Ggra5560.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5560.t1
Unique NameGgra5560.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length535
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:931794..933398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G4N1
PFAMsGTP-bdg_M,GTP-bdg_N,MMR_HSR1,TMEM141
Max annot lvl2759|Eukaryota
KEGG koko:K03665
GOsGO:0000226,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0034622,GO:0035082,GO:0036158,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Evalue1.51e-141
EggNOG OGsCOG2262@1|root,KOG0410@2759|Eukaryota
Descriptionribosome binding
COG categoryO
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5560Ggra5560Gracilaria gracilis GNS1m malegenetig00000842_pilon 931794..933398 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5560.t1.start1Ggra5560.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 931794..931796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5560.t1.CDS1Ggra5560.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 931794..933398 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5560.t1.exon1Ggra5560.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 931794..933398 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5560.t1.stop1Ggra5560.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 933396..933398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5560.t1Ggra5560.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 931794..933398 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5560.t1 ID=Ggra5560.t1|Name=Ggra5560.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=535bp
MDSQLSFVSSFTAKPTTLPRNQSRCTRQPLRLKHHAARRSALMTIKPSET
SEERYSLRVRREEDRELCVLVGVDATDKFRHTRLFSIDDSLQELTRLAET
AGMRVVSVVTQQLPVPYASTYIGTGKLNQVRKEMESLGCCTCIFDVELSP
AQQRTLEHEFGGEERGIKVLDRTALILDIFAQHAATREGQLQVELALYQY
RLPRLTRMWTHLERQSGAGGVGLRGPGETQLEVDRRMINTKVNKLKKDLE
LVRAHRSRVRQARKRNIGLPVVALIGYTNGGKSSMLNALSGADALAANAL
FATLDPTTRRASVAGLKLSPEILVTDTVGFVQNLPTQLVAAFRATLEEVV
DADMLLHVVDASDEQGVMQRKMEAVERVLEEIGAGGKPTVIVLNKADLVA
DDEVERLKVEIESRSVFECVRVSAKTGKGVDEMGMVIDEVLRDTMRSVEV
VIPYDRGDLTTDIYVQGSVEAEEFVKDGTLMQARVPVALCNRLRAFMVGG
GAEDEVDEETMWVDLAKKRHSPRKASSVSVRETA*
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spliced messenger RNA

>Ggra5560.t1 ID=Ggra5560.t1|Name=Ggra5560.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000842_pilon:931794..933398+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCTCAACTCTCGTTCGTTAGTTCGTTCACAGCCAAACCAACCAC
TCTGCCCCGTAATCAGTCGAGGTGCACCCGACAACCTCTGCGTCTCAAGC
ACCATGCCGCCCGCCGAAGCGCGTTGATGACCATCAAGCCTTCTGAGACA
TCGGAGGAACGATATTCGCTTCGAGTGCGCCGCGAAGAGGACCGTGAGCT
CTGCGTTCTGGTCGGTGTTGACGCGACAGACAAATTCCGTCACACACGTC
TCTTTTCTATCGACGACTCCTTGCAAGAGCTCACTCGCTTGGCAGAAACA
GCTGGAATGCGCGTGGTTTCTGTCGTCACACAGCAACTCCCCGTCCCGTA
CGCCTCCACCTACATTGGTACGGGAAAACTCAACCAAGTACGGAAGGAAA
TGGAGAGTTTAGGCTGCTGCACTTGCATATTCGATGTTGAACTATCACCT
GCACAGCAGCGTACATTAGAACACGAATTCGGCGGAGAGGAACGTGGCAT
TAAAGTTCTTGACCGCACAGCGCTAATTCTGGACATATTCGCGCAACACG
CGGCTACGCGTGAGGGACAGCTGCAAGTGGAACTGGCGCTGTATCAGTAC
CGCCTACCCCGATTGACGCGCATGTGGACACATCTGGAGCGTCAGTCTGG
CGCTGGTGGCGTCGGCTTGCGTGGTCCCGGAGAGACCCAGCTTGAAGTGG
ACAGGCGAATGATAAACACAAAGGTGAACAAACTGAAGAAGGACCTGGAG
TTAGTGCGCGCACACAGATCACGGGTGAGACAAGCGCGCAAAAGAAACAT
AGGTTTGCCGGTGGTGGCTCTGATCGGCTACACAAATGGCGGCAAAAGCT
CCATGCTGAATGCGCTGAGTGGGGCGGACGCTCTCGCGGCGAATGCGCTG
TTTGCCACATTGGACCCGACGACCCGACGCGCCAGTGTGGCGGGTTTAAA
GCTGAGCCCTGAGATCTTGGTGACGGACACAGTGGGATTCGTGCAGAACT
TGCCCACGCAGCTTGTGGCTGCGTTTCGCGCGACGTTGGAGGAGGTTGTA
GACGCGGACATGCTTCTGCACGTGGTGGATGCGTCGGACGAACAGGGGGT
GATGCAGCGGAAGATGGAGGCGGTTGAAAGAGTGTTGGAGGAGATTGGCG
CCGGCGGAAAGCCGACGGTGATCGTGTTGAACAAGGCGGATTTGGTGGCG
GACGACGAGGTGGAGCGTCTGAAAGTGGAGATTGAGAGCCGCAGCGTGTT
CGAGTGCGTGAGGGTGAGCGCGAAGACGGGCAAGGGCGTGGATGAGATGG
GGATGGTGATCGACGAGGTTCTGCGCGACACGATGCGCAGCGTGGAGGTG
GTGATCCCGTACGACCGCGGCGACTTGACGACGGACATCTATGTACAGGG
CAGCGTGGAGGCGGAGGAGTTCGTCAAGGACGGTACGTTGATGCAGGCTC
GCGTGCCGGTGGCGTTGTGCAACCGGCTGAGGGCGTTCATGGTGGGCGGC
GGCGCAGAGGACGAGGTGGACGAGGAGACGATGTGGGTGGACTTAGCGAA
GAAGCGCCACAGCCCAAGAAAAGCGAGCTCCGTCAGCGTACGCGAAACGG
CTTAG
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protein sequence of Ggra5560.t1

>Ggra5560.t1 ID=Ggra5560.t1|Name=Ggra5560.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=535bp
MDSQLSFVSSFTAKPTTLPRNQSRCTRQPLRLKHHAARRSALMTIKPSET
SEERYSLRVRREEDRELCVLVGVDATDKFRHTRLFSIDDSLQELTRLAET
AGMRVVSVVTQQLPVPYASTYIGTGKLNQVRKEMESLGCCTCIFDVELSP
AQQRTLEHEFGGEERGIKVLDRTALILDIFAQHAATREGQLQVELALYQY
RLPRLTRMWTHLERQSGAGGVGLRGPGETQLEVDRRMINTKVNKLKKDLE
LVRAHRSRVRQARKRNIGLPVVALIGYTNGGKSSMLNALSGADALAANAL
FATLDPTTRRASVAGLKLSPEILVTDTVGFVQNLPTQLVAAFRATLEEVV
DADMLLHVVDASDEQGVMQRKMEAVERVLEEIGAGGKPTVIVLNKADLVA
DDEVERLKVEIESRSVFECVRVSAKTGKGVDEMGMVIDEVLRDTMRSVEV
VIPYDRGDLTTDIYVQGSVEAEEFVKDGTLMQARVPVALCNRLRAFMVGG
GAEDEVDEETMWVDLAKKRHSPRKASSVSVRETA*
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mRNA from alignment at tig00000842_pilon:931794..933398+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5560.t1 ID=Ggra5560.t1|Name=Ggra5560.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000842_pilon:931794..933398+ (Gracilaria gracilis GNS1m male)
ATGGACTCTCAACTCTCGTTCGTTAGTTCGTTCACAGCCAAACCAACCAC
TCTGCCCCGTAATCAGTCGAGGTGCACCCGACAACCTCTGCGTCTCAAGC
ACCATGCCGCCCGCCGAAGCGCGTTGATGACCATCAAGCCTTCTGAGACA
TCGGAGGAACGATATTCGCTTCGAGTGCGCCGCGAAGAGGACCGTGAGCT
CTGCGTTCTGGTCGGTGTTGACGCGACAGACAAATTCCGTCACACACGTC
TCTTTTCTATCGACGACTCCTTGCAAGAGCTCACTCGCTTGGCAGAAACA
GCTGGAATGCGCGTGGTTTCTGTCGTCACACAGCAACTCCCCGTCCCGTA
CGCCTCCACCTACATTGGTACGGGAAAACTCAACCAAGTACGGAAGGAAA
TGGAGAGTTTAGGCTGCTGCACTTGCATATTCGATGTTGAACTATCACCT
GCACAGCAGCGTACATTAGAACACGAATTCGGCGGAGAGGAACGTGGCAT
TAAAGTTCTTGACCGCACAGCGCTAATTCTGGACATATTCGCGCAACACG
CGGCTACGCGTGAGGGACAGCTGCAAGTGGAACTGGCGCTGTATCAGTAC
CGCCTACCCCGATTGACGCGCATGTGGACACATCTGGAGCGTCAGTCTGG
CGCTGGTGGCGTCGGCTTGCGTGGTCCCGGAGAGACCCAGCTTGAAGTGG
ACAGGCGAATGATAAACACAAAGGTGAACAAACTGAAGAAGGACCTGGAG
TTAGTGCGCGCACACAGATCACGGGTGAGACAAGCGCGCAAAAGAAACAT
AGGTTTGCCGGTGGTGGCTCTGATCGGCTACACAAATGGCGGCAAAAGCT
CCATGCTGAATGCGCTGAGTGGGGCGGACGCTCTCGCGGCGAATGCGCTG
TTTGCCACATTGGACCCGACGACCCGACGCGCCAGTGTGGCGGGTTTAAA
GCTGAGCCCTGAGATCTTGGTGACGGACACAGTGGGATTCGTGCAGAACT
TGCCCACGCAGCTTGTGGCTGCGTTTCGCGCGACGTTGGAGGAGGTTGTA
GACGCGGACATGCTTCTGCACGTGGTGGATGCGTCGGACGAACAGGGGGT
GATGCAGCGGAAGATGGAGGCGGTTGAAAGAGTGTTGGAGGAGATTGGCG
CCGGCGGAAAGCCGACGGTGATCGTGTTGAACAAGGCGGATTTGGTGGCG
GACGACGAGGTGGAGCGTCTGAAAGTGGAGATTGAGAGCCGCAGCGTGTT
CGAGTGCGTGAGGGTGAGCGCGAAGACGGGCAAGGGCGTGGATGAGATGG
GGATGGTGATCGACGAGGTTCTGCGCGACACGATGCGCAGCGTGGAGGTG
GTGATCCCGTACGACCGCGGCGACTTGACGACGGACATCTATGTACAGGG
CAGCGTGGAGGCGGAGGAGTTCGTCAAGGACGGTACGTTGATGCAGGCTC
GCGTGCCGGTGGCGTTGTGCAACCGGCTGAGGGCGTTCATGGTGGGCGGC
GGCGCAGAGGACGAGGTGGACGAGGAGACGATGTGGGTGGACTTAGCGAA
GAAGCGCCACAGCCCAAGAAAAGCGAGCTCCGTCAGCGTACGCGAAACGG
CTTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:931794..933398+

>Ggra5560.t1 ID=Ggra5560.t1|Name=Ggra5560.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1605bp|location=Sequence derived from alignment at tig00000842_pilon:931794..933398+ (Gracilaria gracilis GNS1m male)
ATGGACTCTCAACTCTCGTTCGTTAGTTCGTTCACAGCCAAACCAACCAC
TCTGCCCCGTAATCAGTCGAGGTGCACCCGACAACCTCTGCGTCTCAAGC
ACCATGCCGCCCGCCGAAGCGCGTTGATGACCATCAAGCCTTCTGAGACA
TCGGAGGAACGATATTCGCTTCGAGTGCGCCGCGAAGAGGACCGTGAGCT
CTGCGTTCTGGTCGGTGTTGACGCGACAGACAAATTCCGTCACACACGTC
TCTTTTCTATCGACGACTCCTTGCAAGAGCTCACTCGCTTGGCAGAAACA
GCTGGAATGCGCGTGGTTTCTGTCGTCACACAGCAACTCCCCGTCCCGTA
CGCCTCCACCTACATTGGTACGGGAAAACTCAACCAAGTACGGAAGGAAA
TGGAGAGTTTAGGCTGCTGCACTTGCATATTCGATGTTGAACTATCACCT
GCACAGCAGCGTACATTAGAACACGAATTCGGCGGAGAGGAACGTGGCAT
TAAAGTTCTTGACCGCACAGCGCTAATTCTGGACATATTCGCGCAACACG
CGGCTACGCGTGAGGGACAGCTGCAAGTGGAACTGGCGCTGTATCAGTAC
CGCCTACCCCGATTGACGCGCATGTGGACACATCTGGAGCGTCAGTCTGG
CGCTGGTGGCGTCGGCTTGCGTGGTCCCGGAGAGACCCAGCTTGAAGTGG
ACAGGCGAATGATAAACACAAAGGTGAACAAACTGAAGAAGGACCTGGAG
TTAGTGCGCGCACACAGATCACGGGTGAGACAAGCGCGCAAAAGAAACAT
AGGTTTGCCGGTGGTGGCTCTGATCGGCTACACAAATGGCGGCAAAAGCT
CCATGCTGAATGCGCTGAGTGGGGCGGACGCTCTCGCGGCGAATGCGCTG
TTTGCCACATTGGACCCGACGACCCGACGCGCCAGTGTGGCGGGTTTAAA
GCTGAGCCCTGAGATCTTGGTGACGGACACAGTGGGATTCGTGCAGAACT
TGCCCACGCAGCTTGTGGCTGCGTTTCGCGCGACGTTGGAGGAGGTTGTA
GACGCGGACATGCTTCTGCACGTGGTGGATGCGTCGGACGAACAGGGGGT
GATGCAGCGGAAGATGGAGGCGGTTGAAAGAGTGTTGGAGGAGATTGGCG
CCGGCGGAAAGCCGACGGTGATCGTGTTGAACAAGGCGGATTTGGTGGCG
GACGACGAGGTGGAGCGTCTGAAAGTGGAGATTGAGAGCCGCAGCGTGTT
CGAGTGCGTGAGGGTGAGCGCGAAGACGGGCAAGGGCGTGGATGAGATGG
GGATGGTGATCGACGAGGTTCTGCGCGACACGATGCGCAGCGTGGAGGTG
GTGATCCCGTACGACCGCGGCGACTTGACGACGGACATCTATGTACAGGG
CAGCGTGGAGGCGGAGGAGTTCGTCAAGGACGGTACGTTGATGCAGGCTC
GCGTGCCGGTGGCGTTGTGCAACCGGCTGAGGGCGTTCATGGTGGGCGGC
GGCGCAGAGGACGAGGTGGACGAGGAGACGATGTGGGTGGACTTAGCGAA
GAAGCGCCACAGCCCAAGAAAAGCGAGCTCCGTCAGCGTACGCGAAACGG
CTTAG
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