Ggra5461.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5461.t1
Unique NameGgra5461.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:366631..368052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5461Ggra5461Gracilaria gracilis GNS1m malegenetig00000842_pilon 366631..368052 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5461.t1.stop1Ggra5461.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 366631..366633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5461.t1.CDS1Ggra5461.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 366631..368052 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5461.t1.exon1Ggra5461.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 366631..368052 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5461.t1.start1Ggra5461.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 368050..368052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5461.t1Ggra5461.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 366631..368052 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5461.t1 ID=Ggra5461.t1|Name=Ggra5461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MSAAPRVSACAHASSLPAAFFDNARRTSTDDDRRVHSQRCLLARALLLAS
QHRWVADWLFSDPHARFHANLPVPLSAFDNAHPLSIMHLFEGEGYSRRLA
SSMLVVPIATMNSICVGYTVSQGSNEQRNVGRCAFHSGSREMLLVVNYYS
PTITAVMSVIPHAHTVKQFLFTCPAEQYSFSNLPNQVHTLHVGEREPVAT
TAVSQAAPQSQPLPNSIDHFLSLWPQNDCALPSSEQPSSSLPLVDFDFDA
PSQLPWIIDDTCTLSDNVGIPANPGIAETSSGAFNLTALSTAIRHIESTL
QGRFLGCAESNFPLAATQGAPIEQTVVSINTAEPLEAKLLRRYAVNVYFD
ATIAAVSDEKLLSLAPACARAEDAPRARRIAPSATSATGVTADVGGAKAD
AAHERMLEARRRRNRLSAARSNERRKENWRRNVQMLGELKRRVEELRSRQ
ERLLEENGVLRTQVGRGGAAIQR*
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spliced messenger RNA

>Ggra5461.t1 ID=Ggra5461.t1|Name=Ggra5461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000842_pilon:366631..368052- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCCGCGCCGCGAGTTTCTGCCTGCGCGCATGCGTCGTCGCTGCC
TGCCGCCTTCTTCGACAACGCCAGACGCACCAGCACGGACGATGACCGCC
GCGTTCACTCGCAGCGTTGCTTGTTGGCGCGCGCTTTGCTGCTGGCTTCG
CAGCACCGCTGGGTGGCCGACTGGCTCTTTTCGGATCCGCATGCCAGGTT
CCATGCCAATCTGCCTGTGCCGCTTTCCGCCTTCGACAATGCACACCCGC
TGTCCATCATGCATCTGTTTGAGGGTGAAGGCTATAGTCGCCGACTCGCG
TCCAGTATGCTCGTGGTGCCCATCGCCACTATGAATTCCATATGCGTTGG
ATACACCGTTTCGCAGGGATCTAACGAGCAGCGTAACGTCGGCCGCTGTG
CGTTTCATTCCGGCTCTCGCGAGATGCTGTTGGTCGTTAATTATTACTCG
CCTACCATCACTGCAGTTATGTCTGTTATTCCACACGCGCACACCGTTAA
ACAGTTCCTCTTCACTTGCCCGGCCGAACAATACAGCTTCAGTAACCTTC
CTAACCAGGTGCACACCCTGCATGTTGGCGAACGCGAACCAGTTGCCACC
ACAGCTGTGTCCCAAGCAGCGCCCCAATCACAACCGCTACCTAACTCTAT
CGACCACTTTCTCTCACTGTGGCCGCAAAACGACTGCGCGCTACCGTCGA
GTGAGCAGCCGTCCTCCTCTCTCCCCCTGGTCGACTTTGACTTTGACGCG
CCCTCGCAGCTGCCGTGGATCATCGACGACACATGCACGCTATCGGACAA
CGTCGGCATCCCGGCCAACCCCGGCATAGCAGAAACGTCCTCCGGCGCCT
TCAACCTCACAGCGCTCTCCACCGCAATCCGCCATATCGAAAGCACGCTA
CAGGGCAGATTCCTGGGCTGCGCGGAAAGCAACTTTCCGCTAGCAGCGAC
GCAGGGCGCGCCGATAGAGCAGACGGTGGTGAGCATCAACACGGCCGAGC
CGCTCGAAGCCAAGCTACTGCGACGTTACGCCGTGAACGTGTACTTTGAC
GCCACAATCGCCGCCGTGAGCGACGAAAAGCTGCTCTCGTTGGCGCCGGC
GTGCGCGCGCGCCGAAGACGCGCCGCGCGCGCGGCGCATCGCGCCCAGCG
CCACCAGCGCCACGGGCGTGACGGCGGACGTGGGCGGCGCCAAGGCTGAC
GCTGCGCACGAACGCATGCTGGAGGCGCGGCGCAGACGTAATCGACTGTC
GGCGGCGCGTAGTAACGAGCGCAGGAAGGAGAACTGGAGGCGTAACGTGC
AGATGCTTGGCGAGCTGAAGCGGCGCGTGGAGGAGCTGCGCTCAAGGCAG
GAGCGGCTTTTGGAAGAGAACGGCGTGTTGCGGACACAGGTTGGACGCGG
CGGTGCTGCGATTCAGCGTTAG
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protein sequence of Ggra5461.t1

>Ggra5461.t1 ID=Ggra5461.t1|Name=Ggra5461.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MSAAPRVSACAHASSLPAAFFDNARRTSTDDDRRVHSQRCLLARALLLAS
QHRWVADWLFSDPHARFHANLPVPLSAFDNAHPLSIMHLFEGEGYSRRLA
SSMLVVPIATMNSICVGYTVSQGSNEQRNVGRCAFHSGSREMLLVVNYYS
PTITAVMSVIPHAHTVKQFLFTCPAEQYSFSNLPNQVHTLHVGEREPVAT
TAVSQAAPQSQPLPNSIDHFLSLWPQNDCALPSSEQPSSSLPLVDFDFDA
PSQLPWIIDDTCTLSDNVGIPANPGIAETSSGAFNLTALSTAIRHIESTL
QGRFLGCAESNFPLAATQGAPIEQTVVSINTAEPLEAKLLRRYAVNVYFD
ATIAAVSDEKLLSLAPACARAEDAPRARRIAPSATSATGVTADVGGAKAD
AAHERMLEARRRRNRLSAARSNERRKENWRRNVQMLGELKRRVEELRSRQ
ERLLEENGVLRTQVGRGGAAIQR*
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mRNA from alignment at tig00000842_pilon:366631..368052-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5461.t1 ID=Ggra5461.t1|Name=Ggra5461.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000842_pilon:366631..368052- (Gracilaria gracilis GNS1m male)
ATGAGTGCCGCGCCGCGAGTTTCTGCCTGCGCGCATGCGTCGTCGCTGCC
TGCCGCCTTCTTCGACAACGCCAGACGCACCAGCACGGACGATGACCGCC
GCGTTCACTCGCAGCGTTGCTTGTTGGCGCGCGCTTTGCTGCTGGCTTCG
CAGCACCGCTGGGTGGCCGACTGGCTCTTTTCGGATCCGCATGCCAGGTT
CCATGCCAATCTGCCTGTGCCGCTTTCCGCCTTCGACAATGCACACCCGC
TGTCCATCATGCATCTGTTTGAGGGTGAAGGCTATAGTCGCCGACTCGCG
TCCAGTATGCTCGTGGTGCCCATCGCCACTATGAATTCCATATGCGTTGG
ATACACCGTTTCGCAGGGATCTAACGAGCAGCGTAACGTCGGCCGCTGTG
CGTTTCATTCCGGCTCTCGCGAGATGCTGTTGGTCGTTAATTATTACTCG
CCTACCATCACTGCAGTTATGTCTGTTATTCCACACGCGCACACCGTTAA
ACAGTTCCTCTTCACTTGCCCGGCCGAACAATACAGCTTCAGTAACCTTC
CTAACCAGGTGCACACCCTGCATGTTGGCGAACGCGAACCAGTTGCCACC
ACAGCTGTGTCCCAAGCAGCGCCCCAATCACAACCGCTACCTAACTCTAT
CGACCACTTTCTCTCACTGTGGCCGCAAAACGACTGCGCGCTACCGTCGA
GTGAGCAGCCGTCCTCCTCTCTCCCCCTGGTCGACTTTGACTTTGACGCG
CCCTCGCAGCTGCCGTGGATCATCGACGACACATGCACGCTATCGGACAA
CGTCGGCATCCCGGCCAACCCCGGCATAGCAGAAACGTCCTCCGGCGCCT
TCAACCTCACAGCGCTCTCCACCGCAATCCGCCATATCGAAAGCACGCTA
CAGGGCAGATTCCTGGGCTGCGCGGAAAGCAACTTTCCGCTAGCAGCGAC
GCAGGGCGCGCCGATAGAGCAGACGGTGGTGAGCATCAACACGGCCGAGC
CGCTCGAAGCCAAGCTACTGCGACGTTACGCCGTGAACGTGTACTTTGAC
GCCACAATCGCCGCCGTGAGCGACGAAAAGCTGCTCTCGTTGGCGCCGGC
GTGCGCGCGCGCCGAAGACGCGCCGCGCGCGCGGCGCATCGCGCCCAGCG
CCACCAGCGCCACGGGCGTGACGGCGGACGTGGGCGGCGCCAAGGCTGAC
GCTGCGCACGAACGCATGCTGGAGGCGCGGCGCAGACGTAATCGACTGTC
GGCGGCGCGTAGTAACGAGCGCAGGAAGGAGAACTGGAGGCGTAACGTGC
AGATGCTTGGCGAGCTGAAGCGGCGCGTGGAGGAGCTGCGCTCAAGGCAG
GAGCGGCTTTTGGAAGAGAACGGCGTGTTGCGGACACAGGTTGGACGCGG
CGGTGCTGCGATTCAGCGTTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:366631..368052-

>Ggra5461.t1 ID=Ggra5461.t1|Name=Ggra5461.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000842_pilon:366631..368052- (Gracilaria gracilis GNS1m male)
ATGAGTGCCGCGCCGCGAGTTTCTGCCTGCGCGCATGCGTCGTCGCTGCC
TGCCGCCTTCTTCGACAACGCCAGACGCACCAGCACGGACGATGACCGCC
GCGTTCACTCGCAGCGTTGCTTGTTGGCGCGCGCTTTGCTGCTGGCTTCG
CAGCACCGCTGGGTGGCCGACTGGCTCTTTTCGGATCCGCATGCCAGGTT
CCATGCCAATCTGCCTGTGCCGCTTTCCGCCTTCGACAATGCACACCCGC
TGTCCATCATGCATCTGTTTGAGGGTGAAGGCTATAGTCGCCGACTCGCG
TCCAGTATGCTCGTGGTGCCCATCGCCACTATGAATTCCATATGCGTTGG
ATACACCGTTTCGCAGGGATCTAACGAGCAGCGTAACGTCGGCCGCTGTG
CGTTTCATTCCGGCTCTCGCGAGATGCTGTTGGTCGTTAATTATTACTCG
CCTACCATCACTGCAGTTATGTCTGTTATTCCACACGCGCACACCGTTAA
ACAGTTCCTCTTCACTTGCCCGGCCGAACAATACAGCTTCAGTAACCTTC
CTAACCAGGTGCACACCCTGCATGTTGGCGAACGCGAACCAGTTGCCACC
ACAGCTGTGTCCCAAGCAGCGCCCCAATCACAACCGCTACCTAACTCTAT
CGACCACTTTCTCTCACTGTGGCCGCAAAACGACTGCGCGCTACCGTCGA
GTGAGCAGCCGTCCTCCTCTCTCCCCCTGGTCGACTTTGACTTTGACGCG
CCCTCGCAGCTGCCGTGGATCATCGACGACACATGCACGCTATCGGACAA
CGTCGGCATCCCGGCCAACCCCGGCATAGCAGAAACGTCCTCCGGCGCCT
TCAACCTCACAGCGCTCTCCACCGCAATCCGCCATATCGAAAGCACGCTA
CAGGGCAGATTCCTGGGCTGCGCGGAAAGCAACTTTCCGCTAGCAGCGAC
GCAGGGCGCGCCGATAGAGCAGACGGTGGTGAGCATCAACACGGCCGAGC
CGCTCGAAGCCAAGCTACTGCGACGTTACGCCGTGAACGTGTACTTTGAC
GCCACAATCGCCGCCGTGAGCGACGAAAAGCTGCTCTCGTTGGCGCCGGC
GTGCGCGCGCGCCGAAGACGCGCCGCGCGCGCGGCGCATCGCGCCCAGCG
CCACCAGCGCCACGGGCGTGACGGCGGACGTGGGCGGCGCCAAGGCTGAC
GCTGCGCACGAACGCATGCTGGAGGCGCGGCGCAGACGTAATCGACTGTC
GGCGGCGCGTAGTAACGAGCGCAGGAAGGAGAACTGGAGGCGTAACGTGC
AGATGCTTGGCGAGCTGAAGCGGCGCGTGGAGGAGCTGCGCTCAAGGCAG
GAGCGGCTTTTGGAAGAGAACGGCGTGTTGCGGACACAGGTTGGACGCGG
CGGTGCTGCGATTCAGCGTTAG
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