Ggra559.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra559.t1
Unique Name	Ggra559.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000153_pilon	contig	tig00000153_pilon:292459..293592 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	998674.ATTE01000001_gene1227
PFAMs	DUF917
Max annot lvl	1236\|Gammaproteobacteria
KEGG ko	ko:K09703
Evalue	1.43e-77
EggNOG OGs	COG3535@1\|root,COG3535@2\|Bacteria,1NCBV@1224\|Proteobacteria,1RQF0@1236\|Gammaproteobacteria
Description	Protein of unknown function (DUF917)
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra559	Ggra559	Gracilaria gracilis GNS1m male	gene	tig00000153_pilon 292459..293592 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra559.t1.start1	Ggra559.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000153_pilon 292459..292461 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra559.t1.CDS1	Ggra559.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000153_pilon 292459..293592 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra559.t1.exon1	Ggra559.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000153_pilon 292459..293592 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra559.t1.stop1	Ggra559.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000153_pilon 293590..293592 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra559.t1	Ggra559.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000153_pilon 292459..293592 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000153_pilon:292459..293592+
coding sequence from alignment at tig00000153_pilon:292459..293592+

mRNA sequence

>Ggra559.t1 ID=Ggra559.t1|Name=Ggra559.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MQHPAPRLLSPQDLRDAVLGSTVLAAGGGGQLSIVAHLVESIISSGRPIQ
LLALNNVPPDAQVCTAYFMGPSSKQPDTAPPAHQAQIQRHHEPPVMEAVH
LMQRSVGAINTFFPLEIGAGNLALAFYIASKIDNAFVVDADLVGRSVPEL
THAMMRLDRAALPAAFVAAVNEFGETFLIENVSNSARMEHLLRALCSADN
GEIAAVQRLPHANKLRQHLICGTVSAAMTIGRDMRVAFAHEEDVAQQVAC
ENDGTVVFRGTVTSANFQDEGGFTKGRVHIEGADEWKGRKYTLQAKNENM
AGWLDGELNATIPDIISVFDVMEGSAVINPKHRVGMRVAVVVLPAWEAHL
EEENIRVFGPSYIGLTEPFKSRVLRRS*

spliced messenger RNA

>Ggra559.t1 ID=Ggra559.t1|Name=Ggra559.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000153_pilon:292459..293592+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACACCCAGCGCCCCGCCTCCTCTCGCCACAAGATCTGCGCGATGC
AGTGCTCGGATCCACCGTTCTCGCCGCCGGCGGTGGTGGCCAGTTGTCCA
TTGTGGCCCACCTTGTTGAATCCATCATCTCCTCCGGCCGCCCCATCCAA
CTTCTCGCCCTCAACAACGTCCCTCCCGACGCGCAGGTATGTACCGCATA
CTTCATGGGCCCGTCGTCAAAGCAGCCCGACACAGCCCCTCCAGCCCACC
AGGCGCAAATTCAGCGCCACCATGAGCCACCCGTGATGGAAGCTGTCCAT
CTCATGCAGCGTAGCGTCGGTGCCATCAACACCTTCTTCCCCCTCGAGAT
CGGCGCCGGAAATCTTGCGCTGGCCTTCTATATTGCCTCAAAGATCGATA
ATGCTTTCGTGGTCGACGCCGATCTTGTCGGCCGCAGCGTGCCTGAGCTC
ACGCACGCTATGATGCGCCTGGACCGCGCAGCGCTTCCGGCTGCTTTCGT
CGCCGCTGTCAACGAGTTTGGAGAGACGTTTCTTATTGAAAACGTGTCTA
ATTCTGCCCGCATGGAACATTTGCTTCGCGCATTGTGTAGCGCGGATAAC
GGAGAGATTGCTGCCGTGCAGCGCCTGCCGCATGCAAATAAGCTACGCCA
ACATCTTATTTGTGGCACCGTTTCTGCTGCCATGACTATTGGGCGAGATA
TGCGAGTGGCTTTTGCTCACGAAGAAGACGTCGCGCAACAAGTTGCTTGC
GAGAATGACGGTACCGTCGTATTTCGAGGAACGGTGACAAGCGCCAATTT
CCAGGACGAGGGTGGTTTTACAAAGGGCCGAGTTCACATTGAAGGAGCCG
ACGAGTGGAAAGGGAGGAAGTATACCCTACAGGCAAAGAATGAAAACATG
GCTGGATGGTTGGATGGAGAGCTCAACGCCACCATTCCAGACATTATCTC
TGTGTTTGATGTGATGGAAGGGAGCGCGGTTATCAACCCCAAGCACCGCG
TTGGTATGCGTGTTGCTGTTGTGGTTTTGCCGGCCTGGGAAGCGCATTTG
GAGGAGGAGAACATTCGCGTTTTCGGACCTTCATACATCGGACTAACCGA
GCCTTTTAAGTCTAGGGTTCTCCGTCGTTCGTGA

protein sequence of Ggra559.t1

>Ggra559.t1 ID=Ggra559.t1|Name=Ggra559.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MQHPAPRLLSPQDLRDAVLGSTVLAAGGGGQLSIVAHLVESIISSGRPIQ
LLALNNVPPDAQVCTAYFMGPSSKQPDTAPPAHQAQIQRHHEPPVMEAVH
LMQRSVGAINTFFPLEIGAGNLALAFYIASKIDNAFVVDADLVGRSVPEL
THAMMRLDRAALPAAFVAAVNEFGETFLIENVSNSARMEHLLRALCSADN
GEIAAVQRLPHANKLRQHLICGTVSAAMTIGRDMRVAFAHEEDVAQQVAC
ENDGTVVFRGTVTSANFQDEGGFTKGRVHIEGADEWKGRKYTLQAKNENM
AGWLDGELNATIPDIISVFDVMEGSAVINPKHRVGMRVAVVVLPAWEAHL
EEENIRVFGPSYIGLTEPFKSRVLRRS*

mRNA from alignment at tig00000153_pilon:292459..293592+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra559.t1 ID=Ggra559.t1|Name=Ggra559.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000153_pilon:292459..293592+ (Gracilaria gracilis GNS1m male)
ATGCAACACCCAGCGCCCCGCCTCCTCTCGCCACAAGATCTGCGCGATGC
AGTGCTCGGATCCACCGTTCTCGCCGCCGGCGGTGGTGGCCAGTTGTCCA
TTGTGGCCCACCTTGTTGAATCCATCATCTCCTCCGGCCGCCCCATCCAA
CTTCTCGCCCTCAACAACGTCCCTCCCGACGCGCAGGTATGTACCGCATA
CTTCATGGGCCCGTCGTCAAAGCAGCCCGACACAGCCCCTCCAGCCCACC
AGGCGCAAATTCAGCGCCACCATGAGCCACCCGTGATGGAAGCTGTCCAT
CTCATGCAGCGTAGCGTCGGTGCCATCAACACCTTCTTCCCCCTCGAGAT
CGGCGCCGGAAATCTTGCGCTGGCCTTCTATATTGCCTCAAAGATCGATA
ATGCTTTCGTGGTCGACGCCGATCTTGTCGGCCGCAGCGTGCCTGAGCTC
ACGCACGCTATGATGCGCCTGGACCGCGCAGCGCTTCCGGCTGCTTTCGT
CGCCGCTGTCAACGAGTTTGGAGAGACGTTTCTTATTGAAAACGTGTCTA
ATTCTGCCCGCATGGAACATTTGCTTCGCGCATTGTGTAGCGCGGATAAC
GGAGAGATTGCTGCCGTGCAGCGCCTGCCGCATGCAAATAAGCTACGCCA
ACATCTTATTTGTGGCACCGTTTCTGCTGCCATGACTATTGGGCGAGATA
TGCGAGTGGCTTTTGCTCACGAAGAAGACGTCGCGCAACAAGTTGCTTGC
GAGAATGACGGTACCGTCGTATTTCGAGGAACGGTGACAAGCGCCAATTT
CCAGGACGAGGGTGGTTTTACAAAGGGCCGAGTTCACATTGAAGGAGCCG
ACGAGTGGAAAGGGAGGAAGTATACCCTACAGGCAAAGAATGAAAACATG
GCTGGATGGTTGGATGGAGAGCTCAACGCCACCATTCCAGACATTATCTC
TGTGTTTGATGTGATGGAAGGGAGCGCGGTTATCAACCCCAAGCACCGCG
TTGGTATGCGTGTTGCTGTTGTGGTTTTGCCGGCCTGGGAAGCGCATTTG
GAGGAGGAGAACATTCGCGTTTTCGGACCTTCATACATCGGACTAACCGA
GCCTTTTAAGTCTAGGGTTCTCCGTCGTTCGTGA

Coding sequence (CDS) from alignment at tig00000153_pilon:292459..293592+

>Ggra559.t1 ID=Ggra559.t1|Name=Ggra559.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000153_pilon:292459..293592+ (Gracilaria gracilis GNS1m male)
ATGCAACACCCAGCGCCCCGCCTCCTCTCGCCACAAGATCTGCGCGATGC
AGTGCTCGGATCCACCGTTCTCGCCGCCGGCGGTGGTGGCCAGTTGTCCA
TTGTGGCCCACCTTGTTGAATCCATCATCTCCTCCGGCCGCCCCATCCAA
CTTCTCGCCCTCAACAACGTCCCTCCCGACGCGCAGGTATGTACCGCATA
CTTCATGGGCCCGTCGTCAAAGCAGCCCGACACAGCCCCTCCAGCCCACC
AGGCGCAAATTCAGCGCCACCATGAGCCACCCGTGATGGAAGCTGTCCAT
CTCATGCAGCGTAGCGTCGGTGCCATCAACACCTTCTTCCCCCTCGAGAT
CGGCGCCGGAAATCTTGCGCTGGCCTTCTATATTGCCTCAAAGATCGATA
ATGCTTTCGTGGTCGACGCCGATCTTGTCGGCCGCAGCGTGCCTGAGCTC
ACGCACGCTATGATGCGCCTGGACCGCGCAGCGCTTCCGGCTGCTTTCGT
CGCCGCTGTCAACGAGTTTGGAGAGACGTTTCTTATTGAAAACGTGTCTA
ATTCTGCCCGCATGGAACATTTGCTTCGCGCATTGTGTAGCGCGGATAAC
GGAGAGATTGCTGCCGTGCAGCGCCTGCCGCATGCAAATAAGCTACGCCA
ACATCTTATTTGTGGCACCGTTTCTGCTGCCATGACTATTGGGCGAGATA
TGCGAGTGGCTTTTGCTCACGAAGAAGACGTCGCGCAACAAGTTGCTTGC
GAGAATGACGGTACCGTCGTATTTCGAGGAACGGTGACAAGCGCCAATTT
CCAGGACGAGGGTGGTTTTACAAAGGGCCGAGTTCACATTGAAGGAGCCG
ACGAGTGGAAAGGGAGGAAGTATACCCTACAGGCAAAGAATGAAAACATG
GCTGGATGGTTGGATGGAGAGCTCAACGCCACCATTCCAGACATTATCTC
TGTGTTTGATGTGATGGAAGGGAGCGCGGTTATCAACCCCAAGCACCGCG
TTGGTATGCGTGTTGCTGTTGTGGTTTTGCCGGCCTGGGAAGCGCATTTG
GAGGAGGAGAACATTCGCGTTTTCGGACCTTCATACATCGGACTAACCGA
GCCTTTTAAGTCTAGGGTTCTCCGTCGTTCGTGA