Ggra5509.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5509.t1
Unique NameGgra5509.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:625819..626742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S29_184V6.2
Preferred nameUGLYAH
PFAMsCupin_2
Max annot lvl35493|Streptophyta
KEGG rclassRC01419
KEGG koko:K14977
KEGG ReactionR05554
KEGG Pathwayko00230,ko01120,map00230,map01120
GOsGO:0000255,GO:0000256,GO:0003674,GO:0003700,GO:0003824,GO:0006139,GO:0006144,GO:0006145,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009889,GO:0009987,GO:0010135,GO:0010136,GO:0010468,GO:0010556,GO:0016787,GO:0016810,GO:0016813,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031326,GO:0034641,GO:0042737,GO:0043603,GO:0043605,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0046113,GO:0046483,GO:0046700,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0055086,GO:0060255,GO:0065007,GO:0071522,GO:0071704,GO:0072521,GO:0072523,GO:0080090,GO:0140110,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1903506,GO:2000112,GO:2001141
Evalue2.19e-55
EggNOG OGsCOG3257@1|root,2QS1M@2759|Eukaryota,37R4M@33090|Viridiplantae,3GDWC@35493|Streptophyta
EC3.5.3.26
Descriptionaminohydrolase
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5509Ggra5509Gracilaria gracilis GNS1m malegenetig00000842_pilon 625819..626742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5509.t1Ggra5509.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 625819..626742 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5509.t1.stop1Ggra5509.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 625819..625821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5509.t1.CDS1Ggra5509.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 625819..626273 -
Ggra5509.t1.CDS2Ggra5509.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 626451..626742 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5509.t1.exon1Ggra5509.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 625819..626273 -
Ggra5509.t1.exon2Ggra5509.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 626451..626742 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5509.t1.intron1Ggra5509.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 626274..626450 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5509.t1.start1Ggra5509.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 626740..626742 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5509.t1 ID=Ggra5509.t1|Name=Ggra5509.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp
MHTDPPRFPSVVVAIVAFLIAARVNACETCSECDAYDYLEAAIPSSQLLP
GETRSVFAPHSHALIAPDSRVYSAPPPGWSGSLNAAAVVTPALGAHFNDS
LSIVVPTDAQFVQIDRVKAIKHAAPSVIGSESEVNPELVAGEVFELRRLL
DASNPAYDFNIHIMDFNPGEYLNVKEVHYNQHGLLMLQGQGIYRLSDSYY
HVAAGDVIYLAPFVLQWYAALGTQPTRYFLYKDTNVDPLLHNNCPGVV*
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spliced messenger RNA

>Ggra5509.t1 ID=Ggra5509.t1|Name=Ggra5509.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000842_pilon:625819..626742- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATACCGATCCGCCGCGTTTTCCGTCCGTCGTTGTTGCAATCGTCGC
TTTTCTCATCGCCGCCCGTGTCAATGCGTGCGAGACGTGTTCGGAATGTG
ATGCTTACGACTACCTCGAGGCTGCTATCCCGTCTTCACAGCTGCTTCCG
GGCGAGACCCGTTCCGTCTTCGCGCCCCATTCTCACGCGCTCATTGCGCC
CGATTCGCGCGTGTACAGCGCTCCGCCGCCCGGATGGAGCGGATCACTTA
ATGCTGCCGCCGTCGTCACGCCTGCGCTAGGCGCGCATTTCAACGACTCT
CTGTCTATTGTCGTTCCGACCGACGCGCAGTTTGTTCAAATTGACCGCGT
CAAGGCTATCAAACATGCTGCACCTTCCGTCATCGGCTCCGAAAGCGAAG
TAAACCCAGAACTGGTTGCCGGCGAAGTATTTGAACTTCGTCGTTTGCTG
GACGCTTCTAATCCGGCATACGATTTCAACATTCACATCATGGACTTTAA
TCCAGGAGAATATCTTAACGTTAAGGAAGTGCACTATAATCAACATGGAC
TTCTTATGCTCCAAGGGCAGGGAATCTACCGTCTTTCTGATTCTTATTAT
CATGTTGCTGCCGGGGACGTCATATATTTGGCTCCATTTGTCCTGCAGTG
GTACGCTGCTCTTGGAACCCAGCCTACCCGATACTTCCTCTACAAAGATA
CCAACGTTGACCCCTTACTTCACAACAACTGTCCAGGCGTCGTATAA
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protein sequence of Ggra5509.t1

>Ggra5509.t1 ID=Ggra5509.t1|Name=Ggra5509.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MHTDPPRFPSVVVAIVAFLIAARVNACETCSECDAYDYLEAAIPSSQLLP
GETRSVFAPHSHALIAPDSRVYSAPPPGWSGSLNAAAVVTPALGAHFNDS
LSIVVPTDAQFVQIDRVKAIKHAAPSVIGSESEVNPELVAGEVFELRRLL
DASNPAYDFNIHIMDFNPGEYLNVKEVHYNQHGLLMLQGQGIYRLSDSYY
HVAAGDVIYLAPFVLQWYAALGTQPTRYFLYKDTNVDPLLHNNCPGVV*
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mRNA from alignment at tig00000842_pilon:625819..626742-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5509.t1 ID=Ggra5509.t1|Name=Ggra5509.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000842_pilon:625819..626742- (Gracilaria gracilis GNS1m male)
ATGCATACCGATCCGCCGCGTTTTCCGTCCGTCGTTGTTGCAATCGTCGC
TTTTCTCATCGCCGCCCGTGTCAATGCGTGCGAGACGTGTTCGGAATGTG
ATGCTTACGACTACCTCGAGGCTGCTATCCCGTCTTCACAGCTGCTTCCG
GGCGAGACCCGTTCCGTCTTCGCGCCCCATTCTCACGCGCTCATTGCGCC
CGATTCGCGCGTGTACAGCGCTCCGCCGCCCGGATGGAGCGGATCACTTA
ATGCTGCCGCCGTCGTCACGCCTGCGCTAGGCGCGCATTTCAGTATGTAC
TTGGTGAACGCCTCTGCCTCTGCAGCGTTAGCACACCCCGTAACCTTTTC
ATCCGCTGCTCCCAATCTGGAGCGATTGATTTATGTCTTGTGTGGATCTC
TTAGTGTTAGTAATCATTCTGTCGTCACGTCGCTCACACCTGGTTCGTTT
GTGTACATTGCGCCGCAAGACGACTCTCTGTCTATTGTCGTTCCGACCGA
CGCGCAGTTTGTTCAAATTGACCGCGTCAAGGCTATCAAACATGCTGCAC
CTTCCGTCATCGGCTCCGAAAGCGAAGTAAACCCAGAACTGGTTGCCGGC
GAAGTATTTGAACTTCGTCGTTTGCTGGACGCTTCTAATCCGGCATACGA
TTTCAACATTCACATCATGGACTTTAATCCAGGAGAATATCTTAACGTTA
AGGAAGTGCACTATAATCAACATGGACTTCTTATGCTCCAAGGGCAGGGA
ATCTACCGTCTTTCTGATTCTTATTATCATGTTGCTGCCGGGGACGTCAT
ATATTTGGCTCCATTTGTCCTGCAGTGGTACGCTGCTCTTGGAACCCAGC
CTACCCGATACTTCCTCTACAAAGATACCAACGTTGACCCCTTACTTCAC
AACAACTGTCCAGGCGTCGTATAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:625819..626742-

>Ggra5509.t1 ID=Ggra5509.t1|Name=Ggra5509.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=747bp|location=Sequence derived from alignment at tig00000842_pilon:625819..626742- (Gracilaria gracilis GNS1m male)
ATGCATACCGATCCGCCGCGTTTTCCGTCCGTCGTTGTTGCAATCGTCGC
TTTTCTCATCGCCGCCCGTGTCAATGCGTGCGAGACGTGTTCGGAATGTG
ATGCTTACGACTACCTCGAGGCTGCTATCCCGTCTTCACAGCTGCTTCCG
GGCGAGACCCGTTCCGTCTTCGCGCCCCATTCTCACGCGCTCATTGCGCC
CGATTCGCGCGTGTACAGCGCTCCGCCGCCCGGATGGAGCGGATCACTTA
ATGCTGCCGCCGTCGTCACGCCTGCGCTAGGCGCGCATTTCAACGACTCT
CTGTCTATTGTCGTTCCGACCGACGCGCAGTTTGTTCAAATTGACCGCGT
CAAGGCTATCAAACATGCTGCACCTTCCGTCATCGGCTCCGAAAGCGAAG
TAAACCCAGAACTGGTTGCCGGCGAAGTATTTGAACTTCGTCGTTTGCTG
GACGCTTCTAATCCGGCATACGATTTCAACATTCACATCATGGACTTTAA
TCCAGGAGAATATCTTAACGTTAAGGAAGTGCACTATAATCAACATGGAC
TTCTTATGCTCCAAGGGCAGGGAATCTACCGTCTTTCTGATTCTTATTAT
CATGTTGCTGCCGGGGACGTCATATATTTGGCTCCATTTGTCCTGCAGTG
GTACGCTGCTCTTGGAACCCAGCCTACCCGATACTTCCTCTACAAAGATA
CCAACGTTGACCCCTTACTTCACAACAACTGTCCAGGCGTCGTATAA
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