Ggra5571.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5571.t1
Unique NameGgra5571.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:986582..987655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704080.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
Evalue1.47e-102
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
DescriptionS-adenosyl-L-methionine transmembrane transport
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5571Ggra5571Gracilaria gracilis GNS1m malegenetig00000842_pilon 986582..987655 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5571.t1.stop1Ggra5571.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 986582..986584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5571.t1.CDS1Ggra5571.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 986582..987655 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5571.t1.exon1Ggra5571.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 986582..987655 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5571.t1.start1Ggra5571.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 987653..987655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5571.t1Ggra5571.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 986582..987655 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5571.t1 ID=Ggra5571.t1|Name=Ggra5571.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MEREGFKELRWKVATAAAAVQLTFQEKMLAGAIARGIAQTVLHPVDVMRT
RLQARNVSTSLRPGVFLKGVIPQIVLAIPAGALQFVAFESAKDKLRTLIP
DENLSQTRILLAGAVGALVAATCRIPQEVLKQPLQAEIYPNVFVALKETV
GKNGIGALYKGSIATISRDIPWNALSFMFHGQGKKMFKSTKGRDPANDEN
LVIAGVAGALAAIIMTPIDVVKTRIMTQRVGSTVYSGVIGTFSKIVREEG
AGTLMKGVIPRIVFLAPLAGITFSVYEAVAANIKKRKTVAEPVAYNSLQE
AFMTHLQPGLKERTRTTTLALRFSKSSVRLVSANTSSYGMGLGDYDSPSP
FVFSLSV*
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spliced messenger RNA

>Ggra5571.t1 ID=Ggra5571.t1|Name=Ggra5571.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000842_pilon:986582..987655- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGAGAAGGTTTCAAAGAATTGCGATGGAAGGTCGCCACGGCCGC
AGCCGCCGTGCAACTCACCTTTCAGGAGAAGATGCTCGCGGGCGCTATTG
CCAGGGGCATTGCTCAGACCGTATTGCACCCGGTTGATGTCATGCGTACG
CGTCTGCAGGCGCGTAACGTCAGTACCTCGTTGAGGCCGGGCGTGTTTTT
GAAGGGAGTCATTCCGCAAATCGTGCTCGCCATCCCGGCCGGTGCGCTGC
AATTCGTCGCGTTTGAATCTGCAAAGGACAAGTTACGCACTTTGATCCCG
GATGAGAACCTTTCACAAACGCGTATTTTGCTTGCTGGTGCGGTTGGTGC
GTTGGTTGCTGCCACATGTCGTATTCCACAAGAGGTTCTCAAACAGCCGC
TTCAGGCTGAGATATATCCCAATGTGTTTGTCGCGCTCAAGGAGACCGTG
GGCAAGAATGGAATCGGTGCGCTTTACAAGGGCTCCATAGCCACCATCTC
AAGGGATATTCCGTGGAATGCGCTTTCTTTCATGTTTCACGGACAGGGGA
AGAAGATGTTCAAGTCCACCAAGGGACGTGATCCTGCCAACGATGAAAAC
CTTGTTATTGCAGGCGTCGCAGGGGCACTCGCGGCCATAATTATGACCCC
TATTGATGTCGTCAAGACGCGTATCATGACACAGCGCGTTGGATCCACGG
TGTACTCTGGTGTCATCGGTACCTTCTCAAAGATTGTTAGGGAAGAAGGC
GCTGGTACCTTGATGAAGGGCGTCATTCCAAGAATTGTCTTCCTTGCGCC
TCTAGCTGGAATCACTTTCTCTGTATATGAAGCTGTTGCTGCCAATATCA
AAAAGAGAAAGACCGTTGCGGAACCGGTCGCATACAACTCATTACAAGAG
GCGTTCATGACACACCTGCAACCTGGATTGAAGGAAAGGACACGTACAAC
CACTTTAGCTTTGCGTTTTTCGAAATCCAGTGTTAGACTGGTATCGGCCA
ATACTTCCTCGTATGGAATGGGTCTGGGTGATTACGATTCTCCCTCCCCG
TTCGTCTTCTCATTGTCTGTATAG
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protein sequence of Ggra5571.t1

>Ggra5571.t1 ID=Ggra5571.t1|Name=Ggra5571.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MEREGFKELRWKVATAAAAVQLTFQEKMLAGAIARGIAQTVLHPVDVMRT
RLQARNVSTSLRPGVFLKGVIPQIVLAIPAGALQFVAFESAKDKLRTLIP
DENLSQTRILLAGAVGALVAATCRIPQEVLKQPLQAEIYPNVFVALKETV
GKNGIGALYKGSIATISRDIPWNALSFMFHGQGKKMFKSTKGRDPANDEN
LVIAGVAGALAAIIMTPIDVVKTRIMTQRVGSTVYSGVIGTFSKIVREEG
AGTLMKGVIPRIVFLAPLAGITFSVYEAVAANIKKRKTVAEPVAYNSLQE
AFMTHLQPGLKERTRTTTLALRFSKSSVRLVSANTSSYGMGLGDYDSPSP
FVFSLSV*
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mRNA from alignment at tig00000842_pilon:986582..987655-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5571.t1 ID=Ggra5571.t1|Name=Ggra5571.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000842_pilon:986582..987655- (Gracilaria gracilis GNS1m male)
ATGGAACGAGAAGGTTTCAAAGAATTGCGATGGAAGGTCGCCACGGCCGC
AGCCGCCGTGCAACTCACCTTTCAGGAGAAGATGCTCGCGGGCGCTATTG
CCAGGGGCATTGCTCAGACCGTATTGCACCCGGTTGATGTCATGCGTACG
CGTCTGCAGGCGCGTAACGTCAGTACCTCGTTGAGGCCGGGCGTGTTTTT
GAAGGGAGTCATTCCGCAAATCGTGCTCGCCATCCCGGCCGGTGCGCTGC
AATTCGTCGCGTTTGAATCTGCAAAGGACAAGTTACGCACTTTGATCCCG
GATGAGAACCTTTCACAAACGCGTATTTTGCTTGCTGGTGCGGTTGGTGC
GTTGGTTGCTGCCACATGTCGTATTCCACAAGAGGTTCTCAAACAGCCGC
TTCAGGCTGAGATATATCCCAATGTGTTTGTCGCGCTCAAGGAGACCGTG
GGCAAGAATGGAATCGGTGCGCTTTACAAGGGCTCCATAGCCACCATCTC
AAGGGATATTCCGTGGAATGCGCTTTCTTTCATGTTTCACGGACAGGGGA
AGAAGATGTTCAAGTCCACCAAGGGACGTGATCCTGCCAACGATGAAAAC
CTTGTTATTGCAGGCGTCGCAGGGGCACTCGCGGCCATAATTATGACCCC
TATTGATGTCGTCAAGACGCGTATCATGACACAGCGCGTTGGATCCACGG
TGTACTCTGGTGTCATCGGTACCTTCTCAAAGATTGTTAGGGAAGAAGGC
GCTGGTACCTTGATGAAGGGCGTCATTCCAAGAATTGTCTTCCTTGCGCC
TCTAGCTGGAATCACTTTCTCTGTATATGAAGCTGTTGCTGCCAATATCA
AAAAGAGAAAGACCGTTGCGGAACCGGTCGCATACAACTCATTACAAGAG
GCGTTCATGACACACCTGCAACCTGGATTGAAGGAAAGGACACGTACAAC
CACTTTAGCTTTGCGTTTTTCGAAATCCAGTGTTAGACTGGTATCGGCCA
ATACTTCCTCGTATGGAATGGGTCTGGGTGATTACGATTCTCCCTCCCCG
TTCGTCTTCTCATTGTCTGTATAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:986582..987655-

>Ggra5571.t1 ID=Ggra5571.t1|Name=Ggra5571.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000842_pilon:986582..987655- (Gracilaria gracilis GNS1m male)
ATGGAACGAGAAGGTTTCAAAGAATTGCGATGGAAGGTCGCCACGGCCGC
AGCCGCCGTGCAACTCACCTTTCAGGAGAAGATGCTCGCGGGCGCTATTG
CCAGGGGCATTGCTCAGACCGTATTGCACCCGGTTGATGTCATGCGTACG
CGTCTGCAGGCGCGTAACGTCAGTACCTCGTTGAGGCCGGGCGTGTTTTT
GAAGGGAGTCATTCCGCAAATCGTGCTCGCCATCCCGGCCGGTGCGCTGC
AATTCGTCGCGTTTGAATCTGCAAAGGACAAGTTACGCACTTTGATCCCG
GATGAGAACCTTTCACAAACGCGTATTTTGCTTGCTGGTGCGGTTGGTGC
GTTGGTTGCTGCCACATGTCGTATTCCACAAGAGGTTCTCAAACAGCCGC
TTCAGGCTGAGATATATCCCAATGTGTTTGTCGCGCTCAAGGAGACCGTG
GGCAAGAATGGAATCGGTGCGCTTTACAAGGGCTCCATAGCCACCATCTC
AAGGGATATTCCGTGGAATGCGCTTTCTTTCATGTTTCACGGACAGGGGA
AGAAGATGTTCAAGTCCACCAAGGGACGTGATCCTGCCAACGATGAAAAC
CTTGTTATTGCAGGCGTCGCAGGGGCACTCGCGGCCATAATTATGACCCC
TATTGATGTCGTCAAGACGCGTATCATGACACAGCGCGTTGGATCCACGG
TGTACTCTGGTGTCATCGGTACCTTCTCAAAGATTGTTAGGGAAGAAGGC
GCTGGTACCTTGATGAAGGGCGTCATTCCAAGAATTGTCTTCCTTGCGCC
TCTAGCTGGAATCACTTTCTCTGTATATGAAGCTGTTGCTGCCAATATCA
AAAAGAGAAAGACCGTTGCGGAACCGGTCGCATACAACTCATTACAAGAG
GCGTTCATGACACACCTGCAACCTGGATTGAAGGAAAGGACACGTACAAC
CACTTTAGCTTTGCGTTTTTCGAAATCCAGTGTTAGACTGGTATCGGCCA
ATACTTCCTCGTATGGAATGGGTCTGGGTGATTACGATTCTCCCTCCCCG
TTCGTCTTCTCATTGTCTGTATAG
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