Ggra5651.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5651.t1
Unique Name	Ggra5651.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	536

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:1255950..1257557 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_006823243.1
PFAMs	Nucleotid_trans
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11714
Evalue	3.63e-25
EggNOG OGs	2CZA0@1\|root,2S9AH@2759\|Eukaryota,3ABW2@33154\|Opisthokonta,3BVK1@33208\|Metazoa,3DCNX@33213\|Bilateria
Description	Nucleotide-diphospho-sugar transferase
COG category	S
CAZy	GT77
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5651	Ggra5651	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 1255950..1257557 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5651.t1.stop1	Ggra5651.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 1255950..1255952 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5651.t1.CDS1	Ggra5651.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 1255950..1257557 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5651.t1.exon1	Ggra5651.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 1255950..1257557 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5651.t1.start1	Ggra5651.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 1257555..1257557 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5651.t1	Ggra5651.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 1255950..1257557 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:1255950..1257557-
coding sequence from alignment at tig00000842_pilon:1255950..1257557-

mRNA sequence

>Ggra5651.t1 ID=Ggra5651.t1|Name=Ggra5651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=536bp
MHNASSGGFFDWVLNAWTPPRDSNDIFLIVDASAQAPLSSAYYSYLRSVT
KHHTEAQVAGYALSPVSVKRKGALDSNVRVSGAAPIFFYQNAPLVPSLAV
PAHVWRSFQTWFYAHRSEWFLWPVVVSPRDKKDVAWSHYHGTSRAHWSLW
FSRFCAEFELFNVYPTRKPVQSLSSAVEEQSMQIEAFNFDGSLATKKSSV
SAENIAKIVELGRRMGGSVSMTLVNDAFLETARSWICNVDVAKIRPPGVV
WFTVDDTAYNVLKDVNGSYAIRMNEFRGGRQREGTSYGTPGYWLLMLERT
KLIQSILDSGIGVFAFETDQIWLRDPIPFVSRLVHSGDEVDIVGTLDTRH
EIGGNFLYLNPTLAMRRTWREVCRRFEKSFKASRLQGHSAKYRRYVENDQ
SILTKLVFYDEEFKNKNPTIFRALDTDLFVDGRWYDKKKHYYTSSKSRSP
ILINNNFLVGIENKKQRAIKNNHWFLSENKCNVERVKKAIRINEERGGIP
LPIDGEIPVSRIEGADIEAGLDAALVAIEKERVNS*

spliced messenger RNA

>Ggra5651.t1 ID=Ggra5651.t1|Name=Ggra5651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000842_pilon:1255950..1257557- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAACGCATCGTCAGGTGGGTTCTTCGATTGGGTTCTGAACGCATG
GACCCCTCCCCGTGACAGTAATGATATTTTTCTCATTGTTGATGCTTCCG
CGCAAGCTCCTTTGTCATCGGCGTACTATAGCTATCTGAGGTCAGTAACA
AAACATCATACGGAAGCACAAGTAGCTGGTTATGCGCTCTCACCGGTCTC
TGTCAAACGGAAGGGCGCCCTTGACAGTAATGTCCGTGTTTCTGGTGCTG
CTCCGATCTTCTTCTATCAAAATGCACCACTAGTTCCATCTCTCGCCGTG
CCCGCTCATGTGTGGCGATCTTTTCAAACTTGGTTCTATGCGCACCGTTC
GGAATGGTTTCTCTGGCCTGTTGTCGTTTCGCCTCGGGATAAAAAGGACG
TGGCCTGGAGTCACTATCACGGTACTTCTCGAGCGCATTGGTCACTTTGG
TTTTCAAGGTTTTGCGCAGAGTTCGAGTTGTTTAATGTTTACCCGACCCG
AAAACCAGTTCAGTCATTGTCTTCAGCTGTTGAAGAGCAATCAATGCAGA
TAGAAGCATTTAATTTTGATGGGAGTCTAGCGACGAAGAAGTCAAGCGTT
TCTGCCGAGAACATAGCCAAAATTGTTGAATTGGGCAGACGCATGGGTGG
ATCCGTTTCAATGACCCTTGTGAATGATGCGTTTCTAGAAACTGCAAGAA
GCTGGATTTGTAATGTTGACGTAGCCAAAATCAGACCTCCTGGTGTAGTA
TGGTTCACTGTGGATGATACGGCCTATAATGTGTTGAAGGATGTTAACGG
CTCGTACGCAATACGTATGAATGAATTTCGAGGAGGCCGACAGCGAGAAG
GAACATCGTACGGAACGCCAGGATATTGGTTATTGATGCTGGAACGTACT
AAACTGATTCAGAGTATCCTTGACAGTGGTATCGGGGTGTTTGCATTTGA
AACAGACCAGATCTGGCTGCGAGATCCCATTCCATTCGTTAGTCGACTGG
TACATAGCGGGGACGAGGTCGATATCGTAGGGACGCTCGACACTCGTCAT
GAAATTGGAGGTAACTTTCTCTACTTAAATCCCACGCTAGCAATGCGAAG
GACGTGGCGTGAAGTTTGTAGGCGATTCGAAAAGTCTTTCAAAGCTAGTC
GGCTTCAAGGACACTCTGCAAAGTACAGACGGTATGTGGAGAATGATCAG
TCAATCTTAACTAAGCTAGTATTCTACGATGAGGAATTCAAGAACAAGAA
CCCTACAATATTCCGTGCTTTGGACACTGACCTGTTCGTTGATGGACGGT
GGTATGACAAGAAGAAGCACTATTATACATCTTCCAAGTCGAGAAGCCCG
ATTCTGATCAACAACAACTTTCTGGTTGGAATTGAAAATAAGAAGCAACG
TGCCATCAAGAACAATCATTGGTTCCTCTCTGAGAATAAGTGCAACGTTG
AACGCGTTAAGAAGGCGATAAGAATCAATGAGGAACGCGGCGGAATACCT
TTACCCATCGACGGCGAGATCCCAGTCTCTAGAATAGAGGGAGCTGACAT
CGAAGCTGGGCTAGACGCAGCACTTGTGGCTATCGAAAAGGAGAGAGTAA
ATTCTTAG

protein sequence of Ggra5651.t1

>Ggra5651.t1 ID=Ggra5651.t1|Name=Ggra5651.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=536bp
MHNASSGGFFDWVLNAWTPPRDSNDIFLIVDASAQAPLSSAYYSYLRSVT
KHHTEAQVAGYALSPVSVKRKGALDSNVRVSGAAPIFFYQNAPLVPSLAV
PAHVWRSFQTWFYAHRSEWFLWPVVVSPRDKKDVAWSHYHGTSRAHWSLW
FSRFCAEFELFNVYPTRKPVQSLSSAVEEQSMQIEAFNFDGSLATKKSSV
SAENIAKIVELGRRMGGSVSMTLVNDAFLETARSWICNVDVAKIRPPGVV
WFTVDDTAYNVLKDVNGSYAIRMNEFRGGRQREGTSYGTPGYWLLMLERT
KLIQSILDSGIGVFAFETDQIWLRDPIPFVSRLVHSGDEVDIVGTLDTRH
EIGGNFLYLNPTLAMRRTWREVCRRFEKSFKASRLQGHSAKYRRYVENDQ
SILTKLVFYDEEFKNKNPTIFRALDTDLFVDGRWYDKKKHYYTSSKSRSP
ILINNNFLVGIENKKQRAIKNNHWFLSENKCNVERVKKAIRINEERGGIP
LPIDGEIPVSRIEGADIEAGLDAALVAIEKERVNS*

mRNA from alignment at tig00000842_pilon:1255950..1257557-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5651.t1 ID=Ggra5651.t1|Name=Ggra5651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000842_pilon:1255950..1257557- (Gracilaria gracilis GNS1m male)
ATGCACAACGCATCGTCAGGTGGGTTCTTCGATTGGGTTCTGAACGCATG
GACCCCTCCCCGTGACAGTAATGATATTTTTCTCATTGTTGATGCTTCCG
CGCAAGCTCCTTTGTCATCGGCGTACTATAGCTATCTGAGGTCAGTAACA
AAACATCATACGGAAGCACAAGTAGCTGGTTATGCGCTCTCACCGGTCTC
TGTCAAACGGAAGGGCGCCCTTGACAGTAATGTCCGTGTTTCTGGTGCTG
CTCCGATCTTCTTCTATCAAAATGCACCACTAGTTCCATCTCTCGCCGTG
CCCGCTCATGTGTGGCGATCTTTTCAAACTTGGTTCTATGCGCACCGTTC
GGAATGGTTTCTCTGGCCTGTTGTCGTTTCGCCTCGGGATAAAAAGGACG
TGGCCTGGAGTCACTATCACGGTACTTCTCGAGCGCATTGGTCACTTTGG
TTTTCAAGGTTTTGCGCAGAGTTCGAGTTGTTTAATGTTTACCCGACCCG
AAAACCAGTTCAGTCATTGTCTTCAGCTGTTGAAGAGCAATCAATGCAGA
TAGAAGCATTTAATTTTGATGGGAGTCTAGCGACGAAGAAGTCAAGCGTT
TCTGCCGAGAACATAGCCAAAATTGTTGAATTGGGCAGACGCATGGGTGG
ATCCGTTTCAATGACCCTTGTGAATGATGCGTTTCTAGAAACTGCAAGAA
GCTGGATTTGTAATGTTGACGTAGCCAAAATCAGACCTCCTGGTGTAGTA
TGGTTCACTGTGGATGATACGGCCTATAATGTGTTGAAGGATGTTAACGG
CTCGTACGCAATACGTATGAATGAATTTCGAGGAGGCCGACAGCGAGAAG
GAACATCGTACGGAACGCCAGGATATTGGTTATTGATGCTGGAACGTACT
AAACTGATTCAGAGTATCCTTGACAGTGGTATCGGGGTGTTTGCATTTGA
AACAGACCAGATCTGGCTGCGAGATCCCATTCCATTCGTTAGTCGACTGG
TACATAGCGGGGACGAGGTCGATATCGTAGGGACGCTCGACACTCGTCAT
GAAATTGGAGGTAACTTTCTCTACTTAAATCCCACGCTAGCAATGCGAAG
GACGTGGCGTGAAGTTTGTAGGCGATTCGAAAAGTCTTTCAAAGCTAGTC
GGCTTCAAGGACACTCTGCAAAGTACAGACGGTATGTGGAGAATGATCAG
TCAATCTTAACTAAGCTAGTATTCTACGATGAGGAATTCAAGAACAAGAA
CCCTACAATATTCCGTGCTTTGGACACTGACCTGTTCGTTGATGGACGGT
GGTATGACAAGAAGAAGCACTATTATACATCTTCCAAGTCGAGAAGCCCG
ATTCTGATCAACAACAACTTTCTGGTTGGAATTGAAAATAAGAAGCAACG
TGCCATCAAGAACAATCATTGGTTCCTCTCTGAGAATAAGTGCAACGTTG
AACGCGTTAAGAAGGCGATAAGAATCAATGAGGAACGCGGCGGAATACCT
TTACCCATCGACGGCGAGATCCCAGTCTCTAGAATAGAGGGAGCTGACAT
CGAAGCTGGGCTAGACGCAGCACTTGTGGCTATCGAAAAGGAGAGAGTAA
ATTCTTAG

Coding sequence (CDS) from alignment at tig00000842_pilon:1255950..1257557-

>Ggra5651.t1 ID=Ggra5651.t1|Name=Ggra5651.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00000842_pilon:1255950..1257557- (Gracilaria gracilis GNS1m male)
ATGCACAACGCATCGTCAGGTGGGTTCTTCGATTGGGTTCTGAACGCATG
GACCCCTCCCCGTGACAGTAATGATATTTTTCTCATTGTTGATGCTTCCG
CGCAAGCTCCTTTGTCATCGGCGTACTATAGCTATCTGAGGTCAGTAACA
AAACATCATACGGAAGCACAAGTAGCTGGTTATGCGCTCTCACCGGTCTC
TGTCAAACGGAAGGGCGCCCTTGACAGTAATGTCCGTGTTTCTGGTGCTG
CTCCGATCTTCTTCTATCAAAATGCACCACTAGTTCCATCTCTCGCCGTG
CCCGCTCATGTGTGGCGATCTTTTCAAACTTGGTTCTATGCGCACCGTTC
GGAATGGTTTCTCTGGCCTGTTGTCGTTTCGCCTCGGGATAAAAAGGACG
TGGCCTGGAGTCACTATCACGGTACTTCTCGAGCGCATTGGTCACTTTGG
TTTTCAAGGTTTTGCGCAGAGTTCGAGTTGTTTAATGTTTACCCGACCCG
AAAACCAGTTCAGTCATTGTCTTCAGCTGTTGAAGAGCAATCAATGCAGA
TAGAAGCATTTAATTTTGATGGGAGTCTAGCGACGAAGAAGTCAAGCGTT
TCTGCCGAGAACATAGCCAAAATTGTTGAATTGGGCAGACGCATGGGTGG
ATCCGTTTCAATGACCCTTGTGAATGATGCGTTTCTAGAAACTGCAAGAA
GCTGGATTTGTAATGTTGACGTAGCCAAAATCAGACCTCCTGGTGTAGTA
TGGTTCACTGTGGATGATACGGCCTATAATGTGTTGAAGGATGTTAACGG
CTCGTACGCAATACGTATGAATGAATTTCGAGGAGGCCGACAGCGAGAAG
GAACATCGTACGGAACGCCAGGATATTGGTTATTGATGCTGGAACGTACT
AAACTGATTCAGAGTATCCTTGACAGTGGTATCGGGGTGTTTGCATTTGA
AACAGACCAGATCTGGCTGCGAGATCCCATTCCATTCGTTAGTCGACTGG
TACATAGCGGGGACGAGGTCGATATCGTAGGGACGCTCGACACTCGTCAT
GAAATTGGAGGTAACTTTCTCTACTTAAATCCCACGCTAGCAATGCGAAG
GACGTGGCGTGAAGTTTGTAGGCGATTCGAAAAGTCTTTCAAAGCTAGTC
GGCTTCAAGGACACTCTGCAAAGTACAGACGGTATGTGGAGAATGATCAG
TCAATCTTAACTAAGCTAGTATTCTACGATGAGGAATTCAAGAACAAGAA
CCCTACAATATTCCGTGCTTTGGACACTGACCTGTTCGTTGATGGACGGT
GGTATGACAAGAAGAAGCACTATTATACATCTTCCAAGTCGAGAAGCCCG
ATTCTGATCAACAACAACTTTCTGGTTGGAATTGAAAATAAGAAGCAACG
TGCCATCAAGAACAATCATTGGTTCCTCTCTGAGAATAAGTGCAACGTTG
AACGCGTTAAGAAGGCGATAAGAATCAATGAGGAACGCGGCGGAATACCT
TTACCCATCGACGGCGAGATCCCAGTCTCTAGAATAGAGGGAGCTGACAT
CGAAGCTGGGCTAGACGCAGCACTTGTGGCTATCGAAAAGGAGAGAGTAA
ATTCTTAG