Ggra5618.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5618.t1
Unique NameGgra5618.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1171222..1171977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5618Ggra5618Gracilaria gracilis GNS1m malegenetig00000842_pilon 1171222..1171977 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5618.t1.stop1Ggra5618.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1171222..1171224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5618.t1.CDS1Ggra5618.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1171222..1171977 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5618.t1.exon1Ggra5618.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1171222..1171977 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5618.t1.start1Ggra5618.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1171975..1171977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5618.t1Ggra5618.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1171222..1171977 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5618.t1 ID=Ggra5618.t1|Name=Ggra5618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MDMFSRLPVLRLKRKHDGNNVDALHVRVNPKRRRTGGETQQFDPSDCPQQ
AHYVNVFFRRVQQLDEAEQLLERTDTRVIDVPSHVIQQGEEQLPTQVLCN
GTPMQRVEVASSLHQNKESERVCCHPAVQPNDSTHLYDIFTLETDGTVYD
QNSQIALACINADDISLFDDQDDDQSLPYTSDEDAKTVDYPSTPQHSLDD
SLSHASSLGDTDVYNSHGSHCDVSCACGMGFRDVPSFAYDPYYDDSCDDY
Q*
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spliced messenger RNA

>Ggra5618.t1 ID=Ggra5618.t1|Name=Ggra5618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000842_pilon:1171222..1171977- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATGTTCTCACGTCTGCCGGTTCTGCGCCTCAAACGGAAACATGA
TGGTAACAATGTTGATGCGCTACATGTACGGGTTAACCCGAAGAGAAGAA
GGACGGGTGGGGAGACTCAGCAGTTTGATCCCTCTGACTGTCCTCAACAA
GCGCATTACGTCAATGTGTTCTTTCGCCGTGTGCAGCAGCTTGACGAAGC
TGAACAACTACTTGAACGCACTGATACTCGCGTGATTGATGTCCCTTCTC
ATGTTATTCAGCAAGGGGAAGAACAGCTTCCAACTCAGGTTTTATGTAAC
GGTACTCCTATGCAACGTGTTGAAGTCGCATCTTCTCTGCACCAGAATAA
GGAGTCTGAGCGCGTTTGCTGTCATCCTGCTGTTCAACCTAATGACAGTA
CACATCTCTATGATATCTTTACCTTAGAGACCGATGGCACCGTATATGAT
CAAAACTCGCAAATTGCACTTGCTTGTATAAACGCTGATGATATTTCCTT
GTTTGATGATCAGGACGATGACCAGAGTTTGCCGTATACGTCCGACGAGG
ACGCCAAGACTGTTGACTACCCGAGTACCCCGCAGCACTCTTTAGATGAT
TCCCTCTCGCATGCCTCGTCTCTTGGGGACACTGATGTGTACAATTCGCA
TGGTTCTCATTGCGACGTCAGCTGTGCATGCGGAATGGGATTTCGAGACG
TTCCATCGTTTGCTTACGACCCATACTACGATGATAGCTGTGATGATTAT
CAATAA
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protein sequence of Ggra5618.t1

>Ggra5618.t1 ID=Ggra5618.t1|Name=Ggra5618.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MDMFSRLPVLRLKRKHDGNNVDALHVRVNPKRRRTGGETQQFDPSDCPQQ
AHYVNVFFRRVQQLDEAEQLLERTDTRVIDVPSHVIQQGEEQLPTQVLCN
GTPMQRVEVASSLHQNKESERVCCHPAVQPNDSTHLYDIFTLETDGTVYD
QNSQIALACINADDISLFDDQDDDQSLPYTSDEDAKTVDYPSTPQHSLDD
SLSHASSLGDTDVYNSHGSHCDVSCACGMGFRDVPSFAYDPYYDDSCDDY
Q*
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mRNA from alignment at tig00000842_pilon:1171222..1171977-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5618.t1 ID=Ggra5618.t1|Name=Ggra5618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000842_pilon:1171222..1171977- (Gracilaria gracilis GNS1m male)
ATGGATATGTTCTCACGTCTGCCGGTTCTGCGCCTCAAACGGAAACATGA
TGGTAACAATGTTGATGCGCTACATGTACGGGTTAACCCGAAGAGAAGAA
GGACGGGTGGGGAGACTCAGCAGTTTGATCCCTCTGACTGTCCTCAACAA
GCGCATTACGTCAATGTGTTCTTTCGCCGTGTGCAGCAGCTTGACGAAGC
TGAACAACTACTTGAACGCACTGATACTCGCGTGATTGATGTCCCTTCTC
ATGTTATTCAGCAAGGGGAAGAACAGCTTCCAACTCAGGTTTTATGTAAC
GGTACTCCTATGCAACGTGTTGAAGTCGCATCTTCTCTGCACCAGAATAA
GGAGTCTGAGCGCGTTTGCTGTCATCCTGCTGTTCAACCTAATGACAGTA
CACATCTCTATGATATCTTTACCTTAGAGACCGATGGCACCGTATATGAT
CAAAACTCGCAAATTGCACTTGCTTGTATAAACGCTGATGATATTTCCTT
GTTTGATGATCAGGACGATGACCAGAGTTTGCCGTATACGTCCGACGAGG
ACGCCAAGACTGTTGACTACCCGAGTACCCCGCAGCACTCTTTAGATGAT
TCCCTCTCGCATGCCTCGTCTCTTGGGGACACTGATGTGTACAATTCGCA
TGGTTCTCATTGCGACGTCAGCTGTGCATGCGGAATGGGATTTCGAGACG
TTCCATCGTTTGCTTACGACCCATACTACGATGATAGCTGTGATGATTAT
CAATAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1171222..1171977-

>Ggra5618.t1 ID=Ggra5618.t1|Name=Ggra5618.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000842_pilon:1171222..1171977- (Gracilaria gracilis GNS1m male)
ATGGATATGTTCTCACGTCTGCCGGTTCTGCGCCTCAAACGGAAACATGA
TGGTAACAATGTTGATGCGCTACATGTACGGGTTAACCCGAAGAGAAGAA
GGACGGGTGGGGAGACTCAGCAGTTTGATCCCTCTGACTGTCCTCAACAA
GCGCATTACGTCAATGTGTTCTTTCGCCGTGTGCAGCAGCTTGACGAAGC
TGAACAACTACTTGAACGCACTGATACTCGCGTGATTGATGTCCCTTCTC
ATGTTATTCAGCAAGGGGAAGAACAGCTTCCAACTCAGGTTTTATGTAAC
GGTACTCCTATGCAACGTGTTGAAGTCGCATCTTCTCTGCACCAGAATAA
GGAGTCTGAGCGCGTTTGCTGTCATCCTGCTGTTCAACCTAATGACAGTA
CACATCTCTATGATATCTTTACCTTAGAGACCGATGGCACCGTATATGAT
CAAAACTCGCAAATTGCACTTGCTTGTATAAACGCTGATGATATTTCCTT
GTTTGATGATCAGGACGATGACCAGAGTTTGCCGTATACGTCCGACGAGG
ACGCCAAGACTGTTGACTACCCGAGTACCCCGCAGCACTCTTTAGATGAT
TCCCTCTCGCATGCCTCGTCTCTTGGGGACACTGATGTGTACAATTCGCA
TGGTTCTCATTGCGACGTCAGCTGTGCATGCGGAATGGGATTTCGAGACG
TTCCATCGTTTGCTTACGACCCATACTACGATGATAGCTGTGATGATTAT
CAATAA
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