Ggra560.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra560.t1
Unique NameGgra560.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000153_piloncontigtig00000153_pilon:323958..324269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra560Ggra560Gracilaria gracilis GNS1m malegenetig00000153_pilon 323958..324269 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra560.t1.stop1Ggra560.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000153_pilon 323958..323960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra560.t1.CDS1Ggra560.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000153_pilon 323958..324269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra560.t1.exon1Ggra560.t1.exon1Gracilaria gracilis GNS1m maleexontig00000153_pilon 323958..324269 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra560.t1.start1Ggra560.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000153_pilon 324267..324269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra560.t1Ggra560.t1Gracilaria gracilis GNS1m malepolypeptidetig00000153_pilon 323958..324269 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra560.t1 ID=Ggra560.t1|Name=Ggra560.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MVEIFIWGRVVRSQPAVSVSVLPVWAIHITIIILTPITGTVSVVHEVINS
IQISEIVIALVPVRIFVSFIVPTTSVIAFIFAFFWADLADHFREDIPGLL
VAA*
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spliced messenger RNA

>Ggra560.t1 ID=Ggra560.t1|Name=Ggra560.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000153_pilon:323958..324269- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGAAATCTTCATCTGGGGGAGGGTTGTTAGGAGTCAGCCTGCCGT
TTCGGTCTCTGTTCTACCCGTGTGGGCTATACATATTACCATTATCATCC
TCACCCCCATTACCGGCACCGTATCCGTCGTTCATGAAGTCATTAATTCC
ATACAGATTTCCGAGATCGTCATCGCCCTCGTGCCCGTCCGGATCTTTGT
GTCGTTCATCGTCCCCACCACTTCCGTAATTGCCTTCATTTTCGCGTTTT
TTTGGGCAGACCTGGCGGACCACTTTCGGGAGGATATTCCGGGTCTCTTG
GTGGCGGCATAA
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protein sequence of Ggra560.t1

>Ggra560.t1 ID=Ggra560.t1|Name=Ggra560.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MVEIFIWGRVVRSQPAVSVSVLPVWAIHITIIILTPITGTVSVVHEVINS
IQISEIVIALVPVRIFVSFIVPTTSVIAFIFAFFWADLADHFREDIPGLL
VAA*
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mRNA from alignment at tig00000153_pilon:323958..324269-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra560.t1 ID=Ggra560.t1|Name=Ggra560.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000153_pilon:323958..324269- (Gracilaria gracilis GNS1m male)
ATGGTAGAAATCTTCATCTGGGGGAGGGTTGTTAGGAGTCAGCCTGCCGT
TTCGGTCTCTGTTCTACCCGTGTGGGCTATACATATTACCATTATCATCC
TCACCCCCATTACCGGCACCGTATCCGTCGTTCATGAAGTCATTAATTCC
ATACAGATTTCCGAGATCGTCATCGCCCTCGTGCCCGTCCGGATCTTTGT
GTCGTTCATCGTCCCCACCACTTCCGTAATTGCCTTCATTTTCGCGTTTT
TTTGGGCAGACCTGGCGGACCACTTTCGGGAGGATATTCCGGGTCTCTTG
GTGGCGGCATAA
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Coding sequence (CDS) from alignment at tig00000153_pilon:323958..324269-

>Ggra560.t1 ID=Ggra560.t1|Name=Ggra560.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000153_pilon:323958..324269- (Gracilaria gracilis GNS1m male)
ATGGTAGAAATCTTCATCTGGGGGAGGGTTGTTAGGAGTCAGCCTGCCGT
TTCGGTCTCTGTTCTACCCGTGTGGGCTATACATATTACCATTATCATCC
TCACCCCCATTACCGGCACCGTATCCGTCGTTCATGAAGTCATTAATTCC
ATACAGATTTCCGAGATCGTCATCGCCCTCGTGCCCGTCCGGATCTTTGT
GTCGTTCATCGTCCCCACCACTTCCGTAATTGCCTTCATTTTCGCGTTTT
TTTGGGCAGACCTGGCGGACCACTTTCGGGAGGATATTCCGGGTCTCTTG
GTGGCGGCATAA
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