Ggra555.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra555.t1
Unique NameGgra555.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000153_piloncontigtig00000153_pilon:282233..283627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra555Ggra555Gracilaria gracilis GNS1m malegenetig00000153_pilon 282233..283627 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra555.t1.start1Ggra555.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000153_pilon 282233..282235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra555.t1.CDS1Ggra555.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000153_pilon 282233..283627 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra555.t1.exon1Ggra555.t1.exon1Gracilaria gracilis GNS1m maleexontig00000153_pilon 282233..283627 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra555.t1.stop1Ggra555.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000153_pilon 283625..283627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra555.t1Ggra555.t1Gracilaria gracilis GNS1m malepolypeptidetig00000153_pilon 282233..283627 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra555.t1 ID=Ggra555.t1|Name=Ggra555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MSFLFTFFLLALLSYSSCSHVHIGDDENSGQYSSEDGTVHTYVAHSNVVQ
PTVFWEELLADGLSVVNCTNHRIAFSGEYDDDDFDVGNVLAFFKEDYHAI
GCPQSPLRDTASEKDPCVFRRIISVELTSGGLKVLTEHEYGYNVVPEVHI
SVDPEKPVTRKLNIDKQLDTTSRGDDIDEVSDIERHKVTLPNRPFKLFGS
ATVKPSGTISYDGGITDFNIFRTSTGGRATFEIGLYARPDVSLTFKSGEV
SLNKEVYIYNHTLPYLGFDFSLPGFGKLQGGVYMGATAVASFDFSTTFVV
KYKAVMNVDREIELKAGLAGFSAQAVQDTSYLHKSVFSNEASFTDFDAGV
GKEINIFAGLKPYVGVGFTNFPLVGDCHADLSVKFGFDVSGKVSSAAYPA
VTTGGTLGTCDVCHFLEGAVKFKIKDLAFNATQGSNKYGITIDQFVYDRS
LGTICAGEKPSGQC*
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spliced messenger RNA

>Ggra555.t1 ID=Ggra555.t1|Name=Ggra555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000153_pilon:282233..283627+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTTCTCTTTACTTTCTTCCTTCTCGCTTTACTTTCGTACTCAAG
CTGCAGCCATGTTCATATTGGTGACGACGAAAACTCTGGTCAATACTCTT
CAGAGGATGGTACCGTTCATACCTACGTCGCTCACTCCAATGTGGTACAA
CCTACAGTTTTCTGGGAGGAGCTCCTAGCCGATGGGCTCTCTGTCGTGAA
TTGCACCAACCACCGCATCGCATTCAGTGGAGAATACGATGATGACGATT
TTGATGTTGGTAATGTTCTTGCATTTTTCAAAGAAGATTATCATGCCATA
GGATGTCCTCAGTCGCCCCTGAGAGATACAGCTTCTGAAAAGGATCCATG
TGTCTTTCGAAGAATCATCTCTGTGGAACTCACTTctggtggtttaaagg
ttctaacggaacacgaatatggctacaacgtcgttccggaGGTGCATATT
TCTGTAGATCCAGAGAAACCAGTAACCAGAAAGCTGAACATTGACAAACA
ACTTGATACTACTTCACGCGGGGACGATATTGATGAAGTCTCGGACATCG
AAAGGCACAAAGTAACCCTTCCAAACAGGCCGTTCAAGTTGTTTGGATCG
GCTACCGTAAAGCCAAGTGGTACAATTTCTTATGATGGAGGGATCACTGA
TTTCAACATCTTCCGAACAAGCACGGGAGGACGTGCAACGTTCGAAATTG
GTCTCTACGCAAGGCCAGATGTTAGCCTAACTTTCAAAAGTGGTGAGGTT
TCCCTCAATAAGGAGGTATATATTTACAATCACACGCTTCCTTACTTAGG
ATTCGATTTCAGCCTACCGGGATTCGGGAAACTCCAAGGAGGTGTGTACA
TGGGCGCTACCGCAGTAGCAAGTTTTGACTTCTCGACAACCTTTGTGGTC
AAGTACAAAGCTGTCATGAATGTGGACAGGGAAATAGAGCTTAAAGCAGG
ATTGGCGGGATTCAGTGCACAGGCGGTGCAAGATACGTCGTACCTTCATA
AGTCAGTGTTTTCCAACGAAGCCAGTTTCACGGACTTTGACGCGGGAGTC
GGAAAAGAAATTAACATATTTGCCGGACTTAAACCGTATGTAGGTGTTGG
GTTCACTAATTTTCCATTGGTCGGTGATTGTCATGCTGATTTGTCTGTTA
AATTCGGATTTGATGTTAGTGGAAAGGTCAGTTCTGCTGCATATCCTGCC
GTGACGACAGGAGGTACACTAGGCACGTGCGATGTCTGCCATTTTCTGGA
GGGAGCTGTGAAATTTAAGATCAAGGACTTGGCGTTCAATGCCACTCAGG
GATCTAACAAATACGGTATTACTATCGACCAGTTTGTGTATGATCGCTCG
CTTGGTACAATTTGCGCTGGTGAGAAGCCCAGCGGACAGTGTTGA
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protein sequence of Ggra555.t1

>Ggra555.t1 ID=Ggra555.t1|Name=Ggra555.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MSFLFTFFLLALLSYSSCSHVHIGDDENSGQYSSEDGTVHTYVAHSNVVQ
PTVFWEELLADGLSVVNCTNHRIAFSGEYDDDDFDVGNVLAFFKEDYHAI
GCPQSPLRDTASEKDPCVFRRIISVELTSGGLKVLTEHEYGYNVVPEVHI
SVDPEKPVTRKLNIDKQLDTTSRGDDIDEVSDIERHKVTLPNRPFKLFGS
ATVKPSGTISYDGGITDFNIFRTSTGGRATFEIGLYARPDVSLTFKSGEV
SLNKEVYIYNHTLPYLGFDFSLPGFGKLQGGVYMGATAVASFDFSTTFVV
KYKAVMNVDREIELKAGLAGFSAQAVQDTSYLHKSVFSNEASFTDFDAGV
GKEINIFAGLKPYVGVGFTNFPLVGDCHADLSVKFGFDVSGKVSSAAYPA
VTTGGTLGTCDVCHFLEGAVKFKIKDLAFNATQGSNKYGITIDQFVYDRS
LGTICAGEKPSGQC*
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mRNA from alignment at tig00000153_pilon:282233..283627+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra555.t1 ID=Ggra555.t1|Name=Ggra555.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000153_pilon:282233..283627+ (Gracilaria gracilis GNS1m male)
ATGTCCTTTCTCTTTACTTTCTTCCTTCTCGCTTTACTTTCGTACTCAAG
CTGCAGCCATGTTCATATTGGTGACGACGAAAACTCTGGTCAATACTCTT
CAGAGGATGGTACCGTTCATACCTACGTCGCTCACTCCAATGTGGTACAA
CCTACAGTTTTCTGGGAGGAGCTCCTAGCCGATGGGCTCTCTGTCGTGAA
TTGCACCAACCACCGCATCGCATTCAGTGGAGAATACGATGATGACGATT
TTGATGTTGGTAATGTTCTTGCATTTTTCAAAGAAGATTATCATGCCATA
GGATGTCCTCAGTCGCCCCTGAGAGATACAGCTTCTGAAAAGGATCCATG
TGTCTTTCGAAGAATCATCTCTGTGGAACTCACTTctggtggtttaaagg
ttctaacggaacacgaatatggctacaacgtcgttccggaGGTGCATATT
TCTGTAGATCCAGAGAAACCAGTAACCAGAAAGCTGAACATTGACAAACA
ACTTGATACTACTTCACGCGGGGACGATATTGATGAAGTCTCGGACATCG
AAAGGCACAAAGTAACCCTTCCAAACAGGCCGTTCAAGTTGTTTGGATCG
GCTACCGTAAAGCCAAGTGGTACAATTTCTTATGATGGAGGGATCACTGA
TTTCAACATCTTCCGAACAAGCACGGGAGGACGTGCAACGTTCGAAATTG
GTCTCTACGCAAGGCCAGATGTTAGCCTAACTTTCAAAAGTGGTGAGGTT
TCCCTCAATAAGGAGGTATATATTTACAATCACACGCTTCCTTACTTAGG
ATTCGATTTCAGCCTACCGGGATTCGGGAAACTCCAAGGAGGTGTGTACA
TGGGCGCTACCGCAGTAGCAAGTTTTGACTTCTCGACAACCTTTGTGGTC
AAGTACAAAGCTGTCATGAATGTGGACAGGGAAATAGAGCTTAAAGCAGG
ATTGGCGGGATTCAGTGCACAGGCGGTGCAAGATACGTCGTACCTTCATA
AGTCAGTGTTTTCCAACGAAGCCAGTTTCACGGACTTTGACGCGGGAGTC
GGAAAAGAAATTAACATATTTGCCGGACTTAAACCGTATGTAGGTGTTGG
GTTCACTAATTTTCCATTGGTCGGTGATTGTCATGCTGATTTGTCTGTTA
AATTCGGATTTGATGTTAGTGGAAAGGTCAGTTCTGCTGCATATCCTGCC
GTGACGACAGGAGGTACACTAGGCACGTGCGATGTCTGCCATTTTCTGGA
GGGAGCTGTGAAATTTAAGATCAAGGACTTGGCGTTCAATGCCACTCAGG
GATCTAACAAATACGGTATTACTATCGACCAGTTTGTGTATGATCGCTCG
CTTGGTACAATTTGCGCTGGTGAGAAGCCCAGCGGACAGTGTTGA
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Coding sequence (CDS) from alignment at tig00000153_pilon:282233..283627+

>Ggra555.t1 ID=Ggra555.t1|Name=Ggra555.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000153_pilon:282233..283627+ (Gracilaria gracilis GNS1m male)
ATGTCCTTTCTCTTTACTTTCTTCCTTCTCGCTTTACTTTCGTACTCAAG
CTGCAGCCATGTTCATATTGGTGACGACGAAAACTCTGGTCAATACTCTT
CAGAGGATGGTACCGTTCATACCTACGTCGCTCACTCCAATGTGGTACAA
CCTACAGTTTTCTGGGAGGAGCTCCTAGCCGATGGGCTCTCTGTCGTGAA
TTGCACCAACCACCGCATCGCATTCAGTGGAGAATACGATGATGACGATT
TTGATGTTGGTAATGTTCTTGCATTTTTCAAAGAAGATTATCATGCCATA
GGATGTCCTCAGTCGCCCCTGAGAGATACAGCTTCTGAAAAGGATCCATG
TGTCTTTCGAAGAATCATCTCTGTGGAACTCACTTctggtggtttaaagg
ttctaacggaacacgaatatggctacaacgtcgttccggaGGTGCATATT
TCTGTAGATCCAGAGAAACCAGTAACCAGAAAGCTGAACATTGACAAACA
ACTTGATACTACTTCACGCGGGGACGATATTGATGAAGTCTCGGACATCG
AAAGGCACAAAGTAACCCTTCCAAACAGGCCGTTCAAGTTGTTTGGATCG
GCTACCGTAAAGCCAAGTGGTACAATTTCTTATGATGGAGGGATCACTGA
TTTCAACATCTTCCGAACAAGCACGGGAGGACGTGCAACGTTCGAAATTG
GTCTCTACGCAAGGCCAGATGTTAGCCTAACTTTCAAAAGTGGTGAGGTT
TCCCTCAATAAGGAGGTATATATTTACAATCACACGCTTCCTTACTTAGG
ATTCGATTTCAGCCTACCGGGATTCGGGAAACTCCAAGGAGGTGTGTACA
TGGGCGCTACCGCAGTAGCAAGTTTTGACTTCTCGACAACCTTTGTGGTC
AAGTACAAAGCTGTCATGAATGTGGACAGGGAAATAGAGCTTAAAGCAGG
ATTGGCGGGATTCAGTGCACAGGCGGTGCAAGATACGTCGTACCTTCATA
AGTCAGTGTTTTCCAACGAAGCCAGTTTCACGGACTTTGACGCGGGAGTC
GGAAAAGAAATTAACATATTTGCCGGACTTAAACCGTATGTAGGTGTTGG
GTTCACTAATTTTCCATTGGTCGGTGATTGTCATGCTGATTTGTCTGTTA
AATTCGGATTTGATGTTAGTGGAAAGGTCAGTTCTGCTGCATATCCTGCC
GTGACGACAGGAGGTACACTAGGCACGTGCGATGTCTGCCATTTTCTGGA
GGGAGCTGTGAAATTTAAGATCAAGGACTTGGCGTTCAATGCCACTCAGG
GATCTAACAAATACGGTATTACTATCGACCAGTTTGTGTATGATCGCTCG
CTTGGTACAATTTGCGCTGGTGAGAAGCCCAGCGGACAGTGTTGA
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