Ggra5511.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5511.t1
Unique NameGgra5511.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:681437..682165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1196028.ALEF01000035_gene993
Preferred namemaa
PFAMsCM_2,Hexapep,Hexapep_2,Mac
Max annot lvl91061|Bacilli
KEGG koko:K00661
Evalue3.78e-56
EggNOG OGsCOG0110@1|root,COG0110@2|Bacteria,1TQEX@1239|Firmicutes,4HAJ0@91061|Bacilli,4C6II@84406|Virgibacillus
EC2.3.1.79
DescriptionMaltose acetyltransferase
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5511Ggra5511Gracilaria gracilis GNS1m malegenetig00000842_pilon 681437..682165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5511.t1Ggra5511.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 681437..682165 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5511.t1.stop1Ggra5511.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 681437..681439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5511.t1.CDS1Ggra5511.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 681437..681728 -
Ggra5511.t1.CDS2Ggra5511.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 681873..682165 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5511.t1.exon1Ggra5511.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 681437..681728 -
Ggra5511.t1.exon2Ggra5511.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 681873..682165 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5511.t1.intron1Ggra5511.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 681729..681872 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5511.t1.start1Ggra5511.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 682163..682165 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5511.t1 ID=Ggra5511.t1|Name=Ggra5511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=195bp
MEGVEDCEFQKMISGALYNPEWPSLFSMRAKVKRLYKEYNENVGYSEDSE
KRFQHLSGIVGVLGQDPMIEPPFRVDYGINIEIGKNFYANCDVVILDCAK
VTIGDNVLVGPGVHIYTPTHPLDVETRHYRKLEMARPVTIGKDVWIGGKA
VVLPGVTIGEGSVIGAGSVVNKDVPPFCLAVGNPAKVIKKLEVK*
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spliced messenger RNA

>Ggra5511.t1 ID=Ggra5511.t1|Name=Ggra5511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000842_pilon:681437..682165- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGAGTCGAGGATTGTGAGTTTCAGAAGATGATTTCCGGAGCTTT
GTATAACCCTGAGTGGCCGAGCTTATTTTCTATGCGAGCTAAAGTCAAAC
GTTTGTACAAAGAATACAACGAGAATGTAGGTTACTCGGAAGATTCCGAG
AAGAGATTTCAGCATTTGTCGGGCATCGTTGGTGTGTTAGGACAGGACCC
CATGATTGAACCTCCGTTTCGCGTTGACTACGGAATAAACATTGAGATTG
GGAAAAATTTCTATGCCAACTGCGACGTTGTCATTTTGGACTGTGCCAAA
GTTACCATTGGAGATAATGTTCTCGTCGGACCTGGGGTGCACATCTACAC
TCCTACTCATCCGCTTGACGTTGAAACAAGGCACTACCGTAAACTAGAAA
TGGCGCGACCTGTTACGATTGGGAAGGATGTATGGATTGGCGGCAAGGCC
GTTGTGCTTCCAGGAGTTACGATAGGGGAAGGGAGCGTAATCGGAGCAGG
CTCTGTTGTCAACAAAGATGTTCCTCCATTTTGTTTGGCTGTTGGAAACC
CGGCGAAAGTTATAAAGAAGTTGGAAGTGAAATAG
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protein sequence of Ggra5511.t1

>Ggra5511.t1 ID=Ggra5511.t1|Name=Ggra5511.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MEGVEDCEFQKMISGALYNPEWPSLFSMRAKVKRLYKEYNENVGYSEDSE
KRFQHLSGIVGVLGQDPMIEPPFRVDYGINIEIGKNFYANCDVVILDCAK
VTIGDNVLVGPGVHIYTPTHPLDVETRHYRKLEMARPVTIGKDVWIGGKA
VVLPGVTIGEGSVIGAGSVVNKDVPPFCLAVGNPAKVIKKLEVK*
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mRNA from alignment at tig00000842_pilon:681437..682165-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5511.t1 ID=Ggra5511.t1|Name=Ggra5511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000842_pilon:681437..682165- (Gracilaria gracilis GNS1m male)
ATGGAGGGAGTCGAGGATTGTGAGTTTCAGAAGATGATTTCCGGAGCTTT
GTATAACCCTGAGTGGCCGAGCTTATTTTCTATGCGAGCTAAAGTCAAAC
GTTTGTACAAAGAATACAACGAGAATGTAGGTTACTCGGAAGATTCCGAG
AAGAGATTTCAGCATTTGTCGGGCATCGTTGGTGTGTTAGGACAGGACCC
CATGATTGAACCTCCGTTTCGCGTTGACTACGGAATAAACATTGAGATTG
GGAAAAATTTCTATGCCAACTGCGACGTTGTCATTTTGGACTGGTAAGTT
GACCTTTTCCCATCAGTCATAAGGTTAGAGTACAGCGGTTCAAAGGATGA
TCATCATGTATGATGATTCGAAGAGAACTCTGCAAGCCCAAACAGTATGC
TCACTCTTTTTGATCTCAACTCTTTCTGCGGGAGCAGTGCCAAAGTTACC
ATTGGAGATAATGTTCTCGTCGGACCTGGGGTGCACATCTACACTCCTAC
TCATCCGCTTGACGTTGAAACAAGGCACTACCGTAAACTAGAAATGGCGC
GACCTGTTACGATTGGGAAGGATGTATGGATTGGCGGCAAGGCCGTTGTG
CTTCCAGGAGTTACGATAGGGGAAGGGAGCGTAATCGGAGCAGGCTCTGT
TGTCAACAAAGATGTTCCTCCATTTTGTTTGGCTGTTGGAAACCCGGCGA
AAGTTATAAAGAAGTTGGAAGTGAAATAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:681437..682165-

>Ggra5511.t1 ID=Ggra5511.t1|Name=Ggra5511.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000842_pilon:681437..682165- (Gracilaria gracilis GNS1m male)
ATGGAGGGAGTCGAGGATTGTGAGTTTCAGAAGATGATTTCCGGAGCTTT
GTATAACCCTGAGTGGCCGAGCTTATTTTCTATGCGAGCTAAAGTCAAAC
GTTTGTACAAAGAATACAACGAGAATGTAGGTTACTCGGAAGATTCCGAG
AAGAGATTTCAGCATTTGTCGGGCATCGTTGGTGTGTTAGGACAGGACCC
CATGATTGAACCTCCGTTTCGCGTTGACTACGGAATAAACATTGAGATTG
GGAAAAATTTCTATGCCAACTGCGACGTTGTCATTTTGGACTGTGCCAAA
GTTACCATTGGAGATAATGTTCTCGTCGGACCTGGGGTGCACATCTACAC
TCCTACTCATCCGCTTGACGTTGAAACAAGGCACTACCGTAAACTAGAAA
TGGCGCGACCTGTTACGATTGGGAAGGATGTATGGATTGGCGGCAAGGCC
GTTGTGCTTCCAGGAGTTACGATAGGGGAAGGGAGCGTAATCGGAGCAGG
CTCTGTTGTCAACAAAGATGTTCCTCCATTTTGTTTGGCTGTTGGAAACC
CGGCGAAAGTTATAAAGAAGTTGGAAGTGAAATAG
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