Ggra5557.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5557.t1
Unique Name	Ggra5557.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:928783..929619 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3656.XP_008448354.1
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0052751,GO:0060359,GO:0070887,GO:0071242,GO:1901698,GO:1901699
Evalue	5.84e-26
EggNOG OGs	28JDX@1\|root,2QRSW@2759\|Eukaryota,37P03@33090\|Viridiplantae,3GEJ0@35493\|Streptophyta,4JEME@91835\|fabids
Description	Nudix hydrolase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5557	Ggra5557	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 928783..929619 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5557.t1.stop1	Ggra5557.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 928783..928785 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5557.t1.CDS1	Ggra5557.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 928783..929619 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5557.t1.exon1	Ggra5557.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 928783..929619 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5557.t1.start1	Ggra5557.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 929617..929619 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5557.t1	Ggra5557.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 928783..929619 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:928783..929619-
coding sequence from alignment at tig00000842_pilon:928783..929619-

mRNA sequence

>Ggra5557.t1 ID=Ggra5557.t1|Name=Ggra5557.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=279bp
MDTEVGYEVIVPFAPGRRFSVSFSVENNRKPSETSALEHSIEATWSKRLV
ENKTLFNGSKFRLAGVSKSAEHITLHLGLTDYKTYLATHAPPQPLRRFGS
ECMALPLGNVLVPVTQDGFTFILIRSGNSAEGKFKCVFPGGHAEPSEIAH
MTYGNCPMIRHELVVSARREAIEELFLDEDLVETADEMVFLGIVRRTSDW
KPSLIFSARLFCDASEIEEKYREGNELQEESVKLIRCPVRCILDSGIESL
LPAGYDAMPELLGAAELFHKWSEHRLNV*

spliced messenger RNA

>Ggra5557.t1 ID=Ggra5557.t1|Name=Ggra5557.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000842_pilon:928783..929619- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACCGAAGTTGGCTATGAAGTAATTGTACCATTTGCCCCAGGTCG
TCGATTCTCGGTTTCTTTTTCTGTTGAGAACAATAGGAAACCGTCAGAAA
CCTCAGCACTGGAGCACAGCATTGAAGCAACATGGTCCAAACGCCTTGTA
GAAAACAAAACCCTTTTCAATGGCTCCAAGTTTCGATTAGCAGGTGTTTC
CAAGTCTGCTGAACATATCACGTTACATCTAGGGCTGACGGACTACAAAA
CGTATCTTGCGACACATGCACCCCCACAGCCTCTACGAAGATTCGGTTCG
GAGTGCATGGCTTTGCCTCTTGGAAACGTCTTGGTGCCCGTTACTCAAGA
TGGTTTTACCTTCATTTTGATCAGATCGGGAAATTCTGCGGAAGGGAAGT
TCAAATGCGTTTTTCCAGGAGGTCATGCTGAACCAAGTGAAATCGCTCAC
ATGACATACGGCAACTGCCCGATGATCCGACATGAACTAGTTGTCTCCGC
TCGACGTGAGGCCATAGAGGAGTTATTCCTAGATGAAGACCTAGTGGAAA
CCGCTGATGAAATGGTATTTCTTGGCATTGTGAGAAGAACCTCAGATTGG
AAACCTAGCCTGATCTTCTCTGCTCGTTTGTTCTGCGATGCTTCTGAGAT
TGAAGAGAAGTATCGGGAAGGAAACGAATTGCAAGAAGAATCCGTGAAGC
TCATTAGATGCCCCGTTCGCTGCATTCTTGATTCAGGTATAGAGTCTCTC
CTTCCTGCTGGTTACGACGCAATGCCAGAGCTGCTTGGTGCTGCCGAGCT
ATTTCACAAATGGAGCGAACATCGACTGAACGTATGA

protein sequence of Ggra5557.t1

>Ggra5557.t1 ID=Ggra5557.t1|Name=Ggra5557.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=279bp
MDTEVGYEVIVPFAPGRRFSVSFSVENNRKPSETSALEHSIEATWSKRLV
ENKTLFNGSKFRLAGVSKSAEHITLHLGLTDYKTYLATHAPPQPLRRFGS
ECMALPLGNVLVPVTQDGFTFILIRSGNSAEGKFKCVFPGGHAEPSEIAH
MTYGNCPMIRHELVVSARREAIEELFLDEDLVETADEMVFLGIVRRTSDW
KPSLIFSARLFCDASEIEEKYREGNELQEESVKLIRCPVRCILDSGIESL
LPAGYDAMPELLGAAELFHKWSEHRLNV*

mRNA from alignment at tig00000842_pilon:928783..929619-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5557.t1 ID=Ggra5557.t1|Name=Ggra5557.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000842_pilon:928783..929619- (Gracilaria gracilis GNS1m male)
ATGGATACCGAAGTTGGCTATGAAGTAATTGTACCATTTGCCCCAGGTCG
TCGATTCTCGGTTTCTTTTTCTGTTGAGAACAATAGGAAACCGTCAGAAA
CCTCAGCACTGGAGCACAGCATTGAAGCAACATGGTCCAAACGCCTTGTA
GAAAACAAAACCCTTTTCAATGGCTCCAAGTTTCGATTAGCAGGTGTTTC
CAAGTCTGCTGAACATATCACGTTACATCTAGGGCTGACGGACTACAAAA
CGTATCTTGCGACACATGCACCCCCACAGCCTCTACGAAGATTCGGTTCG
GAGTGCATGGCTTTGCCTCTTGGAAACGTCTTGGTGCCCGTTACTCAAGA
TGGTTTTACCTTCATTTTGATCAGATCGGGAAATTCTGCGGAAGGGAAGT
TCAAATGCGTTTTTCCAGGAGGTCATGCTGAACCAAGTGAAATCGCTCAC
ATGACATACGGCAACTGCCCGATGATCCGACATGAACTAGTTGTCTCCGC
TCGACGTGAGGCCATAGAGGAGTTATTCCTAGATGAAGACCTAGTGGAAA
CCGCTGATGAAATGGTATTTCTTGGCATTGTGAGAAGAACCTCAGATTGG
AAACCTAGCCTGATCTTCTCTGCTCGTTTGTTCTGCGATGCTTCTGAGAT
TGAAGAGAAGTATCGGGAAGGAAACGAATTGCAAGAAGAATCCGTGAAGC
TCATTAGATGCCCCGTTCGCTGCATTCTTGATTCAGGTATAGAGTCTCTC
CTTCCTGCTGGTTACGACGCAATGCCAGAGCTGCTTGGTGCTGCCGAGCT
ATTTCACAAATGGAGCGAACATCGACTGAACGTATGA

Coding sequence (CDS) from alignment at tig00000842_pilon:928783..929619-

>Ggra5557.t1 ID=Ggra5557.t1|Name=Ggra5557.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000842_pilon:928783..929619- (Gracilaria gracilis GNS1m male)
ATGGATACCGAAGTTGGCTATGAAGTAATTGTACCATTTGCCCCAGGTCG
TCGATTCTCGGTTTCTTTTTCTGTTGAGAACAATAGGAAACCGTCAGAAA
CCTCAGCACTGGAGCACAGCATTGAAGCAACATGGTCCAAACGCCTTGTA
GAAAACAAAACCCTTTTCAATGGCTCCAAGTTTCGATTAGCAGGTGTTTC
CAAGTCTGCTGAACATATCACGTTACATCTAGGGCTGACGGACTACAAAA
CGTATCTTGCGACACATGCACCCCCACAGCCTCTACGAAGATTCGGTTCG
GAGTGCATGGCTTTGCCTCTTGGAAACGTCTTGGTGCCCGTTACTCAAGA
TGGTTTTACCTTCATTTTGATCAGATCGGGAAATTCTGCGGAAGGGAAGT
TCAAATGCGTTTTTCCAGGAGGTCATGCTGAACCAAGTGAAATCGCTCAC
ATGACATACGGCAACTGCCCGATGATCCGACATGAACTAGTTGTCTCCGC
TCGACGTGAGGCCATAGAGGAGTTATTCCTAGATGAAGACCTAGTGGAAA
CCGCTGATGAAATGGTATTTCTTGGCATTGTGAGAAGAACCTCAGATTGG
AAACCTAGCCTGATCTTCTCTGCTCGTTTGTTCTGCGATGCTTCTGAGAT
TGAAGAGAAGTATCGGGAAGGAAACGAATTGCAAGAAGAATCCGTGAAGC
TCATTAGATGCCCCGTTCGCTGCATTCTTGATTCAGGTATAGAGTCTCTC
CTTCCTGCTGGTTACGACGCAATGCCAGAGCTGCTTGGTGCTGCCGAGCT
ATTTCACAAATGGAGCGAACATCGACTGAACGTATGA