Ggra5596.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5596.t1
Unique NameGgra5596.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1066319..1067746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29760.VIT_12s0057g01500.t01
PFAMsNa_Ca_ex
Max annot lvl35493|Streptophyta
KEGG koko:K07300
KEGG TC2.A.19
GOsGO:0000325,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009705,GO:0016020,GO:0031090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Evalue2.9e-06
EggNOG OGsCOG0387@1|root,KOG0118@1|root,KOG0118@2759|Eukaryota,KOG1397@2759|Eukaryota,37I79@33090|Viridiplantae,3G7FR@35493|Streptophyta
DescriptionBelongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5596Ggra5596Gracilaria gracilis GNS1m malegenetig00000842_pilon 1066319..1067746 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5596.t1.start1Ggra5596.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1066319..1066321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5596.t1.CDS1Ggra5596.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1066319..1067746 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5596.t1.exon1Ggra5596.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1066319..1067746 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5596.t1.stop1Ggra5596.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1067744..1067746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5596.t1Ggra5596.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1066319..1067746 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5596.t1 ID=Ggra5596.t1|Name=Ggra5596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=476bp
MRLGNSSDHAHFPSRLHLDHPQQIHPLSHRSLPALRPPPSSTVASLPSRL
ASPPSPQRPAQPRAPISRKRPASLMFNFSKPAARPRSASDQQIQVLTDLD
NHHRPDHSQIPCPRDHQQQLQPRHLPLHQCTDVVHHSHDLRDDDDAASHL
FPFHEPMLGSPSTAAKRMRSCADSDTGSSSCRDFDEPEVVAPDSVPALVH
DVKRMLEYVSSKPSLQTGSASFLRDYLRTMLMQNAHSASEAIQAASKAHR
AEVIAGRRKSREPFNKIPDEIAKHVFGFLGGRDLARAREVCKRWNDFASE
ERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKW
TCRLQKTGRFICNLIAHQISGTPIGDVGLPNVLVVERRFNIVHLQTFILN
DASVLYFEPESEEDRHGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYT
RTKIEYHGRSLLGVVQNAYNPLGPL*
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spliced messenger RNA

>Ggra5596.t1 ID=Ggra5596.t1|Name=Ggra5596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000842_pilon:1066319..1067746+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCTTGGAAACTCCTCTGATCACGCCCATTTCCCATCACGCCTTCA
CCTCGACCACCCACAACAAATTCACCCGCTGTCACACCGCTCGCTTCCCG
CGCTTCGTCCACCCCCCTCTTCAACTGTCGCCAGTCTGCCGTCGCGCCTA
GCTTCCCCGCCTTCTCCCCAGCGCCCCGCTCAACCGCGCGCCCCCATTTC
GCGCAAGCGCCCCGCCTCCCTCATGTTCAACTTCTCAAAGCCTGCTGCCC
GCCCGCGTTCAGCCTCTGACCAACAAATACAGGTGCTCACCGACTTGGAC
AACCACCACCGTCCGGACCATTCGCAGATTCCGTGTCCGCGCGACCACCA
GCAGCAGCTTCAACCGCGCCATCTGCCACTGCACCAGTGCACCGACGTTG
TGCACCACTCGCACGACCTGCGCGATGACGACGATGCTGCTTCTCACCTC
TTCCCTTTCCATGAGCCTATGCTAGGTAGTCCCAGTACCGCCGCAAAGCG
CATGAGGTCGTGCGCTGACTCGGACACGGGAAGCTCCAGCTGCAGGGACT
TTGACGAGCCTGAGGTTGTTGCACCGGACTCCGTACCTGCCCTTGTCCAT
GACGTCAAACGTATGCTCGAGTACGTTTCGAGCAAGCCCTCGCTGCAGAC
TGGCTCCGCTAGTTTCTTACGCGACTATCTGCGCACAATGCTCATGCAGA
ATGCACACTCTGCCTCGGAGGCCATTCAGGCCGCGAGCAAGGCTCACCGC
GCTGAAGTGATTGCCGGTCGTCGAAAATCGAGAGAGCCGTTCAACAAGAT
TCCGGATGAGATCGCCAAGCATGTGTTTGGTTTCCTTGGTGGAAGAGACC
TCGCACGTGCGCGCGAGGTTTGTAAGAGGTGGAACGACTTTGCAAGTGAG
GAGCGACTGTGGAAGAGACTTTGCACTCAGAATTGGAGGTCGTTAGAGAC
CGATCACTATCTGTGGCGCATCCTGGATAAGGAGATTTCTCCGGGAGACC
CCAACTGCTGGCGTAACATCTACCCAAAGATTGAGAAGACGCCAAAGTGG
ACATGTCGCCTGCAGAAAACAGGTCGCTTCATTTGTAACTTGATTGCACA
TCAGATCTCTGGTACTCCCATTGGCGATGTGGGTCTGCCCAATGTTTTGG
TTGTGGAACGAAGGTTTAACATTGTGCATCTACAAACCTTTATACTCAAT
GATGCTTCAGTTCTTTATTTTGAACCGGAGTCAGAAGAGGATCGTCATGG
CTTTGATGAGTTCATTGAGTACCTCAACAAGAGAACACGTGCTGGACTTG
CATTGGAGGAGCAACGGAGGTTCATCTTCATTCCGCCATGTGACTACACC
CGTACAAAGATAGAATACCATGGGCGCAGTCTTCTTGGTGTCGTACAAAA
CGCCTACAACCCACTTGGACCATTATGA
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protein sequence of Ggra5596.t1

>Ggra5596.t1 ID=Ggra5596.t1|Name=Ggra5596.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=476bp
MRLGNSSDHAHFPSRLHLDHPQQIHPLSHRSLPALRPPPSSTVASLPSRL
ASPPSPQRPAQPRAPISRKRPASLMFNFSKPAARPRSASDQQIQVLTDLD
NHHRPDHSQIPCPRDHQQQLQPRHLPLHQCTDVVHHSHDLRDDDDAASHL
FPFHEPMLGSPSTAAKRMRSCADSDTGSSSCRDFDEPEVVAPDSVPALVH
DVKRMLEYVSSKPSLQTGSASFLRDYLRTMLMQNAHSASEAIQAASKAHR
AEVIAGRRKSREPFNKIPDEIAKHVFGFLGGRDLARAREVCKRWNDFASE
ERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKW
TCRLQKTGRFICNLIAHQISGTPIGDVGLPNVLVVERRFNIVHLQTFILN
DASVLYFEPESEEDRHGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYT
RTKIEYHGRSLLGVVQNAYNPLGPL*
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mRNA from alignment at tig00000842_pilon:1066319..1067746+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5596.t1 ID=Ggra5596.t1|Name=Ggra5596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000842_pilon:1066319..1067746+ (Gracilaria gracilis GNS1m male)
ATGAGGCTTGGAAACTCCTCTGATCACGCCCATTTCCCATCACGCCTTCA
CCTCGACCACCCACAACAAATTCACCCGCTGTCACACCGCTCGCTTCCCG
CGCTTCGTCCACCCCCCTCTTCAACTGTCGCCAGTCTGCCGTCGCGCCTA
GCTTCCCCGCCTTCTCCCCAGCGCCCCGCTCAACCGCGCGCCCCCATTTC
GCGCAAGCGCCCCGCCTCCCTCATGTTCAACTTCTCAAAGCCTGCTGCCC
GCCCGCGTTCAGCCTCTGACCAACAAATACAGGTGCTCACCGACTTGGAC
AACCACCACCGTCCGGACCATTCGCAGATTCCGTGTCCGCGCGACCACCA
GCAGCAGCTTCAACCGCGCCATCTGCCACTGCACCAGTGCACCGACGTTG
TGCACCACTCGCACGACCTGCGCGATGACGACGATGCTGCTTCTCACCTC
TTCCCTTTCCATGAGCCTATGCTAGGTAGTCCCAGTACCGCCGCAAAGCG
CATGAGGTCGTGCGCTGACTCGGACACGGGAAGCTCCAGCTGCAGGGACT
TTGACGAGCCTGAGGTTGTTGCACCGGACTCCGTACCTGCCCTTGTCCAT
GACGTCAAACGTATGCTCGAGTACGTTTCGAGCAAGCCCTCGCTGCAGAC
TGGCTCCGCTAGTTTCTTACGCGACTATCTGCGCACAATGCTCATGCAGA
ATGCACACTCTGCCTCGGAGGCCATTCAGGCCGCGAGCAAGGCTCACCGC
GCTGAAGTGATTGCCGGTCGTCGAAAATCGAGAGAGCCGTTCAACAAGAT
TCCGGATGAGATCGCCAAGCATGTGTTTGGTTTCCTTGGTGGAAGAGACC
TCGCACGTGCGCGCGAGGTTTGTAAGAGGTGGAACGACTTTGCAAGTGAG
GAGCGACTGTGGAAGAGACTTTGCACTCAGAATTGGAGGTCGTTAGAGAC
CGATCACTATCTGTGGCGCATCCTGGATAAGGAGATTTCTCCGGGAGACC
CCAACTGCTGGCGTAACATCTACCCAAAGATTGAGAAGACGCCAAAGTGG
ACATGTCGCCTGCAGAAAACAGGTCGCTTCATTTGTAACTTGATTGCACA
TCAGATCTCTGGTACTCCCATTGGCGATGTGGGTCTGCCCAATGTTTTGG
TTGTGGAACGAAGGTTTAACATTGTGCATCTACAAACCTTTATACTCAAT
GATGCTTCAGTTCTTTATTTTGAACCGGAGTCAGAAGAGGATCGTCATGG
CTTTGATGAGTTCATTGAGTACCTCAACAAGAGAACACGTGCTGGACTTG
CATTGGAGGAGCAACGGAGGTTCATCTTCATTCCGCCATGTGACTACACC
CGTACAAAGATAGAATACCATGGGCGCAGTCTTCTTGGTGTCGTACAAAA
CGCCTACAACCCACTTGGACCATTATGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1066319..1067746+

>Ggra5596.t1 ID=Ggra5596.t1|Name=Ggra5596.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00000842_pilon:1066319..1067746+ (Gracilaria gracilis GNS1m male)
ATGAGGCTTGGAAACTCCTCTGATCACGCCCATTTCCCATCACGCCTTCA
CCTCGACCACCCACAACAAATTCACCCGCTGTCACACCGCTCGCTTCCCG
CGCTTCGTCCACCCCCCTCTTCAACTGTCGCCAGTCTGCCGTCGCGCCTA
GCTTCCCCGCCTTCTCCCCAGCGCCCCGCTCAACCGCGCGCCCCCATTTC
GCGCAAGCGCCCCGCCTCCCTCATGTTCAACTTCTCAAAGCCTGCTGCCC
GCCCGCGTTCAGCCTCTGACCAACAAATACAGGTGCTCACCGACTTGGAC
AACCACCACCGTCCGGACCATTCGCAGATTCCGTGTCCGCGCGACCACCA
GCAGCAGCTTCAACCGCGCCATCTGCCACTGCACCAGTGCACCGACGTTG
TGCACCACTCGCACGACCTGCGCGATGACGACGATGCTGCTTCTCACCTC
TTCCCTTTCCATGAGCCTATGCTAGGTAGTCCCAGTACCGCCGCAAAGCG
CATGAGGTCGTGCGCTGACTCGGACACGGGAAGCTCCAGCTGCAGGGACT
TTGACGAGCCTGAGGTTGTTGCACCGGACTCCGTACCTGCCCTTGTCCAT
GACGTCAAACGTATGCTCGAGTACGTTTCGAGCAAGCCCTCGCTGCAGAC
TGGCTCCGCTAGTTTCTTACGCGACTATCTGCGCACAATGCTCATGCAGA
ATGCACACTCTGCCTCGGAGGCCATTCAGGCCGCGAGCAAGGCTCACCGC
GCTGAAGTGATTGCCGGTCGTCGAAAATCGAGAGAGCCGTTCAACAAGAT
TCCGGATGAGATCGCCAAGCATGTGTTTGGTTTCCTTGGTGGAAGAGACC
TCGCACGTGCGCGCGAGGTTTGTAAGAGGTGGAACGACTTTGCAAGTGAG
GAGCGACTGTGGAAGAGACTTTGCACTCAGAATTGGAGGTCGTTAGAGAC
CGATCACTATCTGTGGCGCATCCTGGATAAGGAGATTTCTCCGGGAGACC
CCAACTGCTGGCGTAACATCTACCCAAAGATTGAGAAGACGCCAAAGTGG
ACATGTCGCCTGCAGAAAACAGGTCGCTTCATTTGTAACTTGATTGCACA
TCAGATCTCTGGTACTCCCATTGGCGATGTGGGTCTGCCCAATGTTTTGG
TTGTGGAACGAAGGTTTAACATTGTGCATCTACAAACCTTTATACTCAAT
GATGCTTCAGTTCTTTATTTTGAACCGGAGTCAGAAGAGGATCGTCATGG
CTTTGATGAGTTCATTGAGTACCTCAACAAGAGAACACGTGCTGGACTTG
CATTGGAGGAGCAACGGAGGTTCATCTTCATTCCGCCATGTGACTACACC
CGTACAAAGATAGAATACCATGGGCGCAGTCTTCTTGGTGTCGTACAAAA
CGCCTACAACCCACTTGGACCATTATGA
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