Ggra5647.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5647.t1
Unique NameGgra5647.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1240086..1241228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703825.1
PFAMsRRM_1,Torus,zf-CCCH
Max annot lvl2759|Eukaryota
KEGG koko:K12872
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Evalue1.21e-109
EggNOG OGsKOG0153@1|root,KOG0153@2759|Eukaryota
DescriptionU6 snRNA binding
COG categoryO
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5647Ggra5647Gracilaria gracilis GNS1m malegenetig00000842_pilon 1240086..1241228 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5647.t1.stop1Ggra5647.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1240086..1240088 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5647.t1.CDS1Ggra5647.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1240086..1241228 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5647.t1.exon1Ggra5647.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1240086..1241228 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5647.t1.start1Ggra5647.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1241226..1241228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5647.t1Ggra5647.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1240086..1241228 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5647.t1 ID=Ggra5647.t1|Name=Ggra5647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MSAANTKGDDFPILCETCLGPNPYVRMQKQPWASACKVCERPFTSFRWRP
AGEATRPKKTEICQTCARAKNVCQTCLLDLEYGLPVQVRDASMAAGDRQR
TVVPKSDGTREYAAAQSERAIVSGEVQAVYDAPKINDIAQRAKRITPRYE
RNRSRICSFFLKGACTRGLYCPYRHEKPKDVEHDADEAMEEQNLRDRYYG
VNDPVASKIFRKLGVSVSARRGGAQGPSPPDDPTIQTLFIGGLNAAITES
DLKLLFAECKGLSSISMISDKGFAFAEFESRQAAEQAIDTMYGKHLVNGT
NIFINWGRGNRKRQHRQSTDATQLLPSSNHGADEQAAKQGASSRSQPEAK
RPRTSQPKKHAWDLLDVANSKLPVRDQSNT*
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spliced messenger RNA

>Ggra5647.t1 ID=Ggra5647.t1|Name=Ggra5647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000842_pilon:1240086..1241228- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTGCGAATACAAAGGGCGACGACTTCCCCATACTTTGCGAAAC
ATGCCTGGGTCCAAACCCATACGTGCGCATGCAAAAGCAGCCATGGGCTT
CCGCGTGCAAGGTGTGCGAGCGCCCATTCACCTCATTCCGCTGGCGGCCG
GCGGGAGAAGCCACTCGCCCCAAGAAGACAGAAATCTGCCAAACGTGCGC
CCGAGCAAAGAACGTGTGTCAGACCTGTTTGCTCGACCTGGAATACGGCC
TTCCCGTTCAAGTCAGAGATGCATCCATGGCAGCCGGCGATCGTCAGAGA
ACGGTTGTTCCCAAGAGCGACGGCACCAGAGAGTATGCCGCCGCACAATC
TGAACGCGCCATTGTCAGCGGAGAGGTGCAAGCTGTTTATGATGCGCCCA
AGATCAACGATATTGCGCAACGAGCAAAGCGTATCACACCGCGTTACGAA
AGAAACCGCTCCAGGATTTGTTCCTTCTTTCTGAAAGGCGCTTGCACCCG
AGGTTTGTATTGCCCTTATCGCCACGAGAAGCCAAAAGACGTTGAGCATG
ACGCTGATGAAGCCATGGAAGAGCAAAACTTGCGTGATAGATACTATGGC
GTCAATGATCCGGTCGCATCCAAGATATTCCGCAAGCTGGGAGTTTCTGT
CAGTGCGCGGAGAGGTGGTGCACAAGGACCTTCACCTCCAGATGATCCTA
CAATACAAACTCTTTTTATTGGCGGACTCAACGCCGCTATCACCGAAAGT
GATTTGAAGCTTCTGTTTGCCGAATGCAAAGGACTATCAAGCATCTCTAT
GATCAGCGATAAAGGCTTTGCGTTTGCCGAATTTGAATCTCGACAAGCGG
CAGAGCAAGCTATTGATACAATGTATGGAAAGCATCTGGTGAACGGAACC
AATATCTTCATCAATTGGGGGAGAGGAAACCGAAAACGCCAACATCGCCA
GAGTACAGATGCCACGCAATTGTTGCCATCGTCAAATCATGGCGCCGATG
AACAAGCTGCGAAACAGGGTGCGTCATCGAGATCCCAACCGGAGGCCAAA
AGACCAAGGACTTCACAACCCAAAAAGCATGCATGGGATCTCTTGGATGT
GGCAAACTCCAAACTGCCAGTGCGCGACCAGTCGAACACATGA
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protein sequence of Ggra5647.t1

>Ggra5647.t1 ID=Ggra5647.t1|Name=Ggra5647.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MSAANTKGDDFPILCETCLGPNPYVRMQKQPWASACKVCERPFTSFRWRP
AGEATRPKKTEICQTCARAKNVCQTCLLDLEYGLPVQVRDASMAAGDRQR
TVVPKSDGTREYAAAQSERAIVSGEVQAVYDAPKINDIAQRAKRITPRYE
RNRSRICSFFLKGACTRGLYCPYRHEKPKDVEHDADEAMEEQNLRDRYYG
VNDPVASKIFRKLGVSVSARRGGAQGPSPPDDPTIQTLFIGGLNAAITES
DLKLLFAECKGLSSISMISDKGFAFAEFESRQAAEQAIDTMYGKHLVNGT
NIFINWGRGNRKRQHRQSTDATQLLPSSNHGADEQAAKQGASSRSQPEAK
RPRTSQPKKHAWDLLDVANSKLPVRDQSNT*
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mRNA from alignment at tig00000842_pilon:1240086..1241228-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5647.t1 ID=Ggra5647.t1|Name=Ggra5647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000842_pilon:1240086..1241228- (Gracilaria gracilis GNS1m male)
ATGTCTGCTGCGAATACAAAGGGCGACGACTTCCCCATACTTTGCGAAAC
ATGCCTGGGTCCAAACCCATACGTGCGCATGCAAAAGCAGCCATGGGCTT
CCGCGTGCAAGGTGTGCGAGCGCCCATTCACCTCATTCCGCTGGCGGCCG
GCGGGAGAAGCCACTCGCCCCAAGAAGACAGAAATCTGCCAAACGTGCGC
CCGAGCAAAGAACGTGTGTCAGACCTGTTTGCTCGACCTGGAATACGGCC
TTCCCGTTCAAGTCAGAGATGCATCCATGGCAGCCGGCGATCGTCAGAGA
ACGGTTGTTCCCAAGAGCGACGGCACCAGAGAGTATGCCGCCGCACAATC
TGAACGCGCCATTGTCAGCGGAGAGGTGCAAGCTGTTTATGATGCGCCCA
AGATCAACGATATTGCGCAACGAGCAAAGCGTATCACACCGCGTTACGAA
AGAAACCGCTCCAGGATTTGTTCCTTCTTTCTGAAAGGCGCTTGCACCCG
AGGTTTGTATTGCCCTTATCGCCACGAGAAGCCAAAAGACGTTGAGCATG
ACGCTGATGAAGCCATGGAAGAGCAAAACTTGCGTGATAGATACTATGGC
GTCAATGATCCGGTCGCATCCAAGATATTCCGCAAGCTGGGAGTTTCTGT
CAGTGCGCGGAGAGGTGGTGCACAAGGACCTTCACCTCCAGATGATCCTA
CAATACAAACTCTTTTTATTGGCGGACTCAACGCCGCTATCACCGAAAGT
GATTTGAAGCTTCTGTTTGCCGAATGCAAAGGACTATCAAGCATCTCTAT
GATCAGCGATAAAGGCTTTGCGTTTGCCGAATTTGAATCTCGACAAGCGG
CAGAGCAAGCTATTGATACAATGTATGGAAAGCATCTGGTGAACGGAACC
AATATCTTCATCAATTGGGGGAGAGGAAACCGAAAACGCCAACATCGCCA
GAGTACAGATGCCACGCAATTGTTGCCATCGTCAAATCATGGCGCCGATG
AACAAGCTGCGAAACAGGGTGCGTCATCGAGATCCCAACCGGAGGCCAAA
AGACCAAGGACTTCACAACCCAAAAAGCATGCATGGGATCTCTTGGATGT
GGCAAACTCCAAACTGCCAGTGCGCGACCAGTCGAACACATGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1240086..1241228-

>Ggra5647.t1 ID=Ggra5647.t1|Name=Ggra5647.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000842_pilon:1240086..1241228- (Gracilaria gracilis GNS1m male)
ATGTCTGCTGCGAATACAAAGGGCGACGACTTCCCCATACTTTGCGAAAC
ATGCCTGGGTCCAAACCCATACGTGCGCATGCAAAAGCAGCCATGGGCTT
CCGCGTGCAAGGTGTGCGAGCGCCCATTCACCTCATTCCGCTGGCGGCCG
GCGGGAGAAGCCACTCGCCCCAAGAAGACAGAAATCTGCCAAACGTGCGC
CCGAGCAAAGAACGTGTGTCAGACCTGTTTGCTCGACCTGGAATACGGCC
TTCCCGTTCAAGTCAGAGATGCATCCATGGCAGCCGGCGATCGTCAGAGA
ACGGTTGTTCCCAAGAGCGACGGCACCAGAGAGTATGCCGCCGCACAATC
TGAACGCGCCATTGTCAGCGGAGAGGTGCAAGCTGTTTATGATGCGCCCA
AGATCAACGATATTGCGCAACGAGCAAAGCGTATCACACCGCGTTACGAA
AGAAACCGCTCCAGGATTTGTTCCTTCTTTCTGAAAGGCGCTTGCACCCG
AGGTTTGTATTGCCCTTATCGCCACGAGAAGCCAAAAGACGTTGAGCATG
ACGCTGATGAAGCCATGGAAGAGCAAAACTTGCGTGATAGATACTATGGC
GTCAATGATCCGGTCGCATCCAAGATATTCCGCAAGCTGGGAGTTTCTGT
CAGTGCGCGGAGAGGTGGTGCACAAGGACCTTCACCTCCAGATGATCCTA
CAATACAAACTCTTTTTATTGGCGGACTCAACGCCGCTATCACCGAAAGT
GATTTGAAGCTTCTGTTTGCCGAATGCAAAGGACTATCAAGCATCTCTAT
GATCAGCGATAAAGGCTTTGCGTTTGCCGAATTTGAATCTCGACAAGCGG
CAGAGCAAGCTATTGATACAATGTATGGAAAGCATCTGGTGAACGGAACC
AATATCTTCATCAATTGGGGGAGAGGAAACCGAAAACGCCAACATCGCCA
GAGTACAGATGCCACGCAATTGTTGCCATCGTCAAATCATGGCGCCGATG
AACAAGCTGCGAAACAGGGTGCGTCATCGAGATCCCAACCGGAGGCCAAA
AGACCAAGGACTTCACAACCCAAAAAGCATGCATGGGATCTCTTGGATGT
GGCAAACTCCAAACTGCCAGTGCGCGACCAGTCGAACACATGA
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