Ggra5611.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5611.t1
Unique NameGgra5611.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1126807..1128066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue1.47e-83
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5611Ggra5611Gracilaria gracilis GNS1m malegenetig00000842_pilon 1126807..1128066 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5611.t1.stop1Ggra5611.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1126807..1126809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5611.t1.CDS1Ggra5611.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1126807..1128066 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5611.t1.exon1Ggra5611.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1126807..1128066 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5611.t1.start1Ggra5611.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1128064..1128066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5611.t1Ggra5611.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1126807..1128066 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5611.t1 ID=Ggra5611.t1|Name=Ggra5611.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp
MNPEIPGEGPAPNLRYGNNVKAGYLQKKGNVFTHNPLFTIHKKHRYLEID
GSTLRCFRKKDQSHQNQLEWELGLQNANIAGNRERLEISIRAWDFHEEFA
PETTEEYDEWFTALKDASEKSIKDFYAFTRVLGEGHFGKVLLARDRHTRE
KFAVKVISKDNREIRSQTLIQRELAILKLVNHTNIVRLYDLFDTPEKLYF
VLEYMPGGALYEVLQSKSINFSEHRASLIVKDILHGLTYLHSKGIVHRDV
KPENILTSAKEWPFVSKLSDFGLSNFLGTGALESKVGTPYFCAREVVTNE
TYGTKADLWSLGVVTYEMLSGRKPFEGKHTKSVLYAILDGRYSFPEEIWQ
YISTEARDFVAKLICIDVNKRMSAEEALNHPWITNQGTPTPLDPTIPRPT
PSRQFEADLESPEPMEADA*
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spliced messenger RNA

>Ggra5611.t1 ID=Ggra5611.t1|Name=Ggra5611.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000842_pilon:1126807..1128066- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCCGAGATTCCTGGAGAAGGCCCTGCCCCAAACTTGCGCTATGG
AAACAATGTGAAGGCTGGGTATCTACAGAAGAAAGGGAACGTCTTCACGC
ACAATCCTCTGTTTACAATACACAAGAAACACCGATATTTGGAAATTGAT
GGCTCTACGCTAAGATGTTTTCGAAAGAAAGACCAGTCCCACCAGAATCA
ATTGGAGTGGGAGCTTGGGTTGCAGAATGCCAATATTGCTGGGAACAGAG
AACGCTTGGAGATATCTATTCGCGCATGGGATTTTCATGAAGAATTCGCG
CCTGAAACGACGGAAGAATATGATGAGTGGTTTACGGCGTTGAAGGATGC
AAGCGAGAAGAGCATAAAAGACTTTTACGCGTTTACAAGGGTGTTGGGAG
AAGGCCACTTTGGCAAAGTGCTTCTGGCGAGAGACCGTCACACTCGAGAA
AAGTTTGCTGTCAAAGTGATTTCAAAAGACAATCGAGAGATTCGCAGTCA
GACTCTCATTCAGAGAGAACTCGCAATTTTGAAGCTTGTGAACCACACTA
ACATTGTTCGGCTTTATGATCTTTTCGACACACCGGAAAAGTTGTACTTT
GTTCTCGAGTATATGCCAGGCGGTGCCCTCTACGAAGTCCTTCAGTCGAA
GAGTATCAACTTCTCGGAACACCGGGCTTCACTAATTGTGAAGGACATTT
TGCATGGCCTTACATATCTCCACTCAAAAGGTATTGTACATCGTGATGTC
AAGCCTGAAAACATTCTCACGTCCGCTAAGGAGTGGCCTTTCGTATCAAA
GCTTTCTGATTTTGGACTCAGTAACTTCCTAGGAACAGGAGCTTTGGAAT
CGAAGGTTGGTACACCATATTTCTGCGCTCGTGAAGTCGTCACGAATGAA
ACGTACGGCACTAAGGCTGACCTGTGGTCACTGGGTGTCGTTACCTACGA
AATGCTGTCCGGTCGCAAGCCTTTTGAAGGAAAACACACGAAGTCAGTTT
TATATGCAATTCTGGATGGGCGCTACAGTTTTCCGGAAGAGATCTGGCAA
TATATAAGCACGGAAGCTCGGGACTTCGTCGCTAAACTTATTTGCATTGA
TGTCAACAAGCGAATGTCTGCTGAGGAGGCTCTTAATCACCCATGGATTA
CTAATCAAGGTACACCGACTCCATTGGATCCCACTATCCCACGCCCAACC
CCAAGCCGTCAGTTTGAAGCCGACTTGGAAAGCCCAGAACCAATGGAAGC
AGATGCATAA
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protein sequence of Ggra5611.t1

>Ggra5611.t1 ID=Ggra5611.t1|Name=Ggra5611.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MNPEIPGEGPAPNLRYGNNVKAGYLQKKGNVFTHNPLFTIHKKHRYLEID
GSTLRCFRKKDQSHQNQLEWELGLQNANIAGNRERLEISIRAWDFHEEFA
PETTEEYDEWFTALKDASEKSIKDFYAFTRVLGEGHFGKVLLARDRHTRE
KFAVKVISKDNREIRSQTLIQRELAILKLVNHTNIVRLYDLFDTPEKLYF
VLEYMPGGALYEVLQSKSINFSEHRASLIVKDILHGLTYLHSKGIVHRDV
KPENILTSAKEWPFVSKLSDFGLSNFLGTGALESKVGTPYFCAREVVTNE
TYGTKADLWSLGVVTYEMLSGRKPFEGKHTKSVLYAILDGRYSFPEEIWQ
YISTEARDFVAKLICIDVNKRMSAEEALNHPWITNQGTPTPLDPTIPRPT
PSRQFEADLESPEPMEADA*
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mRNA from alignment at tig00000842_pilon:1126807..1128066-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5611.t1 ID=Ggra5611.t1|Name=Ggra5611.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000842_pilon:1126807..1128066- (Gracilaria gracilis GNS1m male)
ATGAACCCCGAGATTCCTGGAGAAGGCCCTGCCCCAAACTTGCGCTATGG
AAACAATGTGAAGGCTGGGTATCTACAGAAGAAAGGGAACGTCTTCACGC
ACAATCCTCTGTTTACAATACACAAGAAACACCGATATTTGGAAATTGAT
GGCTCTACGCTAAGATGTTTTCGAAAGAAAGACCAGTCCCACCAGAATCA
ATTGGAGTGGGAGCTTGGGTTGCAGAATGCCAATATTGCTGGGAACAGAG
AACGCTTGGAGATATCTATTCGCGCATGGGATTTTCATGAAGAATTCGCG
CCTGAAACGACGGAAGAATATGATGAGTGGTTTACGGCGTTGAAGGATGC
AAGCGAGAAGAGCATAAAAGACTTTTACGCGTTTACAAGGGTGTTGGGAG
AAGGCCACTTTGGCAAAGTGCTTCTGGCGAGAGACCGTCACACTCGAGAA
AAGTTTGCTGTCAAAGTGATTTCAAAAGACAATCGAGAGATTCGCAGTCA
GACTCTCATTCAGAGAGAACTCGCAATTTTGAAGCTTGTGAACCACACTA
ACATTGTTCGGCTTTATGATCTTTTCGACACACCGGAAAAGTTGTACTTT
GTTCTCGAGTATATGCCAGGCGGTGCCCTCTACGAAGTCCTTCAGTCGAA
GAGTATCAACTTCTCGGAACACCGGGCTTCACTAATTGTGAAGGACATTT
TGCATGGCCTTACATATCTCCACTCAAAAGGTATTGTACATCGTGATGTC
AAGCCTGAAAACATTCTCACGTCCGCTAAGGAGTGGCCTTTCGTATCAAA
GCTTTCTGATTTTGGACTCAGTAACTTCCTAGGAACAGGAGCTTTGGAAT
CGAAGGTTGGTACACCATATTTCTGCGCTCGTGAAGTCGTCACGAATGAA
ACGTACGGCACTAAGGCTGACCTGTGGTCACTGGGTGTCGTTACCTACGA
AATGCTGTCCGGTCGCAAGCCTTTTGAAGGAAAACACACGAAGTCAGTTT
TATATGCAATTCTGGATGGGCGCTACAGTTTTCCGGAAGAGATCTGGCAA
TATATAAGCACGGAAGCTCGGGACTTCGTCGCTAAACTTATTTGCATTGA
TGTCAACAAGCGAATGTCTGCTGAGGAGGCTCTTAATCACCCATGGATTA
CTAATCAAGGTACACCGACTCCATTGGATCCCACTATCCCACGCCCAACC
CCAAGCCGTCAGTTTGAAGCCGACTTGGAAAGCCCAGAACCAATGGAAGC
AGATGCATAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1126807..1128066-

>Ggra5611.t1 ID=Ggra5611.t1|Name=Ggra5611.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000842_pilon:1126807..1128066- (Gracilaria gracilis GNS1m male)
ATGAACCCCGAGATTCCTGGAGAAGGCCCTGCCCCAAACTTGCGCTATGG
AAACAATGTGAAGGCTGGGTATCTACAGAAGAAAGGGAACGTCTTCACGC
ACAATCCTCTGTTTACAATACACAAGAAACACCGATATTTGGAAATTGAT
GGCTCTACGCTAAGATGTTTTCGAAAGAAAGACCAGTCCCACCAGAATCA
ATTGGAGTGGGAGCTTGGGTTGCAGAATGCCAATATTGCTGGGAACAGAG
AACGCTTGGAGATATCTATTCGCGCATGGGATTTTCATGAAGAATTCGCG
CCTGAAACGACGGAAGAATATGATGAGTGGTTTACGGCGTTGAAGGATGC
AAGCGAGAAGAGCATAAAAGACTTTTACGCGTTTACAAGGGTGTTGGGAG
AAGGCCACTTTGGCAAAGTGCTTCTGGCGAGAGACCGTCACACTCGAGAA
AAGTTTGCTGTCAAAGTGATTTCAAAAGACAATCGAGAGATTCGCAGTCA
GACTCTCATTCAGAGAGAACTCGCAATTTTGAAGCTTGTGAACCACACTA
ACATTGTTCGGCTTTATGATCTTTTCGACACACCGGAAAAGTTGTACTTT
GTTCTCGAGTATATGCCAGGCGGTGCCCTCTACGAAGTCCTTCAGTCGAA
GAGTATCAACTTCTCGGAACACCGGGCTTCACTAATTGTGAAGGACATTT
TGCATGGCCTTACATATCTCCACTCAAAAGGTATTGTACATCGTGATGTC
AAGCCTGAAAACATTCTCACGTCCGCTAAGGAGTGGCCTTTCGTATCAAA
GCTTTCTGATTTTGGACTCAGTAACTTCCTAGGAACAGGAGCTTTGGAAT
CGAAGGTTGGTACACCATATTTCTGCGCTCGTGAAGTCGTCACGAATGAA
ACGTACGGCACTAAGGCTGACCTGTGGTCACTGGGTGTCGTTACCTACGA
AATGCTGTCCGGTCGCAAGCCTTTTGAAGGAAAACACACGAAGTCAGTTT
TATATGCAATTCTGGATGGGCGCTACAGTTTTCCGGAAGAGATCTGGCAA
TATATAAGCACGGAAGCTCGGGACTTCGTCGCTAAACTTATTTGCATTGA
TGTCAACAAGCGAATGTCTGCTGAGGAGGCTCTTAATCACCCATGGATTA
CTAATCAAGGTACACCGACTCCATTGGATCCCACTATCCCACGCCCAACC
CCAAGCCGTCAGTTTGAAGCCGACTTGGAAAGCCCAGAACCAATGGAAGC
AGATGCATAA
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