Ggra5537.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5537.t1
Unique NameGgra5537.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:850450..851079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD07962
PFAMsDUF1499
Max annot lvl2759|Eukaryota
Evalue3.4e-21
EggNOG OGs2E3E0@1|root,2SAH2@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5537Ggra5537Gracilaria gracilis GNS1m malegenetig00000842_pilon 850450..851079 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5537.t1.start1Ggra5537.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 850450..850452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5537.t1.CDS1Ggra5537.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 850450..851079 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5537.t1.exon1Ggra5537.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 850450..851079 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5537.t1.stop1Ggra5537.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 851077..851079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5537.t1Ggra5537.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 850450..851079 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5537.t1 ID=Ggra5537.t1|Name=Ggra5537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MSVRPEHVGRASPCSSGRAIAAALVAAAHIAYPLNTFALEEAALQDGLLR
PCEPPRLSCAVSQHDVPPSFVEPFEYDPATTTASEALQAVQRAALKEDGA
RLVDVNDQYLKFEFDLSRGGVDAAEFFFPDDDALVHFRSERTDGGFDYGS
NRARLRRIAVGARMSRLYVQRNRTRVFGFFESPFDRFGPSAVDVDSIIEK
APISARPVR*
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spliced messenger RNA

>Ggra5537.t1 ID=Ggra5537.t1|Name=Ggra5537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000842_pilon:850450..851079+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTTCGGCCCGAGCATGTTGGCCGCGCCAGTCCATGCAGCTCGGG
AAGAGCCATCGCCGCCGCGCTTGTAGCTGCTGCACATATCGCATATCCCC
TGAATACCTTCGCGCTGGAAGAAGCCGCGCTGCAGGACGGTCTGCTACGA
CCATGTGAACCGCCTCGTCTCTCCTGCGCCGTCTCTCAACACGATGTACC
GCCCTCCTTCGTCGAGCCTTTTGAATATGATCCCGCCACAACTACCGCCA
GTGAGGCACTACAAGCCGTTCAACGCGCGGCGCTGAAAGAAGACGGCGCG
CGTCTTGTCGACGTCAATGACCAGTATTTGAAGTTCGAGTTTGATTTGTC
GCGCGGTGGTGTGGATGCTGCGGAATTCTTCTTCCCCGATGACGATGCTC
TCGTTCATTTTCGCTCGGAACGAACCGATGGTGGGTTCGATTATGGCAGC
AATCGTGCGCGCTTGCGGCGCATTGCGGTTGGAGCGCGAATGAGTCGGTT
GTACGTACAGAGGAATCGGACGCGCGTGTTCGGGTTCTTTGAGAGCCCTT
TTGATCGTTTTGGCCCGTCGGCAGTTGACGTGGACTCCATAATTGAGAAA
GCGCCCATTTCAGCGAGGCCCGTGCGATGA
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protein sequence of Ggra5537.t1

>Ggra5537.t1 ID=Ggra5537.t1|Name=Ggra5537.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MSVRPEHVGRASPCSSGRAIAAALVAAAHIAYPLNTFALEEAALQDGLLR
PCEPPRLSCAVSQHDVPPSFVEPFEYDPATTTASEALQAVQRAALKEDGA
RLVDVNDQYLKFEFDLSRGGVDAAEFFFPDDDALVHFRSERTDGGFDYGS
NRARLRRIAVGARMSRLYVQRNRTRVFGFFESPFDRFGPSAVDVDSIIEK
APISARPVR*
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mRNA from alignment at tig00000842_pilon:850450..851079+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5537.t1 ID=Ggra5537.t1|Name=Ggra5537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000842_pilon:850450..851079+ (Gracilaria gracilis GNS1m male)
ATGAGCGTTCGGCCCGAGCATGTTGGCCGCGCCAGTCCATGCAGCTCGGG
AAGAGCCATCGCCGCCGCGCTTGTAGCTGCTGCACATATCGCATATCCCC
TGAATACCTTCGCGCTGGAAGAAGCCGCGCTGCAGGACGGTCTGCTACGA
CCATGTGAACCGCCTCGTCTCTCCTGCGCCGTCTCTCAACACGATGTACC
GCCCTCCTTCGTCGAGCCTTTTGAATATGATCCCGCCACAACTACCGCCA
GTGAGGCACTACAAGCCGTTCAACGCGCGGCGCTGAAAGAAGACGGCGCG
CGTCTTGTCGACGTCAATGACCAGTATTTGAAGTTCGAGTTTGATTTGTC
GCGCGGTGGTGTGGATGCTGCGGAATTCTTCTTCCCCGATGACGATGCTC
TCGTTCATTTTCGCTCGGAACGAACCGATGGTGGGTTCGATTATGGCAGC
AATCGTGCGCGCTTGCGGCGCATTGCGGTTGGAGCGCGAATGAGTCGGTT
GTACGTACAGAGGAATCGGACGCGCGTGTTCGGGTTCTTTGAGAGCCCTT
TTGATCGTTTTGGCCCGTCGGCAGTTGACGTGGACTCCATAATTGAGAAA
GCGCCCATTTCAGCGAGGCCCGTGCGATGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:850450..851079+

>Ggra5537.t1 ID=Ggra5537.t1|Name=Ggra5537.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000842_pilon:850450..851079+ (Gracilaria gracilis GNS1m male)
ATGAGCGTTCGGCCCGAGCATGTTGGCCGCGCCAGTCCATGCAGCTCGGG
AAGAGCCATCGCCGCCGCGCTTGTAGCTGCTGCACATATCGCATATCCCC
TGAATACCTTCGCGCTGGAAGAAGCCGCGCTGCAGGACGGTCTGCTACGA
CCATGTGAACCGCCTCGTCTCTCCTGCGCCGTCTCTCAACACGATGTACC
GCCCTCCTTCGTCGAGCCTTTTGAATATGATCCCGCCACAACTACCGCCA
GTGAGGCACTACAAGCCGTTCAACGCGCGGCGCTGAAAGAAGACGGCGCG
CGTCTTGTCGACGTCAATGACCAGTATTTGAAGTTCGAGTTTGATTTGTC
GCGCGGTGGTGTGGATGCTGCGGAATTCTTCTTCCCCGATGACGATGCTC
TCGTTCATTTTCGCTCGGAACGAACCGATGGTGGGTTCGATTATGGCAGC
AATCGTGCGCGCTTGCGGCGCATTGCGGTTGGAGCGCGAATGAGTCGGTT
GTACGTACAGAGGAATCGGACGCGCGTGTTCGGGTTCTTTGAGAGCCCTT
TTGATCGTTTTGGCCCGTCGGCAGTTGACGTGGACTCCATAATTGAGAAA
GCGCCCATTTCAGCGAGGCCCGTGCGATGA
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