Ggra551.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra551.t1
Unique NameGgra551.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000153_piloncontigtig00000153_pilon:255901..257333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1460634.JCM19037_4396
PFAMsMFS_1
Max annot lvl91061|Bacilli
KEGG koko:K08177
KEGG TC2.A.1.11
Evalue3.87e-08
EggNOG OGsCOG2223@1|root,COG2223@2|Bacteria,1TPR9@1239|Firmicutes,4HB93@91061|Bacilli
DescriptionCOG0477 Permeases of the major facilitator superfamily
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra551Ggra551Gracilaria gracilis GNS1m malegenetig00000153_pilon 255901..257333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra551.t1Ggra551.t1Gracilaria gracilis GNS1m malepolypeptidetig00000153_pilon 255901..257333 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra551.t1.stop1Ggra551.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000153_pilon 255901..255903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra551.t1.CDS1Ggra551.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000153_pilon 255901..256841 -
Ggra551.t1.CDS2Ggra551.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000153_pilon 256931..257333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra551.t1.exon1Ggra551.t1.exon1Gracilaria gracilis GNS1m maleexontig00000153_pilon 255901..256841 -
Ggra551.t1.exon2Ggra551.t1.exon2Gracilaria gracilis GNS1m maleexontig00000153_pilon 256931..257333 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra551.t1.intron1Ggra551.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000153_pilon 256842..256930 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra551.t1.start1Ggra551.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000153_pilon 257331..257333 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra551.t1 ID=Ggra551.t1|Name=Ggra551.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=448bp
MVSPPQATPSAFANSTLSCLLLFAAGSTFSLGIFTVPVENGASRSHSLDG
VWETSMGLLHFVSAPIMMLAGVYLDSGAPKLTGPLQSKTARVRVLSASCL
IAFSFLSLAVLGAARCMPTPILVGVGMQAFPLGVGFSLCLELLLVWNTER
PGLAVGVGQTAFGLGAIFFVQLFDLFIREVGYLNAIHCAAFVLVLAALAP
TFLMSWPSEGEEQSADELDSERQPILGRPAAVGKIGLGELLRSSSFWYYV
FATFTSGASYMLNPYYFKLGLLFNRRMDVLVPLFQITNFAAVALSLVGAW
LTDYMSFGDGFWFSGSRNMMMLFMVLQSVLFVGMVQFSNKMYFWGFVLVK
ALLKIVMACHAGCAVLMANDLYGRLNSALVFGVGGGLALGLGEACSAWLM
ASVEWMAGTIERPADYNPFYWIAALWSLLALVAVARTTRWSPCVTTR*
back to top

spliced messenger RNA

>Ggra551.t1 ID=Ggra551.t1|Name=Ggra551.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000153_pilon:255901..257333- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCCCCCCACAAGCGACCCCATCGGCGTTCGCCAATTCAACGCT
GTCATGTTTGCTGTTGTTCGCCGCTGGTTCAACTTTCTCGCTTGGCATTT
TCACCGTACCAGTTGAGAATGGCGCCTCCCGCAGCCATTCGCTCGACGGC
GTGTGGGAAACTTCTATGGGCTTGTTGCACTTCGTTTCTGCGCCGATCAT
GATGCTAGCCGGTGTGTATCTGGACTCTGGAGCACCGAAGCTTACCGGGC
CTCTGCAATCTAAGACTGCGCGTGTTCGTGTTTTGTCTGCAAGCTGTTTG
ATAGCGTTTTCATTTTTGAGTCTGGCCGTTCTGGGTGCTGCTCGTTGCAT
GCCAACGCCGATACTGGTTGGGGTGGGCATGCAAGCGTTTCCCCTGGGGG
TGGGTTTCTCGCTTTGTCTGGAGTTGTTGCTGGTATGGAACACCGAGCGG
CCCGGACTTGCTGTTGGAGTGGGACAGACGGCGTTCGGGCTGGGTGCAAT
CTTCTTCGTACAATTGTTTGATTTGTTCATTAGGGAAGTCGGTTACTTGA
ACGCCATTCACTGCGCTGCGTTTGTACTGGTTTTAGCGGCGCTGGCTCCT
ACCTTTTTGATGAGCTGGCCATCAGAAGGGGAGGAACAGAGTGCGGACGA
GTTGGACAGCGAACGACAACCTATTTTGGGACGCCCTGCGGCGGTGGGAA
AGATCGGATTGGGTGAACTGCTGCGCTCGAGCAGCTTCTGGTACTATGTT
TTCGCAACTTTCACGTCTGGGGCGAGTTACATGCTCAACCCGTACTACTT
CAAGCTTGGGCTTCTGTTCAACAGGCGGATGGATGTTTTGGTGCCTTTGT
TCCAAATCACGAACTTTGCTGCGGTGGCGCTGAGCCTGGTAGGAGCTTGG
CTGACGGATTACATGAGCTTTGGGGACGGCTTCTGGTTCTCCGGGTCAAG
GAACATGATGATGTTGTTCATGGTATTGCAGTCGGTGCTGTTTGTGGGCA
TGGTGCAGTTCTCGAACAAGATGTATTTCTGGGGCTTTGTGTTGGTGAAA
GCGCTGCTGAAGATTGTGATGGCGTGCCACGCTGGGTGTGCTGTGTTGAT
GGCGAACGACCTGTATGGCAGGCTCAACAGCGCGCTTGTGTTTGGAGTGG
GGGGCGGTTTGGCGCTGGGACTTGGCGAAGCGTGTTCAGCGTGGCTCATG
GCGAGCGTGGAATGGATGGCGGGCACTATTGAGCGACCTGCCGATTACAA
CCCGTTTTACTGGATTGCTGCCTTGTGGAGTTTGCTCGCGTTAGTTGCTG
TGGCGCGCACCACCAGGTGGTCACCATGCGTGACCACTCGCTGA
back to top

protein sequence of Ggra551.t1

>Ggra551.t1 ID=Ggra551.t1|Name=Ggra551.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=448bp
MVSPPQATPSAFANSTLSCLLLFAAGSTFSLGIFTVPVENGASRSHSLDG
VWETSMGLLHFVSAPIMMLAGVYLDSGAPKLTGPLQSKTARVRVLSASCL
IAFSFLSLAVLGAARCMPTPILVGVGMQAFPLGVGFSLCLELLLVWNTER
PGLAVGVGQTAFGLGAIFFVQLFDLFIREVGYLNAIHCAAFVLVLAALAP
TFLMSWPSEGEEQSADELDSERQPILGRPAAVGKIGLGELLRSSSFWYYV
FATFTSGASYMLNPYYFKLGLLFNRRMDVLVPLFQITNFAAVALSLVGAW
LTDYMSFGDGFWFSGSRNMMMLFMVLQSVLFVGMVQFSNKMYFWGFVLVK
ALLKIVMACHAGCAVLMANDLYGRLNSALVFGVGGGLALGLGEACSAWLM
ASVEWMAGTIERPADYNPFYWIAALWSLLALVAVARTTRWSPCVTTR*
back to top

mRNA from alignment at tig00000153_pilon:255901..257333-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra551.t1 ID=Ggra551.t1|Name=Ggra551.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1433bp|location=Sequence derived from alignment at tig00000153_pilon:255901..257333- (Gracilaria gracilis GNS1m male)
ATGGTTTCCCCCCCACAAGCGACCCCATCGGCGTTCGCCAATTCAACGCT
GTCATGTTTGCTGTTGTTCGCCGCTGGTTCAACTTTCTCGCTTGGCATTT
TCACCGTACCAGTTGAGAATGGCGCCTCCCGCAGCCATTCGCTCGACGGC
GTGTGGGAAACTTCTATGGGCTTGTTGCACTTCGTTTCTGCGCCGATCAT
GATGCTAGCCGGTGTGTATCTGGACTCTGGAGCACCGAAGCTTACCGGGC
CTCTGCAATCTAAGACTGCGCGTGTTCGTGTTTTGTCTGCAAGCTGTTTG
ATAGCGTTTTCATTTTTGAGTCTGGCCGTTCTGGGTGCTGCTCGTTGCAT
GCCAACGCCGATACTGGTTGGGGTGGGCATGCAAGCGTTTCCCCTGGGGG
TGGGTATGTGCTCGGTCAGGCGTTGCATCTCGACGGTAGCGCTTGTGGGT
GACGTCTAACTCTCCAATTTTGTTATGTTTTCACTGGAGCAGGTTTCTCG
CTTTGTCTGGAGTTGTTGCTGGTATGGAACACCGAGCGGCCCGGACTTGC
TGTTGGAGTGGGACAGACGGCGTTCGGGCTGGGTGCAATCTTCTTCGTAC
AATTGTTTGATTTGTTCATTAGGGAAGTCGGTTACTTGAACGCCATTCAC
TGCGCTGCGTTTGTACTGGTTTTAGCGGCGCTGGCTCCTACCTTTTTGAT
GAGCTGGCCATCAGAAGGGGAGGAACAGAGTGCGGACGAGTTGGACAGCG
AACGACAACCTATTTTGGGACGCCCTGCGGCGGTGGGAAAGATCGGATTG
GGTGAACTGCTGCGCTCGAGCAGCTTCTGGTACTATGTTTTCGCAACTTT
CACGTCTGGGGCGAGTTACATGCTCAACCCGTACTACTTCAAGCTTGGGC
TTCTGTTCAACAGGCGGATGGATGTTTTGGTGCCTTTGTTCCAAATCACG
AACTTTGCTGCGGTGGCGCTGAGCCTGGTAGGAGCTTGGCTGACGGATTA
CATGAGCTTTGGGGACGGCTTCTGGTTCTCCGGGTCAAGGAACATGATGA
TGTTGTTCATGGTATTGCAGTCGGTGCTGTTTGTGGGCATGGTGCAGTTC
TCGAACAAGATGTATTTCTGGGGCTTTGTGTTGGTGAAAGCGCTGCTGAA
GATTGTGATGGCGTGCCACGCTGGGTGTGCTGTGTTGATGGCGAACGACC
TGTATGGCAGGCTCAACAGCGCGCTTGTGTTTGGAGTGGGGGGCGGTTTG
GCGCTGGGACTTGGCGAAGCGTGTTCAGCGTGGCTCATGGCGAGCGTGGA
ATGGATGGCGGGCACTATTGAGCGACCTGCCGATTACAACCCGTTTTACT
GGATTGCTGCCTTGTGGAGTTTGCTCGCGTTAGTTGCTGTGGCGCGCACC
ACCAGGTGGTCACCATGCGTGACCACTCGCTGA
back to top

Coding sequence (CDS) from alignment at tig00000153_pilon:255901..257333-

>Ggra551.t1 ID=Ggra551.t1|Name=Ggra551.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00000153_pilon:255901..257333- (Gracilaria gracilis GNS1m male)
ATGGTTTCCCCCCCACAAGCGACCCCATCGGCGTTCGCCAATTCAACGCT
GTCATGTTTGCTGTTGTTCGCCGCTGGTTCAACTTTCTCGCTTGGCATTT
TCACCGTACCAGTTGAGAATGGCGCCTCCCGCAGCCATTCGCTCGACGGC
GTGTGGGAAACTTCTATGGGCTTGTTGCACTTCGTTTCTGCGCCGATCAT
GATGCTAGCCGGTGTGTATCTGGACTCTGGAGCACCGAAGCTTACCGGGC
CTCTGCAATCTAAGACTGCGCGTGTTCGTGTTTTGTCTGCAAGCTGTTTG
ATAGCGTTTTCATTTTTGAGTCTGGCCGTTCTGGGTGCTGCTCGTTGCAT
GCCAACGCCGATACTGGTTGGGGTGGGCATGCAAGCGTTTCCCCTGGGGG
TGGGTTTCTCGCTTTGTCTGGAGTTGTTGCTGGTATGGAACACCGAGCGG
CCCGGACTTGCTGTTGGAGTGGGACAGACGGCGTTCGGGCTGGGTGCAAT
CTTCTTCGTACAATTGTTTGATTTGTTCATTAGGGAAGTCGGTTACTTGA
ACGCCATTCACTGCGCTGCGTTTGTACTGGTTTTAGCGGCGCTGGCTCCT
ACCTTTTTGATGAGCTGGCCATCAGAAGGGGAGGAACAGAGTGCGGACGA
GTTGGACAGCGAACGACAACCTATTTTGGGACGCCCTGCGGCGGTGGGAA
AGATCGGATTGGGTGAACTGCTGCGCTCGAGCAGCTTCTGGTACTATGTT
TTCGCAACTTTCACGTCTGGGGCGAGTTACATGCTCAACCCGTACTACTT
CAAGCTTGGGCTTCTGTTCAACAGGCGGATGGATGTTTTGGTGCCTTTGT
TCCAAATCACGAACTTTGCTGCGGTGGCGCTGAGCCTGGTAGGAGCTTGG
CTGACGGATTACATGAGCTTTGGGGACGGCTTCTGGTTCTCCGGGTCAAG
GAACATGATGATGTTGTTCATGGTATTGCAGTCGGTGCTGTTTGTGGGCA
TGGTGCAGTTCTCGAACAAGATGTATTTCTGGGGCTTTGTGTTGGTGAAA
GCGCTGCTGAAGATTGTGATGGCGTGCCACGCTGGGTGTGCTGTGTTGAT
GGCGAACGACCTGTATGGCAGGCTCAACAGCGCGCTTGTGTTTGGAGTGG
GGGGCGGTTTGGCGCTGGGACTTGGCGAAGCGTGTTCAGCGTGGCTCATG
GCGAGCGTGGAATGGATGGCGGGCACTATTGAGCGACCTGCCGATTACAA
CCCGTTTTACTGGATTGCTGCCTTGTGGAGTTTGCTCGCGTTAGTTGCTG
TGGCGCGCACCACCAGGTGGTCACCATGCGTGACCACTCGCTGA
back to top