Ggra5521.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5521.t1
Unique NameGgra5521.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:804399..805786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5521Ggra5521Gracilaria gracilis GNS1m malegenetig00000842_pilon 804399..805786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5521.t1Ggra5521.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 804399..805786 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5521.t1.stop1Ggra5521.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 804399..804401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5521.t1.CDS1Ggra5521.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 804399..804768 -
Ggra5521.t1.CDS2Ggra5521.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 805467..805786 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5521.t1.exon1Ggra5521.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 804399..804768 -
Ggra5521.t1.exon2Ggra5521.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 805467..805786 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5521.t1.intron1Ggra5521.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 804769..805466 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5521.t1.start1Ggra5521.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 805784..805786 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5521.t1 ID=Ggra5521.t1|Name=Ggra5521.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MGCLPSRPEAVGAELQHDPEAYLLTIVLSDGMQVPCYVLPSDTIQQVRNR
VERKHGVQADVYRNGEMVPPPITADFNGRWHVVNPDSTIQMIGMPKRLEF
AFVSDRITKDTVVNHGYDDDGVESERSDENVQRSLRRLRPATTPLEPLQL
QKRPFPPPQPTMLTDPSTLARARTIQLSHALKKRLASIPHDVSLPNAAAR
RMQHALLSAQLSRIGLVAINARRWRANNL*
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spliced messenger RNA

>Ggra5521.t1 ID=Ggra5521.t1|Name=Ggra5521.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000842_pilon:804399..805786- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTGTTTGCCGTCCAGACCGGAAGCCGTTGGCGCCGAGTTACAACA
CGATCCGGAAGCGTATTTACTAACAATTGTTCTTTCTGATGGCATGCAGG
TTCCATGTTACGTTCTTCCTTCCGACACCATTCAGCAAGTTCGTAATCGT
GTTGAAAGGAAGCATGGTGTGCAGGCTGATGTTTATCGAAACGGAGAGAT
GGTTCCGCCACCGATAACGGCTGACTTCAATGGCCGGTGGCACGTGGTGA
ATCCTGACAGCACTATACAGATGATCGGCATGCCGAAACGCTTGGAATTT
GCATTCGTCAGCGACAGGATTACCAAGGATACCGTTGTAAACCACGGCTA
CGATGATGATGGAGTCGAATCGGAGCGCAGCGACGAGAATGTCCAACGCT
CACTGCGCCGTCTCCGCCCCGCGACGACCCCTCTCGAGCCGTTACAGCTT
CAAAAGCGGCCGTTCCCCCCGCCGCAGCCAACCATGCTCACCGACCCATC
CACGCTGGCGCGCGCGAGAACCATCCAGCTGTCTCACGCGCTCAAGAAGA
GACTGGCATCCATCCCTCACGACGTCTCTCTTCCCAATGCCGCTGCGCGT
CGCATGCAGCACGCGTTGCTGAGCGCCCAGCTTTCCCGTATTGGACTAGT
AGCTATCAACGCGCGTCGCTGGCGGGCGAACAACTTGTGA
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protein sequence of Ggra5521.t1

>Ggra5521.t1 ID=Ggra5521.t1|Name=Ggra5521.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MGCLPSRPEAVGAELQHDPEAYLLTIVLSDGMQVPCYVLPSDTIQQVRNR
VERKHGVQADVYRNGEMVPPPITADFNGRWHVVNPDSTIQMIGMPKRLEF
AFVSDRITKDTVVNHGYDDDGVESERSDENVQRSLRRLRPATTPLEPLQL
QKRPFPPPQPTMLTDPSTLARARTIQLSHALKKRLASIPHDVSLPNAAAR
RMQHALLSAQLSRIGLVAINARRWRANNL*
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mRNA from alignment at tig00000842_pilon:804399..805786-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5521.t1 ID=Ggra5521.t1|Name=Ggra5521.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1388bp|location=Sequence derived from alignment at tig00000842_pilon:804399..805786- (Gracilaria gracilis GNS1m male)
ATGGGTTGTTTGCCGTCCAGACCGGAAGCCGTTGGCGCCGAGTTACAACA
CGATCCGGAAGCGTATTTACTAACAATTGTTCTTTCTGATGGCATGCAGG
TTCCATGTTACGTTCTTCCTTCCGACACCATTCAGCAAGTTCGTAATCGT
GTTGAAAGGAAGCATGGTGTGCAGGCTGATGTTTATCGAAACGGAGAGAT
GGTTCCGCCACCGATAACGGCTGACTTCAATGGCCGGTGGCACGTGGTGA
ATCCTGACAGCACTATACAGATGATCGGCATGCCGAAACGCTTGGAATTT
GCATTCGTCAGCGACAGGATGTATTTCCCAGTATCATGATATAGACCCCA
CGTTTTGGCTTTATCGTAGCCCTCTTAACACCACGCTGACGGTGCGGCAA
AATATGAGTCACTCGTGCTTCTTAGCGTGCTGAAGGCGAAACGCGCGATT
GTCGTACAGCACCAGTTTGCATATTAGATGCTCATCATGCTTGTTACCTG
TGGCGCCCACTTGTTCTTCGTTGAGACAGCGTCGGCGGCTTTGCTTCACC
AAGCAGCCACGCTTCGTCAACCTGACCTCGTCGTAATAGCAAACACGGCG
CGTCACAGTACGTCCCGCGGTGCGCATCCACTGCGTTTTCTCTGCTTCAC
CACGTCTACCTCTTGTTAAGAACGGCCCTGTCAGTCCACTGTTGCAGTTG
CGCCCAACGGCGTGGCGCCAGCCTCGGAAACAACAGACAAGAGCGGCGCG
TCTTCGTAAAACAAAACATCCCCTTTCAAACGTGGACGTGAAGTCGTTTC
AGCTCAATTCAATCGTCGCACTTCACCGCGCGCATCGGTAAGTGTGCGGC
AGAATACTTCAGCAGTTTCAAAGGAACGAACCCGGTCACTGAGTAGTACT
CAGTGAGTACCATGCCCTTGTGCTAAGACTCGAACGGACAATTCTCCAGC
TCACTGCAGTGGCCGTTAATCGCCGTCGCTTGCGCCAAGCCGCGGCAAAT
GCGATGCTAATTGCGTAGTACCAAGGATACCGTTGTAAACCACGGCTACG
ATGATGATGGAGTCGAATCGGAGCGCAGCGACGAGAATGTCCAACGCTCA
CTGCGCCGTCTCCGCCCCGCGACGACCCCTCTCGAGCCGTTACAGCTTCA
AAAGCGGCCGTTCCCCCCGCCGCAGCCAACCATGCTCACCGACCCATCCA
CGCTGGCGCGCGCGAGAACCATCCAGCTGTCTCACGCGCTCAAGAAGAGA
CTGGCATCCATCCCTCACGACGTCTCTCTTCCCAATGCCGCTGCGCGTCG
CATGCAGCACGCGTTGCTGAGCGCCCAGCTTTCCCGTATTGGACTAGTAG
CTATCAACGCGCGTCGCTGGCGGGCGAACAACTTGTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:804399..805786-

>Ggra5521.t1 ID=Ggra5521.t1|Name=Ggra5521.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000842_pilon:804399..805786- (Gracilaria gracilis GNS1m male)
ATGGGTTGTTTGCCGTCCAGACCGGAAGCCGTTGGCGCCGAGTTACAACA
CGATCCGGAAGCGTATTTACTAACAATTGTTCTTTCTGATGGCATGCAGG
TTCCATGTTACGTTCTTCCTTCCGACACCATTCAGCAAGTTCGTAATCGT
GTTGAAAGGAAGCATGGTGTGCAGGCTGATGTTTATCGAAACGGAGAGAT
GGTTCCGCCACCGATAACGGCTGACTTCAATGGCCGGTGGCACGTGGTGA
ATCCTGACAGCACTATACAGATGATCGGCATGCCGAAACGCTTGGAATTT
GCATTCGTCAGCGACAGGATTACCAAGGATACCGTTGTAAACCACGGCTA
CGATGATGATGGAGTCGAATCGGAGCGCAGCGACGAGAATGTCCAACGCT
CACTGCGCCGTCTCCGCCCCGCGACGACCCCTCTCGAGCCGTTACAGCTT
CAAAAGCGGCCGTTCCCCCCGCCGCAGCCAACCATGCTCACCGACCCATC
CACGCTGGCGCGCGCGAGAACCATCCAGCTGTCTCACGCGCTCAAGAAGA
GACTGGCATCCATCCCTCACGACGTCTCTCTTCCCAATGCCGCTGCGCGT
CGCATGCAGCACGCGTTGCTGAGCGCCCAGCTTTCCCGTATTGGACTAGT
AGCTATCAACGCGCGTCGCTGGCGGGCGAACAACTTGTGA
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