Ggra5616.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5616.t1
Unique NameGgra5616.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1166299..1168960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709042.1
Preferred nameDDO
PFAMsDAO
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00018,RC00135
KEGG koko:K00272,ko:K00273,ko:K16582
KEGG ReactionR00359,R00366,R02457,R02894,R02923,R04221,R07400
KEGG Pathwayko00250,ko00260,ko00311,ko00330,ko00472,ko01100,ko01130,ko04146,map00250,map00260,map00311,map00330,map00472,map01100,map01130,map04146
GOsGO:0000003,GO:0000166,GO:0003674,GO:0003824,GO:0003884,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006531,GO:0006533,GO:0006551,GO:0006560,GO:0006562,GO:0006584,GO:0006605,GO:0006625,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007320,GO:0007610,GO:0007618,GO:0007620,GO:0007625,GO:0008104,GO:0008150,GO:0008152,GO:0008445,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009066,GO:0009068,GO:0009069,GO:0009071,GO:0009078,GO:0009080,GO:0009081,GO:0009712,GO:0009713,GO:0009987,GO:0010817,GO:0015031,GO:0015833,GO:0015922,GO:0016020,GO:0016043,GO:0016054,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018958,GO:0019438,GO:0019478,GO:0019752,GO:0019953,GO:0022414,GO:0031090,GO:0031903,GO:0031907,GO:0031974,GO:0032501,GO:0032504,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0036088,GO:0036094,GO:0042416,GO:0042417,GO:0042423,GO:0042445,GO:0042579,GO:0042737,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045184,GO:0046144,GO:0046189,GO:0046395,GO:0046416,GO:0046436,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0047821,GO:0048037,GO:0048609,GO:0050660,GO:0050662,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055114,GO:0055130,GO:0065007,GO:0065008,GO:0070013,GO:0070178,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071949,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097164,GO:0098588,GO:0098805,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901615,GO:1901617
Evalue1.5e-31
EggNOG OGsCOG0665@1|root,KOG3923@2759|Eukaryota
EC1.4.3.1,1.4.3.3
DescriptionD-amino-acid oxidase activity
COG categoryE
BRITEko00000,ko00001,ko01000,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5616Ggra5616Gracilaria gracilis GNS1m malegenetig00000842_pilon 1166299..1168960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5616.t1Ggra5616.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1166299..1168960 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5616.t1.start1Ggra5616.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1166299..1166301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5616.t1.CDS1Ggra5616.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1166299..1167183 +
Ggra5616.t1.CDS2Ggra5616.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1168262..1168960 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5616.t1.exon1Ggra5616.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1166299..1167183 +
Ggra5616.t1.exon2Ggra5616.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1168262..1168960 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5616.t1.intron1Ggra5616.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1167184..1168261 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5616.t1.stop1Ggra5616.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1168958..1168960 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5616.t1 ID=Ggra5616.t1|Name=Ggra5616.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp
MFDRGHTPWDSNPRGTYTSSGSGGFWMPIFLEGEEIEQWATTTYRTLHSH
IEENAGVTAMDALYLYARGEPVIPWYADMTDMKVVSPQEDKRVPADYKWA
LKFKTVVVQMNVYLMYLESCLTELDVPIHTTREFSKPSQSSLWDMGRVSQ
FARTMAHDTIIVNCAGIGARFLADEDVIPGRGIILRVKRPPELNYVITED
PHDAIQSRNGLLAYAIPRGDELSLGGTLFKGDWDEEASDEEVNAVRSRAE
QLLPIKGMAETARWSGLRPLRLDGKAKVKKESPNVISNYGHGGSGAPPEV
VPQRTSERRRELDHTTTPTKPARYRVRQVELSEVYTVADIRCEAFYEHPK
DPYFYPVRRREIYMAMRDRLDSGNKCLVVVDTQPPLEWSQYATDGELIVG
SLDISLHEPRTGRKCQFLKSIFDRSGASNAHTEDEDPKRIYISSMAIREG
WRGRGLAQLLLVNVDNLALRQGSKEVFLHVELDNQPAVHVYTKCGFHVVP
DDALICLPKWLHFITKVEHTLMQKILD*
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spliced messenger RNA

>Ggra5616.t1 ID=Ggra5616.t1|Name=Ggra5616.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00000842_pilon:1166299..1168960+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGATCGGGGTCACACGCCATGGGACTCAAATCCCAGGGGGACGTA
CACGAGCTCAGGATCTGGAGGTTTTTGGATGCCGATATTCCTGGAAGGAG
AGGAAATAGAACAATGGGCAACTACGACATACAGAACATTACATTCGCAC
ATTGAAGAGAATGCAGGTGTCACTGCTATGGATGCGTTATATTTATATGC
CAGAGGTGAGCCAGTCATTCCTTGGTATGCAGATATGACAGACATGAAAG
TGGTTAGCCCGCAGGAAGACAAGAGAGTTCCTGCAGATTACAAATGGGCT
CTGAAGTTCAAAACGGTGGTGGTACAAATGAACGTATACTTGATGTACTT
AGAATCATGCCTGACAGAGCTCGATGTACCGATACACACGACGCGGGAGT
TCAGCAAACCCTCACAGTCTTCGCTGTGGGATATGGGACGCGTTTCTCAG
TTTGCAAGAACGATGGCACACGACACAATTATTGTGAACTGTGCCGGAAT
CGGTGCAAGATTCCTGGCAGATGAAGACGTGATACCAGGGCGTGGTATAA
TACTTCGAGTGAAGCGACCACCCGAATTGAACTACGTGATCACAGAAGAC
CCTCATGACGCAATTCAATCACGCAATGGTTTACTAGCATACGCGATTCC
GCGCGGCGATGAGCTTTCTCTAGGAGGTACATTGTTTAAGGGTGATTGGG
ATGAGGAAGCTTCTGATGAGGAGGTGAATGCGGTGAGAAGTAGAGCAGAG
CAGTTGCTGCCTATTAAGGGAATGGCTGAGACGGCACGATGGAGTGGACT
GCGACCGCTTCGATTGGATGGGAAGGCAAAAGTTAAGAAGGAGTCGCCTA
ATGTGATTTCAAATTACGGGCATGGAGGAAGCGGGGCGCCACCAGAGGTT
GTTCCGCAACGAACTTCCGAGCGTCGAAGGGAGCTTGACCACACTACAAC
GCCCACAAAGCCGGCTCGTTATCGCGTGCGTCAGGTCGAACTGAGTGAGG
TGTACACAGTCGCCGATATTCGGTGTGAGGCTTTCTATGAACATCCGAAG
GACCCATATTTCTATCCAGTGCGCCGCCGCGAAATCTATATGGCCATGCG
TGACCGCCTTGACTCTGGCAATAAATGCCTGGTTGTCGTCGACACACAGC
CGCCATTGGAGTGGTCGCAGTACGCCACTGATGGTGAACTTATTGTCGGT
TCACTGGACATCTCTTTGCATGAACCCAGGACGGGCCGAAAGTGCCAGTT
TTTGAAAAGCATTTTTGACAGATCTGGAGCTAGCAACGCTCACACCGAAG
ACGAAGATCCAAAACGGATATATATCAGCTCAATGGCAATCAGGGAAGGC
TGGAGAGGGAGAGGCCTCGCACAATTGTTGTTGGTGAATGTTGATAATCT
TGCTTTGCGACAAGGCAGCAAGGAAGTGTTCTTGCATGTAGAGTTGGACA
ACCAACCTGCTGTTCATGTGTATACCAAATGCGGCTTTCATGTAGTTCCA
GATGACGCACTGATTTGTTTACCGAAATGGTTGCACTTCATAACCAAGGT
CGAGCATACCCTTATGCAGAAGATATTGGATTGA
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protein sequence of Ggra5616.t1

>Ggra5616.t1 ID=Ggra5616.t1|Name=Ggra5616.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=528bp
MFDRGHTPWDSNPRGTYTSSGSGGFWMPIFLEGEEIEQWATTTYRTLHSH
IEENAGVTAMDALYLYARGEPVIPWYADMTDMKVVSPQEDKRVPADYKWA
LKFKTVVVQMNVYLMYLESCLTELDVPIHTTREFSKPSQSSLWDMGRVSQ
FARTMAHDTIIVNCAGIGARFLADEDVIPGRGIILRVKRPPELNYVITED
PHDAIQSRNGLLAYAIPRGDELSLGGTLFKGDWDEEASDEEVNAVRSRAE
QLLPIKGMAETARWSGLRPLRLDGKAKVKKESPNVISNYGHGGSGAPPEV
VPQRTSERRRELDHTTTPTKPARYRVRQVELSEVYTVADIRCEAFYEHPK
DPYFYPVRRREIYMAMRDRLDSGNKCLVVVDTQPPLEWSQYATDGELIVG
SLDISLHEPRTGRKCQFLKSIFDRSGASNAHTEDEDPKRIYISSMAIREG
WRGRGLAQLLLVNVDNLALRQGSKEVFLHVELDNQPAVHVYTKCGFHVVP
DDALICLPKWLHFITKVEHTLMQKILD*
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mRNA from alignment at tig00000842_pilon:1166299..1168960+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5616.t1 ID=Ggra5616.t1|Name=Ggra5616.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2662bp|location=Sequence derived from alignment at tig00000842_pilon:1166299..1168960+ (Gracilaria gracilis GNS1m male)
ATGTTTGATCGGGGTCACACGCCATGGGACTCAAATCCCAGGGGGACGTA
CACGAGCTCAGGATCTGGAGGTTTTTGGATGCCGATATTCCTGGAAGGAG
AGGAAATAGAACAATGGGCAACTACGACATACAGAACATTACATTCGCAC
ATTGAAGAGAATGCAGGTGTCACTGCTATGGATGCGTTATATTTATATGC
CAGAGGTGAGCCAGTCATTCCTTGGTATGCAGATATGACAGACATGAAAG
TGGTTAGCCCGCAGGAAGACAAGAGAGTTCCTGCAGATTACAAATGGGCT
CTGAAGTTCAAAACGGTGGTGGTACAAATGAACGTATACTTGATGTACTT
AGAATCATGCCTGACAGAGCTCGATGTACCGATACACACGACGCGGGAGT
TCAGCAAACCCTCACAGTCTTCGCTGTGGGATATGGGACGCGTTTCTCAG
TTTGCAAGAACGATGGCACACGACACAATTATTGTGAACTGTGCCGGAAT
CGGTGCAAGATTCCTGGCAGATGAAGACGTGATACCAGGGCGTGGTATAA
TACTTCGAGTGAAGCGACCACCCGAATTGAACTACGTGATCACAGAAGAC
CCTCATGACGCAATTCAATCACGCAATGGTTTACTAGCATACGCGATTCC
GCGCGGCGATGAGCTTTCTCTAGGAGGTACATTGTTTAAGGGTGATTGGG
ATGAGGAAGCTTCTGATGAGGAGGTGAATGCGGTGAGAAGTAGAGCAGAG
CAGTTGCTGCCTATTAAGGGAATGGCTGAGACGGCACGATGGAGTGGACT
GCGACCGCTTCGATTGGATGGGAAGGCAAAAGTTAAGAAGGAGTCGCCTA
ATGTGATTTCAAATTACGGGCATGGAGGAAGCGGGGTGACTATCTGTTGG
GGTTGCGCAGAAAGTGTAGTGAAGCTGGTTGCGGGAGGCGATTGAGAGAA
GTTGATTCGATTGGAGAAAGGTGGATGAGCTTGCTCGTCGCCGATTATTG
GAATTGGGACCATCGTTCACGCTCTATCTCTAGCGTTGATGGTTTGTCCG
AGCTGCCCTGATTGCTTTGAATGTTGTAGTGCTTGGGACTATGATACGAA
CAACACCGCAGCGGTGGGAGGGCGGAGGGCGTGGAGATATGTTTACTGTA
AAGCCATGACCTTGACAGTGTTCATTGGACTGCGAAATCGGCTTGGCACG
GAAGAGAAAGCTGCAAATATCATAACCTCTATCTCAAGAGCCATATCCGT
GGGTTTCCGAAACGGGCGGTTCCAGGATGCGGAATCAGCGAAAAAGAGAG
CTGCACGAAAAACGACACCGGATCAAAGCGCTGCGACAGCCGGCACCGCG
CCAGCAATGCGAGCGCCACTTACTGCCGCCAAATGATTGGCGCATGCGGC
TGTCAGCAAGGAGATATAGCAATCTCATCGCCGTGTGCTTACAGAGGGCA
GGAAGAAAGCGGTCCGCACGACGCGCGAGCTGGGCACGTCGAAGCGCCGC
TCTTGTGGAGCAATACCATTCGCAGATGCTACTTTTGCATAACCACCTCA
GACGCGCCCCATTCCTCCGCCGCTCTCGTTCGTTTGTATTATACGTCGGA
CGCTCCACGTCCATTGTTCGCCCTTCAAGTGCGTCGTCCCGTCCAGCTGC
ACTGTTTTGCGCCGCGCCAACTTCTCTGCGGCATCTCCCCGTGTGCTATC
GTGCGACAAACACTGCCGACCACGCCATGAAGCACGCAATCACCCTCGGC
GCGACGACGCCCGTTTCGCTCGCCTTCGCTGTTCCACACAGTCACTTGTT
TTTGACCCATTCCCAACCAACAGCCTTTCATGCCCACCGTGTCAATCGGC
GCGTCTCCAATGCACGATGGAGCCTGCAACCAAACAGAAGCTGCAACCGA
GCGCTTGTCATACGCGCCCAACGTTCAGTGTTACCAAAGGCTTCGCCAAT
AACAGCGGTCCAGGCGCCACCAGAGGTTGTTCCGCAACGAACTTCCGAGC
GTCGAAGGGAGCTTGACCACACTACAACGCCCACAAAGCCGGCTCGTTAT
CGCGTGCGTCAGGTCGAACTGAGTGAGGTGTACACAGTCGCCGATATTCG
GTGTGAGGCTTTCTATGAACATCCGAAGGACCCATATTTCTATCCAGTGC
GCCGCCGCGAAATCTATATGGCCATGCGTGACCGCCTTGACTCTGGCAAT
AAATGCCTGGTTGTCGTCGACACACAGCCGCCATTGGAGTGGTCGCAGTA
CGCCACTGATGGTGAACTTATTGTCGGTTCACTGGACATCTCTTTGCATG
AACCCAGGACGGGCCGAAAGTGCCAGTTTTTGAAAAGCATTTTTGACAGA
TCTGGAGCTAGCAACGCTCACACCGAAGACGAAGATCCAAAACGGATATA
TATCAGCTCAATGGCAATCAGGGAAGGCTGGAGAGGGAGAGGCCTCGCAC
AATTGTTGTTGGTGAATGTTGATAATCTTGCTTTGCGACAAGGCAGCAAG
GAAGTGTTCTTGCATGTAGAGTTGGACAACCAACCTGCTGTTCATGTGTA
TACCAAATGCGGCTTTCATGTAGTTCCAGATGACGCACTGATTTGTTTAC
CGAAATGGTTGCACTTCATAACCAAGGTCGAGCATACCCTTATGCAGAAG
ATATTGGATTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1166299..1168960+

>Ggra5616.t1 ID=Ggra5616.t1|Name=Ggra5616.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1584bp|location=Sequence derived from alignment at tig00000842_pilon:1166299..1168960+ (Gracilaria gracilis GNS1m male)
ATGTTTGATCGGGGTCACACGCCATGGGACTCAAATCCCAGGGGGACGTA
CACGAGCTCAGGATCTGGAGGTTTTTGGATGCCGATATTCCTGGAAGGAG
AGGAAATAGAACAATGGGCAACTACGACATACAGAACATTACATTCGCAC
ATTGAAGAGAATGCAGGTGTCACTGCTATGGATGCGTTATATTTATATGC
CAGAGGTGAGCCAGTCATTCCTTGGTATGCAGATATGACAGACATGAAAG
TGGTTAGCCCGCAGGAAGACAAGAGAGTTCCTGCAGATTACAAATGGGCT
CTGAAGTTCAAAACGGTGGTGGTACAAATGAACGTATACTTGATGTACTT
AGAATCATGCCTGACAGAGCTCGATGTACCGATACACACGACGCGGGAGT
TCAGCAAACCCTCACAGTCTTCGCTGTGGGATATGGGACGCGTTTCTCAG
TTTGCAAGAACGATGGCACACGACACAATTATTGTGAACTGTGCCGGAAT
CGGTGCAAGATTCCTGGCAGATGAAGACGTGATACCAGGGCGTGGTATAA
TACTTCGAGTGAAGCGACCACCCGAATTGAACTACGTGATCACAGAAGAC
CCTCATGACGCAATTCAATCACGCAATGGTTTACTAGCATACGCGATTCC
GCGCGGCGATGAGCTTTCTCTAGGAGGTACATTGTTTAAGGGTGATTGGG
ATGAGGAAGCTTCTGATGAGGAGGTGAATGCGGTGAGAAGTAGAGCAGAG
CAGTTGCTGCCTATTAAGGGAATGGCTGAGACGGCACGATGGAGTGGACT
GCGACCGCTTCGATTGGATGGGAAGGCAAAAGTTAAGAAGGAGTCGCCTA
ATGTGATTTCAAATTACGGGCATGGAGGAAGCGGGGCGCCACCAGAGGTT
GTTCCGCAACGAACTTCCGAGCGTCGAAGGGAGCTTGACCACACTACAAC
GCCCACAAAGCCGGCTCGTTATCGCGTGCGTCAGGTCGAACTGAGTGAGG
TGTACACAGTCGCCGATATTCGGTGTGAGGCTTTCTATGAACATCCGAAG
GACCCATATTTCTATCCAGTGCGCCGCCGCGAAATCTATATGGCCATGCG
TGACCGCCTTGACTCTGGCAATAAATGCCTGGTTGTCGTCGACACACAGC
CGCCATTGGAGTGGTCGCAGTACGCCACTGATGGTGAACTTATTGTCGGT
TCACTGGACATCTCTTTGCATGAACCCAGGACGGGCCGAAAGTGCCAGTT
TTTGAAAAGCATTTTTGACAGATCTGGAGCTAGCAACGCTCACACCGAAG
ACGAAGATCCAAAACGGATATATATCAGCTCAATGGCAATCAGGGAAGGC
TGGAGAGGGAGAGGCCTCGCACAATTGTTGTTGGTGAATGTTGATAATCT
TGCTTTGCGACAAGGCAGCAAGGAAGTGTTCTTGCATGTAGAGTTGGACA
ACCAACCTGCTGTTCATGTGTATACCAAATGCGGCTTTCATGTAGTTCCA
GATGACGCACTGATTTGTTTACCGAAATGGTTGCACTTCATAACCAAGGT
CGAGCATACCCTTATGCAGAAGATATTGGATTGA
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