Ggra5546.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5546.t1
Unique NameGgra5546.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:894641..895314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5546Ggra5546Gracilaria gracilis GNS1m malegenetig00000842_pilon 894641..895314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5546.t1Ggra5546.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 894641..895314 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5546.t1.stop1Ggra5546.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 894641..894643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5546.t1.CDS1Ggra5546.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 894641..894955 -
Ggra5546.t1.CDS2Ggra5546.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 895039..895085 -
Ggra5546.t1.CDS3Ggra5546.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 895293..895314 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5546.t1.exon1Ggra5546.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 894641..894955 -
Ggra5546.t1.exon2Ggra5546.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 895039..895085 -
Ggra5546.t1.exon3Ggra5546.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 895293..895314 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5546.t1.intron1Ggra5546.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 894956..895038 -
Ggra5546.t1.intron2Ggra5546.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 895086..895292 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5546.t1.start1Ggra5546.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 895312..895314 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5546.t1 ID=Ggra5546.t1|Name=Ggra5546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=128bp
MDHLTLEDPSASRRLFILSNRSATPSSISKEHAKAKRNSGRGHGASRPID
SRRMYSRRADSSVLDQADSIPVSDSNSRPRDPDLNDVLARLEGREQRICV
IMGNMHNEMIKAANYMLECIYLFEEGG*
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spliced messenger RNA

>Ggra5546.t1 ID=Ggra5546.t1|Name=Ggra5546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp|location=Sequence derived from alignment at tig00000842_pilon:894641..895314- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCACTTAACTCTTGAAGATCCCTCAGCTTCCAGACGTTTGTTTAT
TCTGAGCAATCGCAGCGCGACGCCCAGTTCCATATCGAAGGAACATGCGA
AGGCCAAGAGAAACTCAGGCAGGGGTCATGGTGCTTCGCGCCCCATCGAC
TCTCGTAGAATGTATTCGCGAAGAGCGGATTCCTCTGTTTTGGATCAAGC
CGACTCGATCCCCGTCTCCGACAGCAACAGTCGCCCTAGGGATCCTGATT
TGAATGACGTATTGGCAAGGTTGGAGGGCCGTGAGCAGAGGATCTGTGTC
ATTATGGGCAACATGCACAACGAGATGATCAAGGCTGCCAACTACATGTT
GGAATGCATCTATCTATTTGAAGAAGGTGGTTGA
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protein sequence of Ggra5546.t1

>Ggra5546.t1 ID=Ggra5546.t1|Name=Ggra5546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=128bp
MDHLTLEDPSASRRLFILSNRSATPSSISKEHAKAKRNSGRGHGASRPID
SRRMYSRRADSSVLDQADSIPVSDSNSRPRDPDLNDVLARLEGREQRICV
IMGNMHNEMIKAANYMLECIYLFEEGG*
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mRNA from alignment at tig00000842_pilon:894641..895314-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5546.t1 ID=Ggra5546.t1|Name=Ggra5546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=674bp|location=Sequence derived from alignment at tig00000842_pilon:894641..895314- (Gracilaria gracilis GNS1m male)
ATGGACCACTTAACTCTTGAAGGTCCATGAATCTGGTCATCGCAGCCTTC
CAATCTTACCGACAACTGTGCTTTGCTTCATATTTTGACTTCAACTCGCA
CATTCGCCTTACGAACACCTTCAATCGAAACGGCGCGTATCGAAACGAAA
CATTTTGCTTCCGGCTGAGCTGCAAGCCTCGAGCGAAAGACATGATTCTA
TAAAGGCCGAAGTCCATTTCTGTTTGCAGATCCCTCAGCTTCCAGACGTT
TGTTTATTCTGAGCAATCGCAGCGCGGTATGCAACACACAGAACCTTCTT
TGCGTATTTCGCGAAACTTCGACGCGATACTGACGATTAATCCTCCGCTA
AACGAACAGACGCCCAGTTCCATATCGAAGGAACATGCGAAGGCCAAGAG
AAACTCAGGCAGGGGTCATGGTGCTTCGCGCCCCATCGACTCTCGTAGAA
TGTATTCGCGAAGAGCGGATTCCTCTGTTTTGGATCAAGCCGACTCGATC
CCCGTCTCCGACAGCAACAGTCGCCCTAGGGATCCTGATTTGAATGACGT
ATTGGCAAGGTTGGAGGGCCGTGAGCAGAGGATCTGTGTCATTATGGGCA
ACATGCACAACGAGATGATCAAGGCTGCCAACTACATGTTGGAATGCATC
TATCTATTTGAAGAAGGTGGTTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:894641..895314-

>Ggra5546.t1 ID=Ggra5546.t1|Name=Ggra5546.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=384bp|location=Sequence derived from alignment at tig00000842_pilon:894641..895314- (Gracilaria gracilis GNS1m male)
ATGGACCACTTAACTCTTGAAGATCCCTCAGCTTCCAGACGTTTGTTTAT
TCTGAGCAATCGCAGCGCGACGCCCAGTTCCATATCGAAGGAACATGCGA
AGGCCAAGAGAAACTCAGGCAGGGGTCATGGTGCTTCGCGCCCCATCGAC
TCTCGTAGAATGTATTCGCGAAGAGCGGATTCCTCTGTTTTGGATCAAGC
CGACTCGATCCCCGTCTCCGACAGCAACAGTCGCCCTAGGGATCCTGATT
TGAATGACGTATTGGCAAGGTTGGAGGGCCGTGAGCAGAGGATCTGTGTC
ATTATGGGCAACATGCACAACGAGATGATCAAGGCTGCCAACTACATGTT
GGAATGCATCTATCTATTTGAAGAAGGTGGTTGA
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