTGTGTTGGGCTTTCCAACA
TTTATGCGCAGAATGGTTGATAGTGTTACAAACCGCCGTTTGCAGCGTGA
CATGGATGAACGATCATTTGTGCGTTTGGCAAAGAATATCACAATTCCAA
CGCTGGTGATGCAGAACAAAAACAACGGAATGACAGGTTTCGAGATGGTG
GAAGACTTTTATAATGAACTTACTGTAACGAAAGAAATGAAGTGGGTTGA
TGTGGAAAAGAGTCGTTTTGCTGGCTTCAACTACGTAACCCAGCACCCGG
AGGAAGTGTTGCTCTGGTTTGACAAATTCATGTAA
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protein sequence of Ggra5653.t1

>Ggra5653.t1 ID=Ggra5653.t1|Name=Ggra5653.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MVLGTLLSNMMVKPYQDGGIFESPEQHGLPFEDVSFETEDGLTLKGWLIS
AEPNKVIIQSHFGIQANRCGWQRKGKGLFPLWKADISFLKHVKYLNSRGY
TVLMFDMRNHGESAKSIDIPWASYGYSEALDVIAAVKYIEGLEKYKNADI
GLMSMGIGAAASTFAYGRDDGLGKHINIKAMVAIQPLTHKGFICVLGFPT
FMRRMVDSVTNRRLQRDMDERSFVRLAKNITIPTLVMQNKNNGMTGFEMV
EDFYNELTVTKEMKWVDVEKSRFAGFNYVTQHPEEVLLWFDKFM*
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mRNA from alignment at tig00000842_pilon:1262111..1262995-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5653.t1 ID=Ggra5653.t1|Name=Ggra5653.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000842_pilon:1262111..1262995- (Gracilaria gracilis GNS1m male)
ATGGTGCTTGGTACATTACTGTCCAATATGATGGTGAAGCCATATCAGGA
CGGCGGCATTTTCGAATCTCCAGAACAGCATGGCCTACCTTTTGAAGATG
TGTCCTTCGAAACGGAAGACGGTTTGACTTTGAAAGGGTGGCTGATTTCA
GCCGAACCCAACAAGGTTATCATTCAGAGTCACTTTGGTATACAGGCCAA
TCGTTGTGGATGGCAACGTAAAGGCAAGGGCCTGTTCCCCTTGTGGAAAG
CGGACATATCTTTCCTCAAGCATGTCAAATATCTCAACTCCAGGGGTTAC
ACAGTTCTCATGTTCGACATGCGAAATCACGGCGAAAGTGCAAAGTCTAT
TGACATACCATGGGCGTCGTACGGATACAGTGAGGCCCTCGATGTAATTG
CCGCCGTGAAATATATTGAGGGTCTTGAGAAGTATAAGAACGCCGACATT
GGTCTGATGTCTATGGGCATAGGAGCAGCTGCCTCAACCTTCGCATACGG
AAGAGACGATGGCTTGGGGAAACATATCAACATAAAGGCAATGGTTGCCA
TTCAACCACTTACGCACAAAGGCTTCATTTGTGTGTTGGGCTTTCCAACA
TTTATGCGCAGAATGGTTGATAGTGTTACAAACCGCCGTTTGCAGCGTGA
CATGGATGAACGATCATTTGTGCGTTTGGCAAAGAATATCACAATTCCAA
CGCTGGTGATGCAGAACAAAAACAACGGAATGACAGGTTTCGAGATGGTG
GAAGACTTTTATAATGAACTTACTGTAACGAAAGAAATGAAGTGGGTTGA
TGTGGAAAAGAGTCGTTTTGCTGGCTTCAACTACGTAACCCAGCACCCGG
AGGAAGTGTTGCTCTGGTTTGACAAATTCATGTAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1262111..1262995-

>Ggra5653.t1 ID=Ggra5653.t1|Name=Ggra5653.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000842_pilon:1262111..1262995- (Gracilaria gracilis GNS1m male)
ATGGTGCTTGGTACATTACTGTCCAATATGATGGTGAAGCCATATCAGGA
CGGCGGCATTTTCGAATCTCCAGAACAGCATGGCCTACCTTTTGAAGATG
TGTCCTTCGAAACGGAAGACGGTTTGACTTTGAAAGGGTGGCTGATTTCA
GCCGAACCCAACAAGGTTATCATTCAGAGTCACTTTGGTATACAGGCCAA
TCGTTGTGGATGGCAACGTAAAGGCAAGGGCCTGTTCCCCTTGTGGAAAG
CGGACATATCTTTCCTCAAGCATGTCAAATATCTCAACTCCAGGGGTTAC
ACAGTTCTCATGTTCGACATGCGAAATCACGGCGAAAGTGCAAAGTCTAT
TGACATACCATGGGCGTCGTACGGATACAGTGAGGCCCTCGATGTAATTG
CCGCCGTGAAATATATTGAGGGTCTTGAGAAGTATAAGAACGCCGACATT
GGTCTGATGTCTATGGGCATAGGAGCAGCTGCCTCAACCTTCGCATACGG
AAGAGACGATGGCTTGGGGAAACATATCAACATAAAGGCAATGGTTGCCA
TTCAACCACTTACGCACAAAGGCTTCATTTGTGTGTTGGGCTTTCCAACA
TTTATGCGCAGAATGGTTGATAGTGTTACAAACCGCCGTTTGCAGCGTGA
CATGGATGAACGATCATTTGTGCGTTTGGCAAAGAATATCACAATTCCAA
CGCTGGTGATGCAGAACAAAAACAACGGAATGACAGGTTTCGAGATGGTG
GAAGACTTTTATAATGAACTTACTGTAACGAAAGAAATGAAGTGGGTTGA
TGTGGAAAAGAGTCGTTTTGCTGGCTTCAACTACGTAACCCAGCACCCGG
AGGAAGTGTTGCTCTGGTTTGACAAATTCATGTAA
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