Ggra5491.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5491.t1
Unique NameGgra5491.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:452715..453722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7070.TC003021-PA
Preferred nameHNRNPU
PFAMsAAA_33,SAP,SPRY
Max annot lvl33208|Metazoa
KEGG koko:K12888,ko:K15047,ko:K15698
KEGG Pathwayko03040,ko05164,map03040,map05164
GOsGO:0000122,GO:0000166,GO:0000228,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000775,GO:0000776,GO:0000803,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0000993,GO:0001012,GO:0001067,GO:0001085,GO:0001091,GO:0001097,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003712,GO:0003714,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0003730,GO:0003779,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005697,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0007507,GO:0007549,GO:0007623,GO:0008092,GO:0008104,GO:0008134,GO:0008143,GO:0008144,GO:0008150,GO:0008152,GO:0008187,GO:0008284,GO:0008380,GO:0009048,GO:0009410,GO:0009605,GO:0009607,GO:0009615,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009986,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010911,GO:0010912,GO:0014070,GO:0014706,GO:0015630,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0017069,GO:0017076,GO:0017130,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0030154,GO:0030496,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031490,GO:0031960,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032501,GO:0032502,GO:0032507,GO:0032553,GO:0032555,GO:0032559,GO:0032781,GO:0032784,GO:0032785,GO:0032870,GO:0032879,GO:0032886,GO:0032922,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0033673,GO:0033993,GO:0034046,GO:0034097,GO:0034243,GO:0034244,GO:0034399,GO:0034504,GO:0034613,GO:0034641,GO:0035051,GO:0035372,GO:0035639,GO:0035690,GO:0035770,GO:0036002,GO:0036094,GO:0036464,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042692,GO:0042802,GO:0043021,GO:0043085,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043175,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043484,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0043565,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045185,GO:0045595,GO:0045596,GO:0045597,GO:0045598,GO:0045600,GO:0045787,GO:0045840,GO:0045892,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048024,GO:0048255,GO:0048468,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048731,GO:0048738,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051233,GO:0051235,GO:0051252,GO:0051253,GO:0051254,GO:0051336,GO:0051338,GO:0051345,GO:0051348,GO:0051384,GO:0051457,GO:0051493,GO:0051641,GO:0051651,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0051987,GO:0051988,GO:0055001,GO:0055002,GO:0055006,GO:0055007,GO:0055013,GO:0060236,GO:0060255,GO:0060341,GO:0060537,GO:0061013,GO:0061061,GO:0062033,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070063,GO:0070507,GO:0070717,GO:0070727,GO:0070887,GO:0070934,GO:0070937,GO:0071013,GO:0071310,GO:0071345,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0072091,GO:0072359,GO:0072595,GO:0072686,GO:0072698,GO:0080090,GO:0090068,GO:0090169,GO:0090224,GO:0090235,GO:0090304,GO:0090335,GO:0090336,GO:0097159,GO:0097327,GO:0097367,GO:0098577,GO:0098687,GO:0099080,GO:0099081,GO:0099122,GO:0099512,GO:0099513,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901654,GO:1901655,GO:1901673,GO:1901700,GO:1901701,GO:1902115,GO:1902275,GO:1902369,GO:1902373,GO:1902423,GO:1902425,GO:1902494,GO:1902679,GO:1902680,GO:1902889,GO:1903311,GO:1903312,GO:1903506,GO:1903507,GO:1903508,GO:1904356,GO:1904357,GO:1990023,GO:1990280,GO:1990498,GO:1990823,GO:1990830,GO:1990837,GO:1990841,GO:1990845,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000371,GO:2000373,GO:2000648,GO:2000736,GO:2000737,GO:2001141,GO:2001251,GO:2001252
Evalue0.000821
EggNOG OGsKOG2242@1|root,KOG2242@2759|Eukaryota,38FNX@33154|Opisthokonta,3BD0H@33208|Metazoa,3CRCQ@33213|Bilateria,41UDC@6656|Arthropoda,3SJHR@50557|Insecta
DescriptionPutative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
COG categoryA
BRITEko00000,ko00001,ko03041,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5491Ggra5491Gracilaria gracilis GNS1m malegenetig00000842_pilon 452715..453722 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5491.t1.start1Ggra5491.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 452715..452717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5491.t1.CDS1Ggra5491.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 452715..453722 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5491.t1.exon1Ggra5491.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 452715..453722 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5491.t1.stop1Ggra5491.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 453720..453722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5491.t1Ggra5491.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 452715..453722 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5491.t1 ID=Ggra5491.t1|Name=Ggra5491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp
MKLSKLRVAELRKHLKARGLDDKGNRPALIKRLREALENEQNAKTVEDKP
VDPSNQDDDEPTTIDENRAGSTSQKPAPEDNDVAKGRPKTERTYKRKLQD
RVEPEGRSPKRQYTANGNGGNGSSATQFVPKNSSPPRRQYRSKKVGEENA
VHEKPQADRIPVQEQTSKAVERSEGVSSNAPEAGRNGVKNLDKDSTGAAD
ASGQTKRRESPSKDPEPAELKSAGSMQIADDASSAERIRRRKERFGIVIK
EAAGGDPTDEEAVRKRRARFGTLAVMNNSSKIPQSAQQERDEAALRRRAE
KFGLNVRERVPADATLSKDEVEKRLRRQKRFQSVS*
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spliced messenger RNA

>Ggra5491.t1 ID=Ggra5491.t1|Name=Ggra5491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000842_pilon:452715..453722+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTATCCAAACTACGCGTCGCCGAATTGCGGAAACATCTCAAGGC
CCGAGGCCTTGATGATAAAGGGAATCGCCCTGCCCTCATCAAACGACTGC
GCGAGGCGCTCGAAAATGAGCAGAATGCCAAAACTGTGGAAGACAAACCA
GTTGATCCTTCAAATCAAGACGACGATGAGCCGACAACCATAGACGAGAA
TCGCGCTGGTTCTACATCCCAAAAGCCTGCCCCGGAGGACAATGACGTGG
CGAAAGGACGCCCGAAGACGGAGAGGACGTATAAGCGTAAGCTGCAGGAC
AGGGTTGAACCTGAAGGCCGTAGCCCAAAACGCCAATATACGGCAAACGG
CAACGGCGGCAACGGTTCTTCAGCCACCCAATTTGTCCCAAAGAATTCCT
CCCCACCCCGACGTCAATACCGATCAAAGAAAGTCGGGGAGGAGAATGCC
GTCCACGAAAAGCCACAAGCCGATCGTATTCCGGTCCAAGAGCAAACGTC
GAAAGCAGTTGAACGAAGTGAGGGGGTCTCTTCTAATGCACCCGAAGCTG
GTAGAAACGGTGTGAAGAATCTTGACAAGGATTCAACTGGAGCTGCGGAT
GCAAGTGGGCAAACCAAAAGGAGAGAGTCGCCCAGCAAGGATCCTGAACC
GGCCGAACTCAAGTCCGCTGGTAGTATGCAGATTGCAGATGATGCATCTT
CAGCTGAACGCATACGTCGCAGGAAGGAGCGATTCGGGATTGTCATTAAG
GAGGCGGCAGGCGGCGATCCCACCGATGAAGAAGCTGTACGGAAGAGACG
TGCACGCTTTGGGACCCTAGCCGTAATGAACAATTCGTCTAAGATTCCGC
AATCTGCTCAGCAAGAACGCGATGAAGCTGCATTACGTCGCCGAGCAGAA
AAATTTGGGCTGAATGTCAGGGAGCGGGTCCCAGCTGACGCTACTTTGTC
CAAGGACGAAGTGGAGAAACGACTTCGGCGTCAGAAGAGGTTTCAAAGCG
TTTCCTGA
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protein sequence of Ggra5491.t1

>Ggra5491.t1 ID=Ggra5491.t1|Name=Ggra5491.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=336bp
MKLSKLRVAELRKHLKARGLDDKGNRPALIKRLREALENEQNAKTVEDKP
VDPSNQDDDEPTTIDENRAGSTSQKPAPEDNDVAKGRPKTERTYKRKLQD
RVEPEGRSPKRQYTANGNGGNGSSATQFVPKNSSPPRRQYRSKKVGEENA
VHEKPQADRIPVQEQTSKAVERSEGVSSNAPEAGRNGVKNLDKDSTGAAD
ASGQTKRRESPSKDPEPAELKSAGSMQIADDASSAERIRRRKERFGIVIK
EAAGGDPTDEEAVRKRRARFGTLAVMNNSSKIPQSAQQERDEAALRRRAE
KFGLNVRERVPADATLSKDEVEKRLRRQKRFQSVS*
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mRNA from alignment at tig00000842_pilon:452715..453722+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5491.t1 ID=Ggra5491.t1|Name=Ggra5491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000842_pilon:452715..453722+ (Gracilaria gracilis GNS1m male)
ATGAAACTATCCAAACTACGCGTCGCCGAATTGCGGAAACATCTCAAGGC
CCGAGGCCTTGATGATAAAGGGAATCGCCCTGCCCTCATCAAACGACTGC
GCGAGGCGCTCGAAAATGAGCAGAATGCCAAAACTGTGGAAGACAAACCA
GTTGATCCTTCAAATCAAGACGACGATGAGCCGACAACCATAGACGAGAA
TCGCGCTGGTTCTACATCCCAAAAGCCTGCCCCGGAGGACAATGACGTGG
CGAAAGGACGCCCGAAGACGGAGAGGACGTATAAGCGTAAGCTGCAGGAC
AGGGTTGAACCTGAAGGCCGTAGCCCAAAACGCCAATATACGGCAAACGG
CAACGGCGGCAACGGTTCTTCAGCCACCCAATTTGTCCCAAAGAATTCCT
CCCCACCCCGACGTCAATACCGATCAAAGAAAGTCGGGGAGGAGAATGCC
GTCCACGAAAAGCCACAAGCCGATCGTATTCCGGTCCAAGAGCAAACGTC
GAAAGCAGTTGAACGAAGTGAGGGGGTCTCTTCTAATGCACCCGAAGCTG
GTAGAAACGGTGTGAAGAATCTTGACAAGGATTCAACTGGAGCTGCGGAT
GCAAGTGGGCAAACCAAAAGGAGAGAGTCGCCCAGCAAGGATCCTGAACC
GGCCGAACTCAAGTCCGCTGGTAGTATGCAGATTGCAGATGATGCATCTT
CAGCTGAACGCATACGTCGCAGGAAGGAGCGATTCGGGATTGTCATTAAG
GAGGCGGCAGGCGGCGATCCCACCGATGAAGAAGCTGTACGGAAGAGACG
TGCACGCTTTGGGACCCTAGCCGTAATGAACAATTCGTCTAAGATTCCGC
AATCTGCTCAGCAAGAACGCGATGAAGCTGCATTACGTCGCCGAGCAGAA
AAATTTGGGCTGAATGTCAGGGAGCGGGTCCCAGCTGACGCTACTTTGTC
CAAGGACGAAGTGGAGAAACGACTTCGGCGTCAGAAGAGGTTTCAAAGCG
TTTCCTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:452715..453722+

>Ggra5491.t1 ID=Ggra5491.t1|Name=Ggra5491.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000842_pilon:452715..453722+ (Gracilaria gracilis GNS1m male)
ATGAAACTATCCAAACTACGCGTCGCCGAATTGCGGAAACATCTCAAGGC
CCGAGGCCTTGATGATAAAGGGAATCGCCCTGCCCTCATCAAACGACTGC
GCGAGGCGCTCGAAAATGAGCAGAATGCCAAAACTGTGGAAGACAAACCA
GTTGATCCTTCAAATCAAGACGACGATGAGCCGACAACCATAGACGAGAA
TCGCGCTGGTTCTACATCCCAAAAGCCTGCCCCGGAGGACAATGACGTGG
CGAAAGGACGCCCGAAGACGGAGAGGACGTATAAGCGTAAGCTGCAGGAC
AGGGTTGAACCTGAAGGCCGTAGCCCAAAACGCCAATATACGGCAAACGG
CAACGGCGGCAACGGTTCTTCAGCCACCCAATTTGTCCCAAAGAATTCCT
CCCCACCCCGACGTCAATACCGATCAAAGAAAGTCGGGGAGGAGAATGCC
GTCCACGAAAAGCCACAAGCCGATCGTATTCCGGTCCAAGAGCAAACGTC
GAAAGCAGTTGAACGAAGTGAGGGGGTCTCTTCTAATGCACCCGAAGCTG
GTAGAAACGGTGTGAAGAATCTTGACAAGGATTCAACTGGAGCTGCGGAT
GCAAGTGGGCAAACCAAAAGGAGAGAGTCGCCCAGCAAGGATCCTGAACC
GGCCGAACTCAAGTCCGCTGGTAGTATGCAGATTGCAGATGATGCATCTT
CAGCTGAACGCATACGTCGCAGGAAGGAGCGATTCGGGATTGTCATTAAG
GAGGCGGCAGGCGGCGATCCCACCGATGAAGAAGCTGTACGGAAGAGACG
TGCACGCTTTGGGACCCTAGCCGTAATGAACAATTCGTCTAAGATTCCGC
AATCTGCTCAGCAAGAACGCGATGAAGCTGCATTACGTCGCCGAGCAGAA
AAATTTGGGCTGAATGTCAGGGAGCGGGTCCCAGCTGACGCTACTTTGTC
CAAGGACGAAGTGGAGAAACGACTTCGGCGTCAGAAGAGGTTTCAAAGCG
TTTCCTGA
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