Ggra5472.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5472.t1
Unique NameGgra5472.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:397805..399433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1312959.KI914671_gene3420
Max annot lvl201174|Actinobacteria
Evalue1.09e-135
EggNOG OGsCOG0535@1|root,COG0535@2|Bacteria,2HP1A@201174|Actinobacteria
Descriptionradical SAM domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5472Ggra5472Gracilaria gracilis GNS1m malegenetig00000842_pilon 397805..399433 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5472.t1.stop1Ggra5472.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 397805..397807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5472.t1.CDS1Ggra5472.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 397805..399433 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5472.t1.exon1Ggra5472.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 397805..399433 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5472.t1.start1Ggra5472.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 399431..399433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5472.t1Ggra5472.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 397805..399433 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5472.t1 ID=Ggra5472.t1|Name=Ggra5472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp
MTASAFVSSSPLPLGAAKSLTPRRTCMTVAPPRPAAADRGANTNDRHSLH
ARFHAFLSSLARVEALSRPATLSSQARYDALPPHAKTPSQMIGRVSPGCE
GTKGVFPRCNFACKPCYHSSTANSVRVDGAHTLVQIARQMQLLQQERGPS
AHCQLIGGEVSLLSPEDHAMALETMRFFGRIPMSFTHGDFDYDYLERLAL
DKTNRPRFDRLDFAVHFDMGMRGRRGAAHVRSEMDLMPFRQRFMHMFERL
RQEHGVGYYIAHNMTVQPSNLSHVAEAVRQMKSMGFRMMSFQPAALQGAE
KRRVSNLRTIADDHGQIVWDEIEKGMGMRLPYSLFQMGDERCTRTCVCGV
VGPRSKKKDKHIFLFFDDQCPEDVRVRDLIMSEFGNAVLKPPVLLLKLIR
TVLAKPWLLIPAFSYLTRMLKRAGGLWAVLRHGVEPLFIVMHRFMDADDV
KKAWDFMERGVAPDDSRVEAAGPRIRETMERLDSCAYSMAQPERERVVPA
CVQHSVYDPEENIELAQELPLRQPARSASEVNLDLSKESSRF*
back to top

spliced messenger RNA

>Ggra5472.t1 ID=Ggra5472.t1|Name=Ggra5472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000842_pilon:397805..399433- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCGTCTGCATTCGTCTCGTCCTCGCCGTTGCCGCTCGGCGCCGC
CAAGTCGCTCACTCCCCGCCGCACCTGCATGACCGTCGCGCCGCCTCGCC
CAGCCGCTGCCGACCGTGGTGCCAATACCAATGACCGACACAGTCTTCAC
GCTCGCTTCCACGCCTTTCTCTCCTCACTTGCCCGCGTCGAGGCACTCTC
GCGTCCCGCCACCCTGTCCAGCCAAGCTCGTTACGATGCGCTCCCGCCGC
ACGCGAAGACGCCCTCTCAGATGATCGGTCGTGTCTCACCGGGCTGCGAG
GGCACAAAGGGTGTCTTTCCGCGTTGCAACTTTGCCTGTAAACCATGCTA
TCATTCATCCACAGCCAACTCCGTGCGTGTAGATGGCGCCCACACCCTCG
TGCAGATTGCGCGTCAGATGCAACTTCTGCAACAAGAACGCGGTCCCTCG
GCACATTGCCAGCTCATCGGCGGCGAGGTGTCTTTGCTCTCTCCGGAAGA
CCATGCTATGGCTTTGGAAACTATGCGCTTCTTTGGTCGCATTCCGATGA
GCTTCACACATGGCGATTTCGACTATGACTACCTGGAGCGCCTGGCCTTG
GACAAAACCAATCGCCCGCGCTTTGATCGTCTAGACTTTGCAGTGCACTT
CGATATGGGCATGCGCGGCCGTCGGGGCGCTGCGCATGTGCGCAGTGAAA
TGGACCTCATGCCCTTCCGCCAACGCTTCATGCACATGTTTGAACGACTA
CGTCAAGAGCATGGCGTGGGCTATTACATAGCTCACAACATGACCGTCCA
GCCATCCAATCTTTCACATGTAGCCGAGGCGGTGCGTCAGATGAAATCCA
TGGGCTTTCGCATGATGTCCTTCCAGCCTGCTGCTCTGCAAGGCGCGGAG
AAGCGTCGTGTTTCCAATCTTCGTACCATCGCCGATGACCATGGCCAGAT
TGTGTGGGACGAGATAGAAAAGGGCATGGGTATGCGCCTCCCATATTCTC
TCTTTCAGATGGGCGATGAACGCTGCACACGCACGTGCGTTTGTGGCGTT
GTCGGACCCCGCTCGAAAAAGAAGGACAAACATATCTTTTTGTTCTTCGA
TGACCAGTGTCCCGAAGACGTGCGCGTTCGCGATCTCATTATGTCCGAGT
TTGGCAACGCCGTTCTGAAACCACCGGTCCTGCTGTTGAAACTGATTCGC
ACTGTCCTTGCCAAGCCATGGCTTCTGATCCCGGCATTTTCGTATCTGAC
CCGTATGCTGAAGAGGGCCGGCGGACTTTGGGCTGTCTTGCGTCACGGCG
TGGAACCACTTTTCATTGTTATGCATCGATTCATGGATGCTGATGACGTC
AAGAAGGCATGGGATTTCATGGAGCGCGGGGTGGCACCGGATGATTCTAG
AGTCGAAGCGGCTGGACCGCGTATCCGGGAGACTATGGAACGTTTGGATT
CGTGTGCATATAGTATGGCACAACCTGAGCGAGAAAGAGTGGTGCCTGCA
TGCGTGCAACACAGTGTATATGACCCAGAAGAAAATATTGAACTCGCACA
AGAACTTCCTTTGCGGCAGCCCGCCAGATCAGCTTCTGAGGTGAACTTGG
ACCTTTCCAAGGAGTCGAGCCGATTTTGA
back to top

protein sequence of Ggra5472.t1

>Ggra5472.t1 ID=Ggra5472.t1|Name=Ggra5472.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=543bp
MTASAFVSSSPLPLGAAKSLTPRRTCMTVAPPRPAAADRGANTNDRHSLH
ARFHAFLSSLARVEALSRPATLSSQARYDALPPHAKTPSQMIGRVSPGCE
GTKGVFPRCNFACKPCYHSSTANSVRVDGAHTLVQIARQMQLLQQERGPS
AHCQLIGGEVSLLSPEDHAMALETMRFFGRIPMSFTHGDFDYDYLERLAL
DKTNRPRFDRLDFAVHFDMGMRGRRGAAHVRSEMDLMPFRQRFMHMFERL
RQEHGVGYYIAHNMTVQPSNLSHVAEAVRQMKSMGFRMMSFQPAALQGAE
KRRVSNLRTIADDHGQIVWDEIEKGMGMRLPYSLFQMGDERCTRTCVCGV
VGPRSKKKDKHIFLFFDDQCPEDVRVRDLIMSEFGNAVLKPPVLLLKLIR
TVLAKPWLLIPAFSYLTRMLKRAGGLWAVLRHGVEPLFIVMHRFMDADDV
KKAWDFMERGVAPDDSRVEAAGPRIRETMERLDSCAYSMAQPERERVVPA
CVQHSVYDPEENIELAQELPLRQPARSASEVNLDLSKESSRF*
back to top

mRNA from alignment at tig00000842_pilon:397805..399433-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5472.t1 ID=Ggra5472.t1|Name=Ggra5472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000842_pilon:397805..399433- (Gracilaria gracilis GNS1m male)
ATGACCGCGTCTGCATTCGTCTCGTCCTCGCCGTTGCCGCTCGGCGCCGC
CAAGTCGCTCACTCCCCGCCGCACCTGCATGACCGTCGCGCCGCCTCGCC
CAGCCGCTGCCGACCGTGGTGCCAATACCAATGACCGACACAGTCTTCAC
GCTCGCTTCCACGCCTTTCTCTCCTCACTTGCCCGCGTCGAGGCACTCTC
GCGTCCCGCCACCCTGTCCAGCCAAGCTCGTTACGATGCGCTCCCGCCGC
ACGCGAAGACGCCCTCTCAGATGATCGGTCGTGTCTCACCGGGCTGCGAG
GGCACAAAGGGTGTCTTTCCGCGTTGCAACTTTGCCTGTAAACCATGCTA
TCATTCATCCACAGCCAACTCCGTGCGTGTAGATGGCGCCCACACCCTCG
TGCAGATTGCGCGTCAGATGCAACTTCTGCAACAAGAACGCGGTCCCTCG
GCACATTGCCAGCTCATCGGCGGCGAGGTGTCTTTGCTCTCTCCGGAAGA
CCATGCTATGGCTTTGGAAACTATGCGCTTCTTTGGTCGCATTCCGATGA
GCTTCACACATGGCGATTTCGACTATGACTACCTGGAGCGCCTGGCCTTG
GACAAAACCAATCGCCCGCGCTTTGATCGTCTAGACTTTGCAGTGCACTT
CGATATGGGCATGCGCGGCCGTCGGGGCGCTGCGCATGTGCGCAGTGAAA
TGGACCTCATGCCCTTCCGCCAACGCTTCATGCACATGTTTGAACGACTA
CGTCAAGAGCATGGCGTGGGCTATTACATAGCTCACAACATGACCGTCCA
GCCATCCAATCTTTCACATGTAGCCGAGGCGGTGCGTCAGATGAAATCCA
TGGGCTTTCGCATGATGTCCTTCCAGCCTGCTGCTCTGCAAGGCGCGGAG
AAGCGTCGTGTTTCCAATCTTCGTACCATCGCCGATGACCATGGCCAGAT
TGTGTGGGACGAGATAGAAAAGGGCATGGGTATGCGCCTCCCATATTCTC
TCTTTCAGATGGGCGATGAACGCTGCACACGCACGTGCGTTTGTGGCGTT
GTCGGACCCCGCTCGAAAAAGAAGGACAAACATATCTTTTTGTTCTTCGA
TGACCAGTGTCCCGAAGACGTGCGCGTTCGCGATCTCATTATGTCCGAGT
TTGGCAACGCCGTTCTGAAACCACCGGTCCTGCTGTTGAAACTGATTCGC
ACTGTCCTTGCCAAGCCATGGCTTCTGATCCCGGCATTTTCGTATCTGAC
CCGTATGCTGAAGAGGGCCGGCGGACTTTGGGCTGTCTTGCGTCACGGCG
TGGAACCACTTTTCATTGTTATGCATCGATTCATGGATGCTGATGACGTC
AAGAAGGCATGGGATTTCATGGAGCGCGGGGTGGCACCGGATGATTCTAG
AGTCGAAGCGGCTGGACCGCGTATCCGGGAGACTATGGAACGTTTGGATT
CGTGTGCATATAGTATGGCACAACCTGAGCGAGAAAGAGTGGTGCCTGCA
TGCGTGCAACACAGTGTATATGACCCAGAAGAAAATATTGAACTCGCACA
AGAACTTCCTTTGCGGCAGCCCGCCAGATCAGCTTCTGAGGTGAACTTGG
ACCTTTCCAAGGAGTCGAGCCGATTTTGA
back to top

Coding sequence (CDS) from alignment at tig00000842_pilon:397805..399433-

>Ggra5472.t1 ID=Ggra5472.t1|Name=Ggra5472.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00000842_pilon:397805..399433- (Gracilaria gracilis GNS1m male)
ATGACCGCGTCTGCATTCGTCTCGTCCTCGCCGTTGCCGCTCGGCGCCGC
CAAGTCGCTCACTCCCCGCCGCACCTGCATGACCGTCGCGCCGCCTCGCC
CAGCCGCTGCCGACCGTGGTGCCAATACCAATGACCGACACAGTCTTCAC
GCTCGCTTCCACGCCTTTCTCTCCTCACTTGCCCGCGTCGAGGCACTCTC
GCGTCCCGCCACCCTGTCCAGCCAAGCTCGTTACGATGCGCTCCCGCCGC
ACGCGAAGACGCCCTCTCAGATGATCGGTCGTGTCTCACCGGGCTGCGAG
GGCACAAAGGGTGTCTTTCCGCGTTGCAACTTTGCCTGTAAACCATGCTA
TCATTCATCCACAGCCAACTCCGTGCGTGTAGATGGCGCCCACACCCTCG
TGCAGATTGCGCGTCAGATGCAACTTCTGCAACAAGAACGCGGTCCCTCG
GCACATTGCCAGCTCATCGGCGGCGAGGTGTCTTTGCTCTCTCCGGAAGA
CCATGCTATGGCTTTGGAAACTATGCGCTTCTTTGGTCGCATTCCGATGA
GCTTCACACATGGCGATTTCGACTATGACTACCTGGAGCGCCTGGCCTTG
GACAAAACCAATCGCCCGCGCTTTGATCGTCTAGACTTTGCAGTGCACTT
CGATATGGGCATGCGCGGCCGTCGGGGCGCTGCGCATGTGCGCAGTGAAA
TGGACCTCATGCCCTTCCGCCAACGCTTCATGCACATGTTTGAACGACTA
CGTCAAGAGCATGGCGTGGGCTATTACATAGCTCACAACATGACCGTCCA
GCCATCCAATCTTTCACATGTAGCCGAGGCGGTGCGTCAGATGAAATCCA
TGGGCTTTCGCATGATGTCCTTCCAGCCTGCTGCTCTGCAAGGCGCGGAG
AAGCGTCGTGTTTCCAATCTTCGTACCATCGCCGATGACCATGGCCAGAT
TGTGTGGGACGAGATAGAAAAGGGCATGGGTATGCGCCTCCCATATTCTC
TCTTTCAGATGGGCGATGAACGCTGCACACGCACGTGCGTTTGTGGCGTT
GTCGGACCCCGCTCGAAAAAGAAGGACAAACATATCTTTTTGTTCTTCGA
TGACCAGTGTCCCGAAGACGTGCGCGTTCGCGATCTCATTATGTCCGAGT
TTGGCAACGCCGTTCTGAAACCACCGGTCCTGCTGTTGAAACTGATTCGC
ACTGTCCTTGCCAAGCCATGGCTTCTGATCCCGGCATTTTCGTATCTGAC
CCGTATGCTGAAGAGGGCCGGCGGACTTTGGGCTGTCTTGCGTCACGGCG
TGGAACCACTTTTCATTGTTATGCATCGATTCATGGATGCTGATGACGTC
AAGAAGGCATGGGATTTCATGGAGCGCGGGGTGGCACCGGATGATTCTAG
AGTCGAAGCGGCTGGACCGCGTATCCGGGAGACTATGGAACGTTTGGATT
CGTGTGCATATAGTATGGCACAACCTGAGCGAGAAAGAGTGGTGCCTGCA
TGCGTGCAACACAGTGTATATGACCCAGAAGAAAATATTGAACTCGCACA
AGAACTTCCTTTGCGGCAGCCCGCCAGATCAGCTTCTGAGGTGAACTTGG
ACCTTTCCAAGGAGTCGAGCCGATTTTGA
back to top