Ggra5565.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5565.t1
Unique NameGgra5565.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length544
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:962373..964004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5565Ggra5565Gracilaria gracilis GNS1m malegenetig00000842_pilon 962373..964004 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5565.t1.stop1Ggra5565.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 962373..962375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5565.t1.CDS1Ggra5565.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 962373..964004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5565.t1.exon1Ggra5565.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 962373..964004 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5565.t1.start1Ggra5565.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 964002..964004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5565.t1Ggra5565.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 962373..964004 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5565.t1 ID=Ggra5565.t1|Name=Ggra5565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=544bp
MAYELPIYPTHSEAQALASLATNPSSEPLSGIQYFHELLRVLRDPSCSRF
LFAGDPIELQHLVHPQLPQFAVTNEMSETSVEPNSSPQDSLSDHWSSRHF
TFPAYSSDGKTFGFVVSKDIYIPGSAWGLEPTKVETLTTSRFVKHDEEGY
TVLVANYAEFNAYRLEYSKMITNTRQVRFIVAVDANIFQGLLLRGSLFVK
DMMAALLFMQMSTEHRKCPDCRLSADECFCEAPVVKPRHPFDYEAFRKCT
LGSGGVFEGRTTVALFAAGVKIRGGALGCLFVSRPKFDFDLVEGLRRLAI
TKHVGGETARHSNLKLFADAARNMRQAYIRNRVTSSSEAALGGLLLSDVG
TVSQTLNLATEPVAVNSLLPLVGEEEGNLESVDMNITPSLIDTLLVPSVQ
SGTFGGAMNISEEDVVGTQAVDVVTPDAEDAFGSHEHTSRTEEFLAGDVE
SVETDSLSIRKNNEEKVNADDRIRRLKVELRKERNRACAQRSNMRKKVMM
DALKNDIKTTREKADLLRSQEMLLRRQNIFLKKQVADKYVAGR*
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spliced messenger RNA

>Ggra5565.t1 ID=Ggra5565.t1|Name=Ggra5565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000842_pilon:962373..964004- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTACGAGCTTCCTATATATCCCACTCACTCTGAAGCTCAGGCTCT
CGCGTCCCTTGCAACAAACCCAAGCTCTGAACCCCTCAGCGGTATCCAAT
ACTTTCATGAATTGCTTCGTGTCCTTCGAGACCCGTCATGTTCAAGGTTT
CTGTTCGCAGGCGACCCAATTGAGCTTCAACACCTCGTTCACCCGCAGCT
TCCGCAATTCGCTGTGACAAACGAGATGTCCGAAACTAGTGTAGAGCCCA
ACTCCAGCCCGCAAGATTCTCTATCCGACCATTGGAGCAGCCGTCATTTT
ACATTTCCTGCGTATAGTTCTGATGGGAAGACATTTGGGTTCGTTGTTTC
GAAGGACATTTATATTCCTGGATCAGCATGGGGGCTTGAACCAACTAAAG
TGGAAACCTTGACCACATCACGATTTGTCAAACATGACGAAGAAGGTTAC
ACTGTACTAGTTGCCAACTACGCGGAATTCAATGCGTATCGTCTCGAGTA
CTCAAAGATGATTACAAACACCCGACAAGTGAGATTTATCGTTGCTGTGG
ATGCCAACATTTTCCAGGGTCTTCTTCTACGAGGTTCTCTGTTCGTGAAG
GACATGATGGCTGCTTTGCTGTTCATGCAAATGTCTACCGAGCATCGCAA
ATGCCCAGATTGCCGGCTCTCTGCGGATGAGTGCTTTTGCGAGGCACCAG
TCGTGAAACCCAGACATCCGTTCGACTACGAAGCCTTCCGAAAATGTACA
CTGGGTAGCGGAGGCGTATTCGAAGGGAGAACAACAGTGGCTTTGTTTGC
AGCTGGTGTGAAGATCAGAGGTGGTGCACTTGGGTGCCTGTTTGTGTCAC
GTCCTAAGTTTGACTTTGATCTTGTAGAGGGATTGAGGCGATTAGCAATC
ACTAAGCACGTAGGTGGAGAAACTGCCCGACATTCTAATTTGAAGCTTTT
TGCCGACGCTGCGAGGAATATGCGACAAGCTTATATTAGGAATAGAGTTA
CTTCATCGTCAGAAGCTGCTTTGGGGGGCTTATTACTGAGCGATGTTGGT
ACAGTTTCACAAACTCTTAACCTTGCCACTGAGCCTGTCGCAGTCAACTC
TTTGTTACCGCTAGTAGGAGAAGAGGAAGGAAACCTGGAATCCGTCGATA
TGAATATAACTCCCTCTCTAATAGACACTCTTCTAGTGCCATCTGTGCAG
TCTGGGACATTTGGAGGAGCAATGAATATATCTGAGGAAGATGTAGTAGG
TACCCAAGCAGTGGATGTGGTCACACCAGATGCTGAAGATGCGTTCGGTT
CTCATGAACATACTAGCCGTACAGAAGAATTTCTTGCTGGTGACGTGGAA
TCCGTTGAAACAGATTCTCTGTCAATTCGTAAGAACAATGAAGAAAAAGT
TAACGCTGATGATCGAATTAGGCGCCTCAAGGTAGAACTACGAAAGGAAA
GAAACCGTGCCTGTGCCCAGCGAAGCAATATGAGAAAAAAGGTCATGATG
GATGCTCTGAAAAATGATATTAAAACGACTAGGGAGAAAGCGGACTTGCT
ACGTTCTCAAGAAATGCTGCTTCGCCGGCAGAACATCTTCCTCAAGAAAC
AAGTGGCCGATAAGTATGTTGCAGGACGCTAG
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protein sequence of Ggra5565.t1

>Ggra5565.t1 ID=Ggra5565.t1|Name=Ggra5565.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=544bp
MAYELPIYPTHSEAQALASLATNPSSEPLSGIQYFHELLRVLRDPSCSRF
LFAGDPIELQHLVHPQLPQFAVTNEMSETSVEPNSSPQDSLSDHWSSRHF
TFPAYSSDGKTFGFVVSKDIYIPGSAWGLEPTKVETLTTSRFVKHDEEGY
TVLVANYAEFNAYRLEYSKMITNTRQVRFIVAVDANIFQGLLLRGSLFVK
DMMAALLFMQMSTEHRKCPDCRLSADECFCEAPVVKPRHPFDYEAFRKCT
LGSGGVFEGRTTVALFAAGVKIRGGALGCLFVSRPKFDFDLVEGLRRLAI
TKHVGGETARHSNLKLFADAARNMRQAYIRNRVTSSSEAALGGLLLSDVG
TVSQTLNLATEPVAVNSLLPLVGEEEGNLESVDMNITPSLIDTLLVPSVQ
SGTFGGAMNISEEDVVGTQAVDVVTPDAEDAFGSHEHTSRTEEFLAGDVE
SVETDSLSIRKNNEEKVNADDRIRRLKVELRKERNRACAQRSNMRKKVMM
DALKNDIKTTREKADLLRSQEMLLRRQNIFLKKQVADKYVAGR*
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mRNA from alignment at tig00000842_pilon:962373..964004-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5565.t1 ID=Ggra5565.t1|Name=Ggra5565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000842_pilon:962373..964004- (Gracilaria gracilis GNS1m male)
ATGGCTTACGAGCTTCCTATATATCCCACTCACTCTGAAGCTCAGGCTCT
CGCGTCCCTTGCAACAAACCCAAGCTCTGAACCCCTCAGCGGTATCCAAT
ACTTTCATGAATTGCTTCGTGTCCTTCGAGACCCGTCATGTTCAAGGTTT
CTGTTCGCAGGCGACCCAATTGAGCTTCAACACCTCGTTCACCCGCAGCT
TCCGCAATTCGCTGTGACAAACGAGATGTCCGAAACTAGTGTAGAGCCCA
ACTCCAGCCCGCAAGATTCTCTATCCGACCATTGGAGCAGCCGTCATTTT
ACATTTCCTGCGTATAGTTCTGATGGGAAGACATTTGGGTTCGTTGTTTC
GAAGGACATTTATATTCCTGGATCAGCATGGGGGCTTGAACCAACTAAAG
TGGAAACCTTGACCACATCACGATTTGTCAAACATGACGAAGAAGGTTAC
ACTGTACTAGTTGCCAACTACGCGGAATTCAATGCGTATCGTCTCGAGTA
CTCAAAGATGATTACAAACACCCGACAAGTGAGATTTATCGTTGCTGTGG
ATGCCAACATTTTCCAGGGTCTTCTTCTACGAGGTTCTCTGTTCGTGAAG
GACATGATGGCTGCTTTGCTGTTCATGCAAATGTCTACCGAGCATCGCAA
ATGCCCAGATTGCCGGCTCTCTGCGGATGAGTGCTTTTGCGAGGCACCAG
TCGTGAAACCCAGACATCCGTTCGACTACGAAGCCTTCCGAAAATGTACA
CTGGGTAGCGGAGGCGTATTCGAAGGGAGAACAACAGTGGCTTTGTTTGC
AGCTGGTGTGAAGATCAGAGGTGGTGCACTTGGGTGCCTGTTTGTGTCAC
GTCCTAAGTTTGACTTTGATCTTGTAGAGGGATTGAGGCGATTAGCAATC
ACTAAGCACGTAGGTGGAGAAACTGCCCGACATTCTAATTTGAAGCTTTT
TGCCGACGCTGCGAGGAATATGCGACAAGCTTATATTAGGAATAGAGTTA
CTTCATCGTCAGAAGCTGCTTTGGGGGGCTTATTACTGAGCGATGTTGGT
ACAGTTTCACAAACTCTTAACCTTGCCACTGAGCCTGTCGCAGTCAACTC
TTTGTTACCGCTAGTAGGAGAAGAGGAAGGAAACCTGGAATCCGTCGATA
TGAATATAACTCCCTCTCTAATAGACACTCTTCTAGTGCCATCTGTGCAG
TCTGGGACATTTGGAGGAGCAATGAATATATCTGAGGAAGATGTAGTAGG
TACCCAAGCAGTGGATGTGGTCACACCAGATGCTGAAGATGCGTTCGGTT
CTCATGAACATACTAGCCGTACAGAAGAATTTCTTGCTGGTGACGTGGAA
TCCGTTGAAACAGATTCTCTGTCAATTCGTAAGAACAATGAAGAAAAAGT
TAACGCTGATGATCGAATTAGGCGCCTCAAGGTAGAACTACGAAAGGAAA
GAAACCGTGCCTGTGCCCAGCGAAGCAATATGAGAAAAAAGGTCATGATG
GATGCTCTGAAAAATGATATTAAAACGACTAGGGAGAAAGCGGACTTGCT
ACGTTCTCAAGAAATGCTGCTTCGCCGGCAGAACATCTTCCTCAAGAAAC
AAGTGGCCGATAAGTATGTTGCAGGACGCTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:962373..964004-

>Ggra5565.t1 ID=Ggra5565.t1|Name=Ggra5565.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1632bp|location=Sequence derived from alignment at tig00000842_pilon:962373..964004- (Gracilaria gracilis GNS1m male)
ATGGCTTACGAGCTTCCTATATATCCCACTCACTCTGAAGCTCAGGCTCT
CGCGTCCCTTGCAACAAACCCAAGCTCTGAACCCCTCAGCGGTATCCAAT
ACTTTCATGAATTGCTTCGTGTCCTTCGAGACCCGTCATGTTCAAGGTTT
CTGTTCGCAGGCGACCCAATTGAGCTTCAACACCTCGTTCACCCGCAGCT
TCCGCAATTCGCTGTGACAAACGAGATGTCCGAAACTAGTGTAGAGCCCA
ACTCCAGCCCGCAAGATTCTCTATCCGACCATTGGAGCAGCCGTCATTTT
ACATTTCCTGCGTATAGTTCTGATGGGAAGACATTTGGGTTCGTTGTTTC
GAAGGACATTTATATTCCTGGATCAGCATGGGGGCTTGAACCAACTAAAG
TGGAAACCTTGACCACATCACGATTTGTCAAACATGACGAAGAAGGTTAC
ACTGTACTAGTTGCCAACTACGCGGAATTCAATGCGTATCGTCTCGAGTA
CTCAAAGATGATTACAAACACCCGACAAGTGAGATTTATCGTTGCTGTGG
ATGCCAACATTTTCCAGGGTCTTCTTCTACGAGGTTCTCTGTTCGTGAAG
GACATGATGGCTGCTTTGCTGTTCATGCAAATGTCTACCGAGCATCGCAA
ATGCCCAGATTGCCGGCTCTCTGCGGATGAGTGCTTTTGCGAGGCACCAG
TCGTGAAACCCAGACATCCGTTCGACTACGAAGCCTTCCGAAAATGTACA
CTGGGTAGCGGAGGCGTATTCGAAGGGAGAACAACAGTGGCTTTGTTTGC
AGCTGGTGTGAAGATCAGAGGTGGTGCACTTGGGTGCCTGTTTGTGTCAC
GTCCTAAGTTTGACTTTGATCTTGTAGAGGGATTGAGGCGATTAGCAATC
ACTAAGCACGTAGGTGGAGAAACTGCCCGACATTCTAATTTGAAGCTTTT
TGCCGACGCTGCGAGGAATATGCGACAAGCTTATATTAGGAATAGAGTTA
CTTCATCGTCAGAAGCTGCTTTGGGGGGCTTATTACTGAGCGATGTTGGT
ACAGTTTCACAAACTCTTAACCTTGCCACTGAGCCTGTCGCAGTCAACTC
TTTGTTACCGCTAGTAGGAGAAGAGGAAGGAAACCTGGAATCCGTCGATA
TGAATATAACTCCCTCTCTAATAGACACTCTTCTAGTGCCATCTGTGCAG
TCTGGGACATTTGGAGGAGCAATGAATATATCTGAGGAAGATGTAGTAGG
TACCCAAGCAGTGGATGTGGTCACACCAGATGCTGAAGATGCGTTCGGTT
CTCATGAACATACTAGCCGTACAGAAGAATTTCTTGCTGGTGACGTGGAA
TCCGTTGAAACAGATTCTCTGTCAATTCGTAAGAACAATGAAGAAAAAGT
TAACGCTGATGATCGAATTAGGCGCCTCAAGGTAGAACTACGAAAGGAAA
GAAACCGTGCCTGTGCCCAGCGAAGCAATATGAGAAAAAAGGTCATGATG
GATGCTCTGAAAAATGATATTAAAACGACTAGGGAGAAAGCGGACTTGCT
ACGTTCTCAAGAAATGCTGCTTCGCCGGCAGAACATCTTCCTCAAGAAAC
AAGTGGCCGATAAGTATGTTGCAGGACGCTAG
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