Ggra5526.t3 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5526.t3
Unique NameGgra5526.t3
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:816199..817292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4533.OB05G30600.1
PFAMsUtp12,WD40
Max annot lvl35493|Streptophyta
KEGG koko:K14558
KEGG Pathwayko03008,map03008
GOsGO:0000028,GO:0000151,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009553,GO:0009743,GO:0009744,GO:0009987,GO:0010033,GO:0010119,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034388,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901700,GO:1902494,GO:1990234,GO:1990904
Evalue6.01e-16
EggNOG OGsKOG0291@1|root,KOG0291@2759|Eukaryota,37JUR@33090|Viridiplantae,3GFQ5@35493|Streptophyta,3KRXQ@4447|Liliopsida,3IAUN@38820|Poales
DescriptionDip2/Utp12 Family
COG categoryA
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5526Ggra5526Gracilaria gracilis GNS1m malegenetig00000842_pilon 814533..817292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5526.t3Ggra5526.t3Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 816199..817292 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5526.t3.stop1Ggra5526.t3.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 816199..816201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5526.t3.CDS1Ggra5526.t3.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 816199..816204 -
Ggra5526.t3.CDS2Ggra5526.t3.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 816267..817292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5526.t3.exon1Ggra5526.t3.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 816199..816204 -
Ggra5526.t3.exon2Ggra5526.t3.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 816267..817292 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5526.t3.intron1Ggra5526.t3.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 816205..816266 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5526.t3.start1Ggra5526.t3.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 817290..817292 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5526.t3 ID=Ggra5526.t3|Name=Ggra5526.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=344bp
MGIAQPKLRHVLPTNPQQVQLTFTSSNTLLHTANGRIQHTDPHHGRTRTL
AFEATRSISSISHTKNVILTTDNASRAALHLLPSGRVIARMSHKFEVRAS
ALSPCGKFAAFAGEHVEVWELPTGRVPTFGSWRRKAQFAVDSSCIEWSPD
SRRLAVASDSDVTVFTLSERQAGVHVKPLVIYGHRSVVKFMCFVGRNGMI
TMSKEGAMFCWRLRYNDESPDYNPMRYPYADQVRNPRRHFFTVPLSAKLA
SRHFVKRASARTVNSASVREGKMVVGLCNGVFAIFELPEHMTHESKEFDD
GLFALGNLKRKRKQLGVDADDAFDDGEERLKEGEKRIPFTELR*
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spliced messenger RNA

>Ggra5526.t3 ID=Ggra5526.t3|Name=Ggra5526.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000842_pilon:816199..817292- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGATCGCCCAGCCAAAACTTCGTCACGTGCTCCCGACTAACCCACA
ACAAGTTCAGCTAACGTTCACCTCCTCGAATACCTTGCTTCACACAGCCA
ATGGTCGTATCCAGCACACAGATCCCCATCACGGTAGAACTCGCACGCTC
GCATTTGAGGCGACCCGTTCCATTTCTTCGATAAGCCATACAAAGAATGT
GATCCTTACCACCGACAATGCCTCTCGCGCGGCGCTTCATTTGCTCCCTT
CTGGTCGAGTGATTGCACGCATGTCTCACAAATTCGAAGTCCGTGCATCT
GCTCTATCGCCGTGCGGCAAATTCGCTGCTTTTGCTGGTGAACACGTCGA
GGTCTGGGAGCTTCCCACTGGCCGTGTTCCTACCTTTGGGTCGTGGAGGC
GCAAGGCACAGTTTGCAGTGGACTCATCTTGTATCGAATGGAGCCCCGAT
TCACGCCGACTGGCAGTTGCATCGGATAGCGATGTGACTGTGTTCACGCT
TTCGGAACGACAAGCAGGCGTTCACGTTAAACCACTCGTTATTTATGGCC
ATCGAAGTGTCGTGAAATTCATGTGCTTTGTCGGTCGGAACGGAATGATA
ACAATGTCAAAGGAGGGGGCGATGTTTTGCTGGCGTCTGCGGTATAACGA
CGAAAGCCCGGACTACAACCCAATGCGGTATCCATATGCGGATCAAGTAC
GAAACCCGAGGAGACATTTCTTCACAGTACCACTATCGGCGAAACTCGCA
AGCCGCCATTTTGTTAAGCGCGCATCGGCTCGAACGGTAAATAGTGCATC
CGTTCGAGAAGGAAAGATGGTCGTTGGTTTGTGCAATGGAGTATTTGCAA
TTTTCGAGCTACCGGAACACATGACACATGAGTCAAAGGAATTTGATGAT
GGTCTCTTTGCTCTTGGAAATCTGAAGCGCAAGAGAAAACAACTAGGAGT
CGATGCTGATGATGCATTTGACGATGGCGAAGAGAGACTGAAAGAGGGCG
AGAAACGTATTCCGTTCACAGAGCTTCGGTGA
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protein sequence of Ggra5526.t3

>Ggra5526.t3 ID=Ggra5526.t3|Name=Ggra5526.t3|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MGIAQPKLRHVLPTNPQQVQLTFTSSNTLLHTANGRIQHTDPHHGRTRTL
AFEATRSISSISHTKNVILTTDNASRAALHLLPSGRVIARMSHKFEVRAS
ALSPCGKFAAFAGEHVEVWELPTGRVPTFGSWRRKAQFAVDSSCIEWSPD
SRRLAVASDSDVTVFTLSERQAGVHVKPLVIYGHRSVVKFMCFVGRNGMI
TMSKEGAMFCWRLRYNDESPDYNPMRYPYADQVRNPRRHFFTVPLSAKLA
SRHFVKRASARTVNSASVREGKMVVGLCNGVFAIFELPEHMTHESKEFDD
GLFALGNLKRKRKQLGVDADDAFDDGEERLKEGEKRIPFTELR*
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mRNA from alignment at tig00000842_pilon:816199..817292-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5526.t3 ID=Ggra5526.t3|Name=Ggra5526.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1094bp|location=Sequence derived from alignment at tig00000842_pilon:816199..817292- (Gracilaria gracilis GNS1m male)
ATGGGGATCGCCCAGCCAAAACTTCGTCACGTGCTCCCGACTAACCCACA
ACAAGTTCAGCTAACGTTCACCTCCTCGAATACCTTGCTTCACACAGCCA
ATGGTCGTATCCAGCACACAGATCCCCATCACGGTAGAACTCGCACGCTC
GCATTTGAGGCGACCCGTTCCATTTCTTCGATAAGCCATACAAAGAATGT
GATCCTTACCACCGACAATGCCTCTCGCGCGGCGCTTCATTTGCTCCCTT
CTGGTCGAGTGATTGCACGCATGTCTCACAAATTCGAAGTCCGTGCATCT
GCTCTATCGCCGTGCGGCAAATTCGCTGCTTTTGCTGGTGAACACGTCGA
GGTCTGGGAGCTTCCCACTGGCCGTGTTCCTACCTTTGGGTCGTGGAGGC
GCAAGGCACAGTTTGCAGTGGACTCATCTTGTATCGAATGGAGCCCCGAT
TCACGCCGACTGGCAGTTGCATCGGATAGCGATGTGACTGTGTTCACGCT
TTCGGAACGACAAGCAGGCGTTCACGTTAAACCACTCGTTATTTATGGCC
ATCGAAGTGTCGTGAAATTCATGTGCTTTGTCGGTCGGAACGGAATGATA
ACAATGTCAAAGGAGGGGGCGATGTTTTGCTGGCGTCTGCGGTATAACGA
CGAAAGCCCGGACTACAACCCAATGCGGTATCCATATGCGGATCAAGTAC
GAAACCCGAGGAGACATTTCTTCACAGTACCACTATCGGCGAAACTCGCA
AGCCGCCATTTTGTTAAGCGCGCATCGGCTCGAACGGTAAATAGTGCATC
CGTTCGAGAAGGAAAGATGGTCGTTGGTTTGTGCAATGGAGTATTTGCAA
TTTTCGAGCTACCGGAACACATGACACATGAGTCAAAGGAATTTGATGAT
GGTCTCTTTGCTCTTGGAAATCTGAAGCGCAAGAGAAAACAACTAGGAGT
CGATGCTGATGATGCATTTGACGATGGCGAAGAGAGACTGAAAGAGGGCG
AGAAACGTATTCCGTTCACAGAGCTTGTGCTTCTTCATACGCTGTCAGTC
TCCAGTGGAGCTATCAATCGCGTCGATTTCAATTCTAGCGGTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:816199..817292-

>Ggra5526.t3 ID=Ggra5526.t3|Name=Ggra5526.t3|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000842_pilon:816199..817292- (Gracilaria gracilis GNS1m male)
ATGGGGATCGCCCAGCCAAAACTTCGTCACGTGCTCCCGACTAACCCACA
ACAAGTTCAGCTAACGTTCACCTCCTCGAATACCTTGCTTCACACAGCCA
ATGGTCGTATCCAGCACACAGATCCCCATCACGGTAGAACTCGCACGCTC
GCATTTGAGGCGACCCGTTCCATTTCTTCGATAAGCCATACAAAGAATGT
GATCCTTACCACCGACAATGCCTCTCGCGCGGCGCTTCATTTGCTCCCTT
CTGGTCGAGTGATTGCACGCATGTCTCACAAATTCGAAGTCCGTGCATCT
GCTCTATCGCCGTGCGGCAAATTCGCTGCTTTTGCTGGTGAACACGTCGA
GGTCTGGGAGCTTCCCACTGGCCGTGTTCCTACCTTTGGGTCGTGGAGGC
GCAAGGCACAGTTTGCAGTGGACTCATCTTGTATCGAATGGAGCCCCGAT
TCACGCCGACTGGCAGTTGCATCGGATAGCGATGTGACTGTGTTCACGCT
TTCGGAACGACAAGCAGGCGTTCACGTTAAACCACTCGTTATTTATGGCC
ATCGAAGTGTCGTGAAATTCATGTGCTTTGTCGGTCGGAACGGAATGATA
ACAATGTCAAAGGAGGGGGCGATGTTTTGCTGGCGTCTGCGGTATAACGA
CGAAAGCCCGGACTACAACCCAATGCGGTATCCATATGCGGATCAAGTAC
GAAACCCGAGGAGACATTTCTTCACAGTACCACTATCGGCGAAACTCGCA
AGCCGCCATTTTGTTAAGCGCGCATCGGCTCGAACGGTAAATAGTGCATC
CGTTCGAGAAGGAAAGATGGTCGTTGGTTTGTGCAATGGAGTATTTGCAA
TTTTCGAGCTACCGGAACACATGACACATGAGTCAAAGGAATTTGATGAT
GGTCTCTTTGCTCTTGGAAATCTGAAGCGCAAGAGAAAACAACTAGGAGT
CGATGCTGATGATGCATTTGACGATGGCGAAGAGAGACTGAAAGAGGGCG
AGAAACGTATTCCGTTCACAGAGCTTCGGTGA
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