Ggra5550.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5550.t1
Unique NameGgra5550.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:908592..909584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003055075.1
PFAMsPro_isomerase
Max annot lvl3041|Chlorophyta
KEGG koko:K01802
Evalue4.59e-34
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota,37MAX@33090|Viridiplantae,34P72@3041|Chlorophyta
EC5.2.1.8
DescriptionPPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5550Ggra5550Gracilaria gracilis GNS1m malegenetig00000842_pilon 908592..909584 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5550.t1.stop1Ggra5550.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 908592..908594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5550.t1.CDS1Ggra5550.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 908592..909584 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5550.t1.exon1Ggra5550.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 908592..909584 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5550.t1.start1Ggra5550.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 909582..909584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5550.t1Ggra5550.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 908592..909584 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5550.t1 ID=Ggra5550.t1|Name=Ggra5550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MSRRRPTDPLTPLLDEDLESATPDVANGKQRSAAERAGRFFRTRPVSSLL
LVIALCAAAMLTFSAGRSVARMLSGRTADEKPPEHVSAIANFTEHEEEHA
PAPDEKGTLVDGSDARDAIQVAVEDRMDQKTQNERNAVSESKCYRKFEPG
KLGSARTLCVTDEFYFDISIGSTPVGRITIGVFGDVVPKSAANFRALATC
TGVFADDSLCYRQDSFHRVVTNFVAQGGSKATGRSIYGPPFQEEKSKDHH
SFLQHGERGVVSWAEYPIGSQFFILIRDEATYLDGNHVVFGIVTDGLDVL
DKIHDAPRTREEPTERITITDCGDVHKSVS*
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spliced messenger RNA

>Ggra5550.t1 ID=Ggra5550.t1|Name=Ggra5550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000842_pilon:908592..909584- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAGACGCAGACCTACAGACCCGCTAACTCCGCTGTTGGACGAGGA
CTTGGAGTCAGCCACACCCGACGTTGCCAATGGCAAACAGCGCTCTGCAG
CCGAGCGCGCCGGCCGTTTCTTCCGAACCCGCCCTGTTAGCTCGCTGTTG
CTCGTTATTGCGCTGTGCGCAGCCGCCATGCTCACCTTTTCAGCAGGGCG
CTCCGTTGCTCGCATGTTATCCGGCCGAACCGCAGATGAGAAACCGCCAG
AGCACGTCAGCGCGATTGCCAACTTCACCGAGCACGAAGAAGAGCATGCT
CCGGCACCGGACGAGAAGGGCACGCTTGTGGATGGCTCTGATGCGAGAGA
CGCCATTCAGGTAGCCGTTGAGGATCGTATGGATCAGAAGACCCAAAACG
AACGGAATGCTGTGTCGGAATCAAAGTGCTATCGCAAGTTTGAACCTGGC
AAACTAGGCTCTGCGCGAACTCTTTGCGTTACTGATGAGTTTTACTTCGA
TATATCCATCGGCAGTACACCAGTTGGGAGGATTACTATCGGCGTCTTCG
GCGATGTTGTACCAAAGAGTGCAGCAAATTTCCGCGCTCTGGCCACGTGC
ACGGGCGTGTTTGCTGATGACTCTCTCTGTTATAGACAAGATTCGTTCCA
CAGAGTCGTCACAAACTTCGTAGCCCAAGGCGGGTCGAAGGCTACTGGGC
GATCAATATATGGCCCCCCTTTCCAAGAAGAAAAGTCTAAAGATCATCAC
AGTTTCTTACAGCATGGGGAACGTGGGGTAGTGTCATGGGCCGAGTACCC
GATCGGCAGCCAGTTCTTCATCTTGATTCGTGATGAGGCCACCTATCTCG
ACGGAAATCACGTCGTCTTCGGTATCGTAACTGATGGGCTCGACGTTTTG
GACAAAATCCACGATGCCCCGCGTACAAGAGAGGAACCTACTGAGAGAAT
TACCATCACTGACTGCGGGGACGTGCACAAGTCCGTGTCATGA
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protein sequence of Ggra5550.t1

>Ggra5550.t1 ID=Ggra5550.t1|Name=Ggra5550.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MSRRRPTDPLTPLLDEDLESATPDVANGKQRSAAERAGRFFRTRPVSSLL
LVIALCAAAMLTFSAGRSVARMLSGRTADEKPPEHVSAIANFTEHEEEHA
PAPDEKGTLVDGSDARDAIQVAVEDRMDQKTQNERNAVSESKCYRKFEPG
KLGSARTLCVTDEFYFDISIGSTPVGRITIGVFGDVVPKSAANFRALATC
TGVFADDSLCYRQDSFHRVVTNFVAQGGSKATGRSIYGPPFQEEKSKDHH
SFLQHGERGVVSWAEYPIGSQFFILIRDEATYLDGNHVVFGIVTDGLDVL
DKIHDAPRTREEPTERITITDCGDVHKSVS*
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mRNA from alignment at tig00000842_pilon:908592..909584-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5550.t1 ID=Ggra5550.t1|Name=Ggra5550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000842_pilon:908592..909584- (Gracilaria gracilis GNS1m male)
ATGTCTAGACGCAGACCTACAGACCCGCTAACTCCGCTGTTGGACGAGGA
CTTGGAGTCAGCCACACCCGACGTTGCCAATGGCAAACAGCGCTCTGCAG
CCGAGCGCGCCGGCCGTTTCTTCCGAACCCGCCCTGTTAGCTCGCTGTTG
CTCGTTATTGCGCTGTGCGCAGCCGCCATGCTCACCTTTTCAGCAGGGCG
CTCCGTTGCTCGCATGTTATCCGGCCGAACCGCAGATGAGAAACCGCCAG
AGCACGTCAGCGCGATTGCCAACTTCACCGAGCACGAAGAAGAGCATGCT
CCGGCACCGGACGAGAAGGGCACGCTTGTGGATGGCTCTGATGCGAGAGA
CGCCATTCAGGTAGCCGTTGAGGATCGTATGGATCAGAAGACCCAAAACG
AACGGAATGCTGTGTCGGAATCAAAGTGCTATCGCAAGTTTGAACCTGGC
AAACTAGGCTCTGCGCGAACTCTTTGCGTTACTGATGAGTTTTACTTCGA
TATATCCATCGGCAGTACACCAGTTGGGAGGATTACTATCGGCGTCTTCG
GCGATGTTGTACCAAAGAGTGCAGCAAATTTCCGCGCTCTGGCCACGTGC
ACGGGCGTGTTTGCTGATGACTCTCTCTGTTATAGACAAGATTCGTTCCA
CAGAGTCGTCACAAACTTCGTAGCCCAAGGCGGGTCGAAGGCTACTGGGC
GATCAATATATGGCCCCCCTTTCCAAGAAGAAAAGTCTAAAGATCATCAC
AGTTTCTTACAGCATGGGGAACGTGGGGTAGTGTCATGGGCCGAGTACCC
GATCGGCAGCCAGTTCTTCATCTTGATTCGTGATGAGGCCACCTATCTCG
ACGGAAATCACGTCGTCTTCGGTATCGTAACTGATGGGCTCGACGTTTTG
GACAAAATCCACGATGCCCCGCGTACAAGAGAGGAACCTACTGAGAGAAT
TACCATCACTGACTGCGGGGACGTGCACAAGTCCGTGTCATGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:908592..909584-

>Ggra5550.t1 ID=Ggra5550.t1|Name=Ggra5550.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000842_pilon:908592..909584- (Gracilaria gracilis GNS1m male)
ATGTCTAGACGCAGACCTACAGACCCGCTAACTCCGCTGTTGGACGAGGA
CTTGGAGTCAGCCACACCCGACGTTGCCAATGGCAAACAGCGCTCTGCAG
CCGAGCGCGCCGGCCGTTTCTTCCGAACCCGCCCTGTTAGCTCGCTGTTG
CTCGTTATTGCGCTGTGCGCAGCCGCCATGCTCACCTTTTCAGCAGGGCG
CTCCGTTGCTCGCATGTTATCCGGCCGAACCGCAGATGAGAAACCGCCAG
AGCACGTCAGCGCGATTGCCAACTTCACCGAGCACGAAGAAGAGCATGCT
CCGGCACCGGACGAGAAGGGCACGCTTGTGGATGGCTCTGATGCGAGAGA
CGCCATTCAGGTAGCCGTTGAGGATCGTATGGATCAGAAGACCCAAAACG
AACGGAATGCTGTGTCGGAATCAAAGTGCTATCGCAAGTTTGAACCTGGC
AAACTAGGCTCTGCGCGAACTCTTTGCGTTACTGATGAGTTTTACTTCGA
TATATCCATCGGCAGTACACCAGTTGGGAGGATTACTATCGGCGTCTTCG
GCGATGTTGTACCAAAGAGTGCAGCAAATTTCCGCGCTCTGGCCACGTGC
ACGGGCGTGTTTGCTGATGACTCTCTCTGTTATAGACAAGATTCGTTCCA
CAGAGTCGTCACAAACTTCGTAGCCCAAGGCGGGTCGAAGGCTACTGGGC
GATCAATATATGGCCCCCCTTTCCAAGAAGAAAAGTCTAAAGATCATCAC
AGTTTCTTACAGCATGGGGAACGTGGGGTAGTGTCATGGGCCGAGTACCC
GATCGGCAGCCAGTTCTTCATCTTGATTCGTGATGAGGCCACCTATCTCG
ACGGAAATCACGTCGTCTTCGGTATCGTAACTGATGGGCTCGACGTTTTG
GACAAAATCCACGATGCCCCGCGTACAAGAGAGGAACCTACTGAGAGAAT
TACCATCACTGACTGCGGGGACGTGCACAAGTCCGTGTCATGA
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