Ggra5576.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5576.t1
Unique NameGgra5576.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1004264..1004824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5576Ggra5576Gracilaria gracilis GNS1m malegenetig00000842_pilon 1004264..1004824 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5576.t1.stop1Ggra5576.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1004264..1004266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5576.t1.CDS1Ggra5576.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1004264..1004824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5576.t1.exon1Ggra5576.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1004264..1004824 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5576.t1.start1Ggra5576.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1004822..1004824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5576.t1Ggra5576.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1004264..1004824 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5576.t1 ID=Ggra5576.t1|Name=Ggra5576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=187bp
MTLASATAATVAAHVHARSSNERKRAARRSVSVASGSTHCGSEESGAPPE
KKSRPSQAKLGASAQQHGKGAAQQLLQFPAEVLLDLAGSTSAEVRRMNED
ERALVHYKRRLRNRESAKRSRAKRQATLGDLQSELEELRQLTASLVERCM
RFAKKSERQSLELDTLRKEKQLLESLLRSSSGNCSL*
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spliced messenger RNA

>Ggra5576.t1 ID=Ggra5576.t1|Name=Ggra5576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000842_pilon:1004264..1004824- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTGGCGTCCGCAACCGCCGCCACCGTGGCGGCACACGTGCACGC
TCGCTCCAGCAACGAGCGCAAGAGGGCGGCCAGAAGAAGCGTCAGCGTGG
CCAGTGGCAGCACGCACTGCGGCAGCGAGGAGAGCGGCGCCCCGCCGGAG
AAGAAGTCGCGCCCGAGTCAGGCCAAGCTTGGCGCCAGCGCACAGCAGCA
CGGCAAGGGCGCGGCGCAGCAGTTGTTGCAATTCCCGGCCGAGGTGCTGC
TCGATCTGGCCGGCTCCACCAGCGCGGAGGTGCGGCGCATGAATGAAGAT
GAGCGTGCGCTGGTGCACTACAAGCGTCGGTTGAGAAACAGGGAGAGTGC
GAAGCGATCTCGCGCCAAGCGGCAGGCCACCTTGGGAGATCTGCAGAGCG
AGTTGGAGGAGCTGCGACAGTTGACGGCGTCGCTGGTGGAGCGTTGCATG
CGCTTTGCGAAGAAGAGTGAGCGGCAGAGCTTGGAGCTGGATACGTTGAG
AAAGGAGAAGCAATTGCTGGAGAGTCTGTTGAGAAGTAGCAGCGGAAACT
GCTCTCTGTGA
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protein sequence of Ggra5576.t1

>Ggra5576.t1 ID=Ggra5576.t1|Name=Ggra5576.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=187bp
MTLASATAATVAAHVHARSSNERKRAARRSVSVASGSTHCGSEESGAPPE
KKSRPSQAKLGASAQQHGKGAAQQLLQFPAEVLLDLAGSTSAEVRRMNED
ERALVHYKRRLRNRESAKRSRAKRQATLGDLQSELEELRQLTASLVERCM
RFAKKSERQSLELDTLRKEKQLLESLLRSSSGNCSL*
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mRNA from alignment at tig00000842_pilon:1004264..1004824-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5576.t1 ID=Ggra5576.t1|Name=Ggra5576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000842_pilon:1004264..1004824- (Gracilaria gracilis GNS1m male)
ATGACGCTGGCGTCCGCAACCGCCGCCACCGTGGCGGCACACGTGCACGC
TCGCTCCAGCAACGAGCGCAAGAGGGCGGCCAGAAGAAGCGTCAGCGTGG
CCAGTGGCAGCACGCACTGCGGCAGCGAGGAGAGCGGCGCCCCGCCGGAG
AAGAAGTCGCGCCCGAGTCAGGCCAAGCTTGGCGCCAGCGCACAGCAGCA
CGGCAAGGGCGCGGCGCAGCAGTTGTTGCAATTCCCGGCCGAGGTGCTGC
TCGATCTGGCCGGCTCCACCAGCGCGGAGGTGCGGCGCATGAATGAAGAT
GAGCGTGCGCTGGTGCACTACAAGCGTCGGTTGAGAAACAGGGAGAGTGC
GAAGCGATCTCGCGCCAAGCGGCAGGCCACCTTGGGAGATCTGCAGAGCG
AGTTGGAGGAGCTGCGACAGTTGACGGCGTCGCTGGTGGAGCGTTGCATG
CGCTTTGCGAAGAAGAGTGAGCGGCAGAGCTTGGAGCTGGATACGTTGAG
AAAGGAGAAGCAATTGCTGGAGAGTCTGTTGAGAAGTAGCAGCGGAAACT
GCTCTCTGTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1004264..1004824-

>Ggra5576.t1 ID=Ggra5576.t1|Name=Ggra5576.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00000842_pilon:1004264..1004824- (Gracilaria gracilis GNS1m male)
ATGACGCTGGCGTCCGCAACCGCCGCCACCGTGGCGGCACACGTGCACGC
TCGCTCCAGCAACGAGCGCAAGAGGGCGGCCAGAAGAAGCGTCAGCGTGG
CCAGTGGCAGCACGCACTGCGGCAGCGAGGAGAGCGGCGCCCCGCCGGAG
AAGAAGTCGCGCCCGAGTCAGGCCAAGCTTGGCGCCAGCGCACAGCAGCA
CGGCAAGGGCGCGGCGCAGCAGTTGTTGCAATTCCCGGCCGAGGTGCTGC
TCGATCTGGCCGGCTCCACCAGCGCGGAGGTGCGGCGCATGAATGAAGAT
GAGCGTGCGCTGGTGCACTACAAGCGTCGGTTGAGAAACAGGGAGAGTGC
GAAGCGATCTCGCGCCAAGCGGCAGGCCACCTTGGGAGATCTGCAGAGCG
AGTTGGAGGAGCTGCGACAGTTGACGGCGTCGCTGGTGGAGCGTTGCATG
CGCTTTGCGAAGAAGAGTGAGCGGCAGAGCTTGGAGCTGGATACGTTGAG
AAAGGAGAAGCAATTGCTGGAGAGTCTGTTGAGAAGTAGCAGCGGAAACT
GCTCTCTGTGA
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