Ggra5530.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5530.t1
Unique NameGgra5530.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:831175..832059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LTH8
PFAMsInositol_P
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K01092
KEGG ReactionR01185,R01186,R01187
KEGG Pathwayko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070
KEGG ModuleM00131
Evalue1.03e-54
EggNOG OGsCOG0483@1|root,KOG2951@2759|Eukaryota
EC3.1.3.25
DescriptionInositol-1-monophosphatase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5530Ggra5530Gracilaria gracilis GNS1m malegenetig00000842_pilon 831175..832059 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5530.t1.start1Ggra5530.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 831175..831177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5530.t1.CDS1Ggra5530.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 831175..832059 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5530.t1.exon1Ggra5530.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 831175..832059 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5530.t1.stop1Ggra5530.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 832057..832059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5530.t1Ggra5530.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 831175..832059 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5530.t1 ID=Ggra5530.t1|Name=Ggra5530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MNGPNVANGFALPDDAHTRHLLALRLAREAGDIIFSLRFGSSGRASGTQD
SLSLFTKSGESDLVTTADHASQEHIFSALSSAYPQHRLIGEETKESHAPL
DENPTWIVDAIDGTTNYVHGIPHFAVCIAHARDKKIELGVVYNPYSREMF
HGMRGKGSFMNGRKLSCSNTVKLKDALILSEWGYVRDEGAKSMLAPNERL
LIAGVRGIRQLGSGALDICYVAMGMADGVYCGVEDQKRDRWHVWDYAAAS
VIAEEAGAIMRTVDGGKFNVEGDSMVCTTPGVMKALLEVLRNDK*
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spliced messenger RNA

>Ggra5530.t1 ID=Ggra5530.t1|Name=Ggra5530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000842_pilon:831175..832059+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGACCGAACGTCGCAAACGGCTTTGCTCTACCGGATGACGCGCA
TACCCGTCATCTGCTCGCCTTGCGCCTCGCGCGGGAAGCCGGGGATATCA
TTTTCTCACTTCGATTTGGTAGCTCAGGTAGAGCCAGCGGTACACAAGAT
TCCCTCTCATTGTTTACCAAATCGGGTGAGAGCGACCTTGTGACAACGGC
AGATCATGCTTCCCAAGAACATATATTTTCTGCGCTAAGCAGTGCATATC
CGCAGCACCGATTGATCGGCGAGGAAACGAAGGAGTCCCACGCGCCACTT
GATGAGAACCCTACTTGGATTGTTGATGCTATTGATGGCACAACCAACTA
TGTGCATGGTATTCCTCACTTTGCTGTATGCATTGCTCATGCCAGAGACA
AAAAGATTGAACTGGGAGTGGTTTATAACCCATACTCCCGTGAGATGTTT
CACGGCATGCGCGGAAAGGGGTCTTTCATGAACGGGAGAAAGCTAAGCTG
TTCCAATACTGTCAAGTTGAAGGATGCCCTTATTCTTTCGGAGTGGGGAT
ATGTCAGGGATGAAGGGGCAAAAAGCATGTTGGCTCCTAATGAACGTTTG
CTTATAGCCGGTGTTCGTGGGATTAGACAGCTGGGCAGTGGGGCTTTGGA
TATTTGCTACGTTGCAATGGGTATGGCAGATGGTGTGTACTGCGGAGTTG
AAGATCAGAAGCGGGATCGTTGGCATGTGTGGGATTACGCAGCAGCTAGC
GTAATTGCGGAAGAGGCTGGTGCGATCATGAGAACTGTTGATGGCGGAAA
GTTCAACGTAGAAGGAGATAGCATGGTATGCACCACTCCAGGAGTAATGA
AGGCGCTATTGGAAGTGTTGCGAAACGATAAGTAG
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protein sequence of Ggra5530.t1

>Ggra5530.t1 ID=Ggra5530.t1|Name=Ggra5530.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MNGPNVANGFALPDDAHTRHLLALRLAREAGDIIFSLRFGSSGRASGTQD
SLSLFTKSGESDLVTTADHASQEHIFSALSSAYPQHRLIGEETKESHAPL
DENPTWIVDAIDGTTNYVHGIPHFAVCIAHARDKKIELGVVYNPYSREMF
HGMRGKGSFMNGRKLSCSNTVKLKDALILSEWGYVRDEGAKSMLAPNERL
LIAGVRGIRQLGSGALDICYVAMGMADGVYCGVEDQKRDRWHVWDYAAAS
VIAEEAGAIMRTVDGGKFNVEGDSMVCTTPGVMKALLEVLRNDK*
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mRNA from alignment at tig00000842_pilon:831175..832059+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5530.t1 ID=Ggra5530.t1|Name=Ggra5530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000842_pilon:831175..832059+ (Gracilaria gracilis GNS1m male)
ATGAATGGACCGAACGTCGCAAACGGCTTTGCTCTACCGGATGACGCGCA
TACCCGTCATCTGCTCGCCTTGCGCCTCGCGCGGGAAGCCGGGGATATCA
TTTTCTCACTTCGATTTGGTAGCTCAGGTAGAGCCAGCGGTACACAAGAT
TCCCTCTCATTGTTTACCAAATCGGGTGAGAGCGACCTTGTGACAACGGC
AGATCATGCTTCCCAAGAACATATATTTTCTGCGCTAAGCAGTGCATATC
CGCAGCACCGATTGATCGGCGAGGAAACGAAGGAGTCCCACGCGCCACTT
GATGAGAACCCTACTTGGATTGTTGATGCTATTGATGGCACAACCAACTA
TGTGCATGGTATTCCTCACTTTGCTGTATGCATTGCTCATGCCAGAGACA
AAAAGATTGAACTGGGAGTGGTTTATAACCCATACTCCCGTGAGATGTTT
CACGGCATGCGCGGAAAGGGGTCTTTCATGAACGGGAGAAAGCTAAGCTG
TTCCAATACTGTCAAGTTGAAGGATGCCCTTATTCTTTCGGAGTGGGGAT
ATGTCAGGGATGAAGGGGCAAAAAGCATGTTGGCTCCTAATGAACGTTTG
CTTATAGCCGGTGTTCGTGGGATTAGACAGCTGGGCAGTGGGGCTTTGGA
TATTTGCTACGTTGCAATGGGTATGGCAGATGGTGTGTACTGCGGAGTTG
AAGATCAGAAGCGGGATCGTTGGCATGTGTGGGATTACGCAGCAGCTAGC
GTAATTGCGGAAGAGGCTGGTGCGATCATGAGAACTGTTGATGGCGGAAA
GTTCAACGTAGAAGGAGATAGCATGGTATGCACCACTCCAGGAGTAATGA
AGGCGCTATTGGAAGTGTTGCGAAACGATAAGTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:831175..832059+

>Ggra5530.t1 ID=Ggra5530.t1|Name=Ggra5530.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000842_pilon:831175..832059+ (Gracilaria gracilis GNS1m male)
ATGAATGGACCGAACGTCGCAAACGGCTTTGCTCTACCGGATGACGCGCA
TACCCGTCATCTGCTCGCCTTGCGCCTCGCGCGGGAAGCCGGGGATATCA
TTTTCTCACTTCGATTTGGTAGCTCAGGTAGAGCCAGCGGTACACAAGAT
TCCCTCTCATTGTTTACCAAATCGGGTGAGAGCGACCTTGTGACAACGGC
AGATCATGCTTCCCAAGAACATATATTTTCTGCGCTAAGCAGTGCATATC
CGCAGCACCGATTGATCGGCGAGGAAACGAAGGAGTCCCACGCGCCACTT
GATGAGAACCCTACTTGGATTGTTGATGCTATTGATGGCACAACCAACTA
TGTGCATGGTATTCCTCACTTTGCTGTATGCATTGCTCATGCCAGAGACA
AAAAGATTGAACTGGGAGTGGTTTATAACCCATACTCCCGTGAGATGTTT
CACGGCATGCGCGGAAAGGGGTCTTTCATGAACGGGAGAAAGCTAAGCTG
TTCCAATACTGTCAAGTTGAAGGATGCCCTTATTCTTTCGGAGTGGGGAT
ATGTCAGGGATGAAGGGGCAAAAAGCATGTTGGCTCCTAATGAACGTTTG
CTTATAGCCGGTGTTCGTGGGATTAGACAGCTGGGCAGTGGGGCTTTGGA
TATTTGCTACGTTGCAATGGGTATGGCAGATGGTGTGTACTGCGGAGTTG
AAGATCAGAAGCGGGATCGTTGGCATGTGTGGGATTACGCAGCAGCTAGC
GTAATTGCGGAAGAGGCTGGTGCGATCATGAGAACTGTTGATGGCGGAAA
GTTCAACGTAGAAGGAGATAGCATGGTATGCACCACTCCAGGAGTAATGA
AGGCGCTATTGGAAGTGTTGCGAAACGATAAGTAG
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