Ggra5454.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5454.t1
Unique NameGgra5454.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:350125..351606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705996.1
PFAMsGuanylate_kin,efThoc1
Max annot lvl2759|Eukaryota
KEGG koko:K12878
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
GOsGO:0000160,GO:0000347,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009723,GO:0009725,GO:0009755,GO:0009873,GO:0009892,GO:0009987,GO:0010033,GO:0010267,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030422,GO:0031047,GO:0031050,GO:0031503,GO:0032774,GO:0032870,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035556,GO:0040029,GO:0042221,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070727,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071369,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0097659,GO:0098542,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901699
Evalue2.06e-21
EggNOG OGsKOG2491@1|root,KOG2491@2759|Eukaryota
Descriptionnegative regulation of isotype switching to IgA isotypes
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5454Ggra5454Gracilaria gracilis GNS1m malegenetig00000842_pilon 350125..351606 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5454.t1.stop1Ggra5454.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 350125..350127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5454.t1.CDS1Ggra5454.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 350125..351606 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5454.t1.exon1Ggra5454.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 350125..351606 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5454.t1.start1Ggra5454.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 351604..351606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5454.t1Ggra5454.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 350125..351606 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5454.t1 ID=Ggra5454.t1|Name=Ggra5454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MAMSAAKEPVSTPNPVEQYLHTKDALSKLLSDKLKEPPTVLTEQLIEKFP
SFNFYPTLLLFLTQQLKSSSPFDALHVVDIATNLSLKERLDQHAPVTFLH
YLFSFITLDDIVANLDAIRMRITALPRTPRRQLYFIKLFQSAIERDTHGL
NAVRSGRLRLMLAESLRAWHPSGMNRRGAYATHPIAYDPLPESNVDAALY
NALWGLQKYLQTPSIAETERSWKEAASALDTVISAFESTAVRSDTAPHGV
DYPTSPNVLSLQLGDTHFRRHMLVQYAIFLHHLETAGSLPIGEKDSHAIR
QSSEFCGKLFERNGGGEQLKLRVLALLEKDDGNRLKHFVQSLLQRERVWL
RWKRTNYSHLESGVVKSPTVFKRRTVLWHQKDKTTGFNNWLQRIKSLETQ
PDNGDIYAALFDRSPVPGVKELKQALQEDLDEAELDESSKRKNDRKFKWR
SLRTLMDEDVGVLKRLSESTKLNLDRVLDSTQQSPNTVQNSRE*
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spliced messenger RNA

>Ggra5454.t1 ID=Ggra5454.t1|Name=Ggra5454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000842_pilon:350125..351606- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGTCTGCAGCAAAGGAACCCGTCTCAACGCCAAATCCAGTTGA
GCAATATTTGCATACTAAGGATGCCTTGAGCAAGCTCTTGAGTGACAAAT
TGAAAGAACCACCCACAGTTTTAACTGAGCAGCTTATCGAAAAGTTCCCC
TCGTTTAACTTTTATCCAACACTCCTTCTTTTCCTGACACAACAACTCAA
GTCATCATCCCCGTTTGATGCGCTTCATGTGGTGGATATTGCGACAAACC
TGTCTCTGAAGGAACGTCTCGATCAACATGCACCCGTCACATTTCTTCAC
TACCTGTTTTCGTTCATCACTCTTGATGACATCGTAGCGAACCTGGATGC
TATTCGTATGCGAATCACCGCATTACCGCGTACGCCTCGTCGACAATTGT
ACTTTATCAAGCTGTTTCAGTCAGCTATAGAACGCGATACACATGGGCTC
AATGCAGTAAGGTCTGGTCGTCTACGTCTTATGTTAGCTGAATCATTGCG
CGCATGGCATCCGTCGGGTATGAATCGTCGGGGAGCGTACGCAACTCATC
CAATTGCATACGACCCACTTCCGGAAAGCAACGTCGATGCCGCTTTATAC
AACGCACTATGGGGTTTGCAGAAATACCTTCAAACCCCCTCTATTGCCGA
AACAGAGAGGTCGTGGAAAGAGGCTGCGAGCGCCCTTGATACCGTCATAT
CGGCTTTCGAAAGTACTGCCGTAAGAAGTGATACCGCGCCTCATGGTGTA
GATTATCCGACCTCACCAAACGTCCTAAGTTTACAACTAGGCGACACTCA
CTTTCGTCGACATATGCTTGTTCAGTACGCGATCTTCCTCCATCACCTTG
AAACAGCGGGATCCCTCCCGATTGGCGAAAAGGATAGTCATGCTATTCGC
CAGAGTTCTGAATTCTGTGGCAAACTGTTTGAGAGGAACGGCGGCGGAGA
GCAACTGAAGCTTCGTGTTTTGGCACTGCTGGAGAAGGACGATGGCAATC
GTTTAAAGCATTTCGTCCAATCCCTGTTGCAGAGAGAAAGGGTGTGGCTT
CGCTGGAAGCGGACGAATTACTCACACTTGGAATCAGGAGTGGTTAAATC
TCCTACTGTGTTCAAGAGACGTACAGTCTTGTGGCATCAGAAGGACAAAA
CAACTGGGTTCAATAACTGGCTGCAGCGAATCAAGTCCTTGGAAACACAA
CCTGATAATGGCGATATATATGCTGCGTTGTTTGATAGATCACCCGTACC
CGGTGTCAAGGAGCTCAAACAGGCCTTGCAGGAAGATTTGGATGAAGCTG
AACTAGACGAGAGTTCGAAGAGAAAGAACGACCGAAAGTTCAAGTGGCGA
TCGTTACGGACACTAATGGACGAGGATGTGGGCGTACTAAAACGGCTGTC
AGAGTCGACCAAACTTAACCTAGACAGAGTCTTGGACTCGACTCAGCAGT
CACCAAACACAGTACAGAACTCAAGAGAATGA
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protein sequence of Ggra5454.t1

>Ggra5454.t1 ID=Ggra5454.t1|Name=Ggra5454.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MAMSAAKEPVSTPNPVEQYLHTKDALSKLLSDKLKEPPTVLTEQLIEKFP
SFNFYPTLLLFLTQQLKSSSPFDALHVVDIATNLSLKERLDQHAPVTFLH
YLFSFITLDDIVANLDAIRMRITALPRTPRRQLYFIKLFQSAIERDTHGL
NAVRSGRLRLMLAESLRAWHPSGMNRRGAYATHPIAYDPLPESNVDAALY
NALWGLQKYLQTPSIAETERSWKEAASALDTVISAFESTAVRSDTAPHGV
DYPTSPNVLSLQLGDTHFRRHMLVQYAIFLHHLETAGSLPIGEKDSHAIR
QSSEFCGKLFERNGGGEQLKLRVLALLEKDDGNRLKHFVQSLLQRERVWL
RWKRTNYSHLESGVVKSPTVFKRRTVLWHQKDKTTGFNNWLQRIKSLETQ
PDNGDIYAALFDRSPVPGVKELKQALQEDLDEAELDESSKRKNDRKFKWR
SLRTLMDEDVGVLKRLSESTKLNLDRVLDSTQQSPNTVQNSRE*
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mRNA from alignment at tig00000842_pilon:350125..351606-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5454.t1 ID=Ggra5454.t1|Name=Ggra5454.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000842_pilon:350125..351606- (Gracilaria gracilis GNS1m male)
ATGGCGATGTCTGCAGCAAAGGAACCCGTCTCAACGCCAAATCCAGTTGA
GCAATATTTGCATACTAAGGATGCCTTGAGCAAGCTCTTGAGTGACAAAT
TGAAAGAACCACCCACAGTTTTAACTGAGCAGCTTATCGAAAAGTTCCCC
TCGTTTAACTTTTATCCAACACTCCTTCTTTTCCTGACACAACAACTCAA
GTCATCATCCCCGTTTGATGCGCTTCATGTGGTGGATATTGCGACAAACC
TGTCTCTGAAGGAACGTCTCGATCAACATGCACCCGTCACATTTCTTCAC
TACCTGTTTTCGTTCATCACTCTTGATGACATCGTAGCGAACCTGGATGC
TATTCGTATGCGAATCACCGCATTACCGCGTACGCCTCGTCGACAATTGT
ACTTTATCAAGCTGTTTCAGTCAGCTATAGAACGCGATACACATGGGCTC
AATGCAGTAAGGTCTGGTCGTCTACGTCTTATGTTAGCTGAATCATTGCG
CGCATGGCATCCGTCGGGTATGAATCGTCGGGGAGCGTACGCAACTCATC
CAATTGCATACGACCCACTTCCGGAAAGCAACGTCGATGCCGCTTTATAC
AACGCACTATGGGGTTTGCAGAAATACCTTCAAACCCCCTCTATTGCCGA
AACAGAGAGGTCGTGGAAAGAGGCTGCGAGCGCCCTTGATACCGTCATAT
CGGCTTTCGAAAGTACTGCCGTAAGAAGTGATACCGCGCCTCATGGTGTA
GATTATCCGACCTCACCAAACGTCCTAAGTTTACAACTAGGCGACACTCA
CTTTCGTCGACATATGCTTGTTCAGTACGCGATCTTCCTCCATCACCTTG
AAACAGCGGGATCCCTCCCGATTGGCGAAAAGGATAGTCATGCTATTCGC
CAGAGTTCTGAATTCTGTGGCAAACTGTTTGAGAGGAACGGCGGCGGAGA
GCAACTGAAGCTTCGTGTTTTGGCACTGCTGGAGAAGGACGATGGCAATC
GTTTAAAGCATTTCGTCCAATCCCTGTTGCAGAGAGAAAGGGTGTGGCTT
CGCTGGAAGCGGACGAATTACTCACACTTGGAATCAGGAGTGGTTAAATC
TCCTACTGTGTTCAAGAGACGTACAGTCTTGTGGCATCAGAAGGACAAAA
CAACTGGGTTCAATAACTGGCTGCAGCGAATCAAGTCCTTGGAAACACAA
CCTGATAATGGCGATATATATGCTGCGTTGTTTGATAGATCACCCGTACC
CGGTGTCAAGGAGCTCAAACAGGCCTTGCAGGAAGATTTGGATGAAGCTG
AACTAGACGAGAGTTCGAAGAGAAAGAACGACCGAAAGTTCAAGTGGCGA
TCGTTACGGACACTAATGGACGAGGATGTGGGCGTACTAAAACGGCTGTC
AGAGTCGACCAAACTTAACCTAGACAGAGTCTTGGACTCGACTCAGCAGT
CACCAAACACAGTACAGAACTCAAGAGAATGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:350125..351606-

>Ggra5454.t1 ID=Ggra5454.t1|Name=Ggra5454.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000842_pilon:350125..351606- (Gracilaria gracilis GNS1m male)
ATGGCGATGTCTGCAGCAAAGGAACCCGTCTCAACGCCAAATCCAGTTGA
GCAATATTTGCATACTAAGGATGCCTTGAGCAAGCTCTTGAGTGACAAAT
TGAAAGAACCACCCACAGTTTTAACTGAGCAGCTTATCGAAAAGTTCCCC
TCGTTTAACTTTTATCCAACACTCCTTCTTTTCCTGACACAACAACTCAA
GTCATCATCCCCGTTTGATGCGCTTCATGTGGTGGATATTGCGACAAACC
TGTCTCTGAAGGAACGTCTCGATCAACATGCACCCGTCACATTTCTTCAC
TACCTGTTTTCGTTCATCACTCTTGATGACATCGTAGCGAACCTGGATGC
TATTCGTATGCGAATCACCGCATTACCGCGTACGCCTCGTCGACAATTGT
ACTTTATCAAGCTGTTTCAGTCAGCTATAGAACGCGATACACATGGGCTC
AATGCAGTAAGGTCTGGTCGTCTACGTCTTATGTTAGCTGAATCATTGCG
CGCATGGCATCCGTCGGGTATGAATCGTCGGGGAGCGTACGCAACTCATC
CAATTGCATACGACCCACTTCCGGAAAGCAACGTCGATGCCGCTTTATAC
AACGCACTATGGGGTTTGCAGAAATACCTTCAAACCCCCTCTATTGCCGA
AACAGAGAGGTCGTGGAAAGAGGCTGCGAGCGCCCTTGATACCGTCATAT
CGGCTTTCGAAAGTACTGCCGTAAGAAGTGATACCGCGCCTCATGGTGTA
GATTATCCGACCTCACCAAACGTCCTAAGTTTACAACTAGGCGACACTCA
CTTTCGTCGACATATGCTTGTTCAGTACGCGATCTTCCTCCATCACCTTG
AAACAGCGGGATCCCTCCCGATTGGCGAAAAGGATAGTCATGCTATTCGC
CAGAGTTCTGAATTCTGTGGCAAACTGTTTGAGAGGAACGGCGGCGGAGA
GCAACTGAAGCTTCGTGTTTTGGCACTGCTGGAGAAGGACGATGGCAATC
GTTTAAAGCATTTCGTCCAATCCCTGTTGCAGAGAGAAAGGGTGTGGCTT
CGCTGGAAGCGGACGAATTACTCACACTTGGAATCAGGAGTGGTTAAATC
TCCTACTGTGTTCAAGAGACGTACAGTCTTGTGGCATCAGAAGGACAAAA
CAACTGGGTTCAATAACTGGCTGCAGCGAATCAAGTCCTTGGAAACACAA
CCTGATAATGGCGATATATATGCTGCGTTGTTTGATAGATCACCCGTACC
CGGTGTCAAGGAGCTCAAACAGGCCTTGCAGGAAGATTTGGATGAAGCTG
AACTAGACGAGAGTTCGAAGAGAAAGAACGACCGAAAGTTCAAGTGGCGA
TCGTTACGGACACTAATGGACGAGGATGTGGGCGTACTAAAACGGCTGTC
AGAGTCGACCAAACTTAACCTAGACAGAGTCTTGGACTCGACTCAGCAGT
CACCAAACACAGTACAGAACTCAAGAGAATGA
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