Ggra5477.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5477.t1
Unique NameGgra5477.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length68
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:414055..414474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5477Ggra5477Gracilaria gracilis GNS1m malegenetig00000842_pilon 414055..414474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5477.t1Ggra5477.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 414055..414474 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5477.t1.start1Ggra5477.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 414055..414057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5477.t1.CDS1Ggra5477.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 414055..414072 +
Ggra5477.t1.CDS2Ggra5477.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 414213..414368 +
Ggra5477.t1.CDS3Ggra5477.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 414445..414474 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5477.t1.exon1Ggra5477.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 414055..414072 +
Ggra5477.t1.exon2Ggra5477.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 414213..414368 +
Ggra5477.t1.exon3Ggra5477.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 414445..414474 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5477.t1.intron1Ggra5477.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 414073..414212 +
Ggra5477.t1.intron2Ggra5477.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 414369..414444 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5477.t1.stop1Ggra5477.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 414472..414474 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5477.t1 ID=Ggra5477.t1|Name=Ggra5477.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=68bp
MDVRLGCDHLPARTSRDSPLVPQPRNLNRVATGSIDDDKSLSAPQLIARN
DVANGDLHCSPSGRFIF*
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spliced messenger RNA

>Ggra5477.t1 ID=Ggra5477.t1|Name=Ggra5477.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=204bp|location=Sequence derived from alignment at tig00000842_pilon:414055..414474+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTTCGATTGGGGTGTGACCATCTACCAGCGAGAACCTCGAGGGA
TAGCCCTCTTGTGCCCCAACCCCGTAACCTGAACCGAGTCGCCACAGGAA
GCATTGATGACGACAAATCTCTTTCTGCCCCGCAACTTATCGCACGCAAT
GACGTGGCTAACGGAGATCTTCATTGTTCACCTTCTGGACGATTCATATT
TTAG
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protein sequence of Ggra5477.t1

>Ggra5477.t1 ID=Ggra5477.t1|Name=Ggra5477.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=68bp
MDVRLGCDHLPARTSRDSPLVPQPRNLNRVATGSIDDDKSLSAPQLIARN
DVANGDLHCSPSGRFIF*
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mRNA from alignment at tig00000842_pilon:414055..414474+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5477.t1 ID=Ggra5477.t1|Name=Ggra5477.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00000842_pilon:414055..414474+ (Gracilaria gracilis GNS1m male)
ATGGATGTTCGATTGGGGGTAAGAGCGCAATCGCTCAGCTTTTGCATTTG
TTTGGCTGTCTGCAACTGTTAGACACGTACCAACGTCTAAGCAAATATCC
GGCCCTATTCGCACTACCATTCCGGCTTTCGGCAATACAGTATTGCGACG
CATAACAGTGTGACCATCTACCAGCGAGAACCTCGAGGGATAGCCCTCTT
GTGCCCCAACCCCGTAACCTGAACCGAGTCGCCACAGGAAGCATTGATGA
CGACAAATCTCTTTCTGCCCCGCAACTTATCGCACGCAATGACGTGGCTA
ACGGAGATCTTCATGTAAGCATATATAGCATGTATTCCCGGCAAATTCAA
AAGCATTCCTGACTGGGCGATCATTATCACCTTCAAGTAGTGTTCACCTT
CTGGACGATTCATATTTTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:414055..414474+

>Ggra5477.t1 ID=Ggra5477.t1|Name=Ggra5477.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=204bp|location=Sequence derived from alignment at tig00000842_pilon:414055..414474+ (Gracilaria gracilis GNS1m male)
ATGGATGTTCGATTGGGGTGTGACCATCTACCAGCGAGAACCTCGAGGGA
TAGCCCTCTTGTGCCCCAACCCCGTAACCTGAACCGAGTCGCCACAGGAA
GCATTGATGACGACAAATCTCTTTCTGCCCCGCAACTTATCGCACGCAAT
GACGTGGCTAACGGAGATCTTCATTGTTCACCTTCTGGACGATTCATATT
TTAG
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