Ggra5599.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5599.t1
Unique NameGgra5599.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1075562..1076070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7994.ENSAMXP00000018189
Preferred nameGLRX2
PFAMsGlutaredoxin
Max annot lvl33208|Metazoa
KEGG koko:K03676
GOsGO:0000302,GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006091,GO:0006139,GO:0006259,GO:0006355,GO:0006518,GO:0006575,GO:0006725,GO:0006749,GO:0006790,GO:0006807,GO:0006915,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0008219,GO:0008794,GO:0009055,GO:0009266,GO:0009605,GO:0009628,GO:0009636,GO:0009889,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0010646,GO:0012501,GO:0015036,GO:0015037,GO:0015038,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0019219,GO:0019222,GO:0019725,GO:0022900,GO:0023051,GO:0030154,GO:0030611,GO:0030613,GO:0030614,GO:0031323,GO:0031326,GO:0031668,GO:0031974,GO:0031981,GO:0032502,GO:0033554,GO:0034641,GO:0042221,GO:0042262,GO:0042493,GO:0042542,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046483,GO:0046677,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051186,GO:0051252,GO:0051716,GO:0051775,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071496,GO:0071704,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
Evalue9.13e-16
EggNOG OGsCOG0695@1|root,KOG1752@2759|Eukaryota,3A8AE@33154|Opisthokonta,3BU43@33208|Metazoa,3DAJ2@33213|Bilateria,48QWE@7711|Chordata,49MGE@7742|Vertebrata,4A7K9@7898|Actinopterygii
DescriptionGlutaredoxin
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5599Ggra5599Gracilaria gracilis GNS1m malegenetig00000842_pilon 1075562..1076070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5599.t1Ggra5599.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1075562..1076070 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5599.t1.stop1Ggra5599.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1075562..1075564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5599.t1.CDS1Ggra5599.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1075562..1075906 -
Ggra5599.t1.CDS2Ggra5599.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1075990..1076070 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5599.t1.exon1Ggra5599.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1075562..1075906 -
Ggra5599.t1.exon2Ggra5599.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1075990..1076070 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5599.t1.intron1Ggra5599.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1075907..1075989 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5599.t1.start1Ggra5599.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1076068..1076070 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5599.t1 ID=Ggra5599.t1|Name=Ggra5599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=142bp
MGNLSSKTPEALAEDLVRDTIHGNNVVIFSKRNCGYCDATKQTLWTEARR
LAKKGCNVPKPAVVELDDGSVPPEVAREVQSVLMKMTGASTVPRVFLNQS
FVGGATETLQYAQEGGLHFALMKAGKCSVREFDREEGFGKA*
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spliced messenger RNA

>Ggra5599.t1 ID=Ggra5599.t1|Name=Ggra5599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00000842_pilon:1075562..1076070- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAATCTCTCGTCAAAAACTCCGGAAGCACTCGCTGAAGATCTTGT
TCGAGATACAATTCATGGTAATAACGTAGTTATATTTAGCAAGAGAAATT
GTGGATATTGCGACGCAACCAAACAAACCCTATGGACTGAGGCTCGACGG
CTTGCAAAGAAAGGATGTAACGTCCCAAAGCCTGCTGTTGTGGAACTGGA
TGATGGAAGTGTACCTCCGGAAGTTGCGCGAGAAGTTCAATCTGTGTTAA
TGAAAATGACGGGCGCTTCAACAGTGCCCAGGGTCTTTCTTAATCAGTCT
TTCGTGGGTGGTGCTACCGAGACGCTTCAATATGCGCAGGAAGGGGGACT
ACATTTCGCTCTTATGAAAGCTGGAAAGTGCAGTGTTCGTGAGTTTGATA
GAGAAGAGGGGTTTGGAAAAGCATAG
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protein sequence of Ggra5599.t1

>Ggra5599.t1 ID=Ggra5599.t1|Name=Ggra5599.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=142bp
MGNLSSKTPEALAEDLVRDTIHGNNVVIFSKRNCGYCDATKQTLWTEARR
LAKKGCNVPKPAVVELDDGSVPPEVAREVQSVLMKMTGASTVPRVFLNQS
FVGGATETLQYAQEGGLHFALMKAGKCSVREFDREEGFGKA*
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mRNA from alignment at tig00000842_pilon:1075562..1076070-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5599.t1 ID=Ggra5599.t1|Name=Ggra5599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=509bp|location=Sequence derived from alignment at tig00000842_pilon:1075562..1076070- (Gracilaria gracilis GNS1m male)
ATGGGAAATCTCTCGTCAAAAACTCCGGAAGCACTCGCTGAAGATCTTGT
TCGAGATACAATTCATGGTAATAACGTAGTTGTAAGTAGAGCGTTCGATT
TCAGTGGCAAATCTTCGATGCGAACTAGCCCTTCTGAAAACTGATTTTGT
GTGCCGATACGAAGATATTTAGCAAGAGAAATTGTGGATATTGCGACGCA
ACCAAACAAACCCTATGGACTGAGGCTCGACGGCTTGCAAAGAAAGGATG
TAACGTCCCAAAGCCTGCTGTTGTGGAACTGGATGATGGAAGTGTACCTC
CGGAAGTTGCGCGAGAAGTTCAATCTGTGTTAATGAAAATGACGGGCGCT
TCAACAGTGCCCAGGGTCTTTCTTAATCAGTCTTTCGTGGGTGGTGCTAC
CGAGACGCTTCAATATGCGCAGGAAGGGGGACTACATTTCGCTCTTATGA
AAGCTGGAAAGTGCAGTGTTCGTGAGTTTGATAGAGAAGAGGGGTTTGGA
AAAGCATAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:1075562..1076070-

>Ggra5599.t1 ID=Ggra5599.t1|Name=Ggra5599.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=426bp|location=Sequence derived from alignment at tig00000842_pilon:1075562..1076070- (Gracilaria gracilis GNS1m male)
ATGGGAAATCTCTCGTCAAAAACTCCGGAAGCACTCGCTGAAGATCTTGT
TCGAGATACAATTCATGGTAATAACGTAGTTATATTTAGCAAGAGAAATT
GTGGATATTGCGACGCAACCAAACAAACCCTATGGACTGAGGCTCGACGG
CTTGCAAAGAAAGGATGTAACGTCCCAAAGCCTGCTGTTGTGGAACTGGA
TGATGGAAGTGTACCTCCGGAAGTTGCGCGAGAAGTTCAATCTGTGTTAA
TGAAAATGACGGGCGCTTCAACAGTGCCCAGGGTCTTTCTTAATCAGTCT
TTCGTGGGTGGTGCTACCGAGACGCTTCAATATGCGCAGGAAGGGGGACT
ACATTTCGCTCTTATGAAAGCTGGAAAGTGCAGTGTTCGTGAGTTTGATA
GAGAAGAGGGGTTTGGAAAAGCATAG
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