Ggra5447.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5447.t1
Unique NameGgra5447.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length587
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:296601..299206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_002734747.1
PFAMsGRDP-like
Max annot lvl33208|Metazoa
Evalue1.08e-41
EggNOG OGs28JC1@1|root,2QRQZ@2759|Eukaryota,38E6R@33154|Opisthokonta,3BHPZ@33208|Metazoa,3D58M@33213|Bilateria
DescriptionGlycine-rich domain-containing protein-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5447Ggra5447Gracilaria gracilis GNS1m malegenetig00000842_pilon 296601..299206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5447.t1Ggra5447.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 296601..299206 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5447.t1.stop1Ggra5447.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 296601..296603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5447.t1.CDS1Ggra5447.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 296601..296759 -
Ggra5447.t1.CDS2Ggra5447.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 297605..299206 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5447.t1.exon1Ggra5447.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 296601..296759 -
Ggra5447.t1.exon2Ggra5447.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 297605..299206 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5447.t1.intron1Ggra5447.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 296760..297604 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5447.t1.start1Ggra5447.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 299204..299206 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5447.t1 ID=Ggra5447.t1|Name=Ggra5447.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp
MKPSLPPAKLHAALVQRVQYLLELLDEVEQHPALYTNTRTLRHALRRYER
VWVPLLAKASSLALDTRRLAPPLDVQWVWMVHMLCPHKYAPDSRRMWAAA
HRSREPAVIDHMLMCAAQRRRALARTRRFWSAHFAHEPFDNAFLHDGLLC
DERDEQQQQQQTGGESEGDSNISYDIIAACERQMMFHRHVGVLPQYRHHS
FIRAAVSRYYMFLELKEKHRKAVLVPTYDTDVVWHTHMMHPINYASHSTR
VCGFVLPHDDTITGRDDGADLHHSWHETLRLWYAHFGTTFWRPGAMARGN
VSLQERLQKRAICDATDALERSLHAAGGGGALRFEVKPFAFHGDVERMAD
WRSVSWMHAADHAHLRHPRPEEHWNRLQLATAPPNGGGGGASLVARTVLH
AGARRSALVELFEYDSTHGLRAMPLAAAHSAAQNSLCEQPSLRAKCALRA
DEHAMVVRVRGDDVALVAAPMRPEAAPRVWLLRRRDGSGGGGGGGWRTAS
DAKATVGALALRALALGFADDTRALALRGADGTRRSNVKRKLRLERLKKE
LELLCSHATQLRVRERRLRQENSTLKMMTVSAVPQK*
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spliced messenger RNA

>Ggra5447.t1 ID=Ggra5447.t1|Name=Ggra5447.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000842_pilon:296601..299206- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCGTCGCTGCCCCCCGCCAAGCTGCACGCCGCTCTGGTGCAGCG
CGTGCAGTACCTACTAGAGCTGCTAGACGAGGTGGAGCAGCACCCAGCGC
TGTACACCAACACGCGGACGCTGCGCCACGCGCTGCGGCGCTATGAGCGT
GTGTGGGTGCCGCTGCTGGCCAAGGCGTCGTCGCTGGCGCTGGACACCCG
CCGGCTGGCGCCGCCGCTGGACGTGCAGTGGGTGTGGATGGTGCACATGC
TGTGCCCGCACAAGTACGCACCAGACTCGCGTCGCATGTGGGCGGCCGCG
CACCGCAGCCGCGAGCCGGCCGTCATCGACCACATGCTCATGTGCGCCGC
GCAGCGACGGCGCGCTCTGGCGCGCACGCGGCGCTTTTGGTCCGCACACT
TTGCGCACGAGCCGTTTGACAACGCCTTTCTGCACGACGGACTGCTGTGC
GACGAGCGCGACGAGCAACAACAGCAGCAGCAGACTGGTGGCGAAAGCGA
AGGCGACAGCAACATTTCGTACGATATCATAGCGGCATGCGAGCGACAGA
TGATGTTTCACCGCCACGTCGGCGTGCTGCCGCAGTACCGGCACCACAGC
TTCATACGCGCCGCCGTCAGTCGCTACTACATGTTCCTGGAGCTGAAGGA
GAAGCATCGCAAGGCGGTGCTGGTTCCGACGTACGATACGGACGTGGTGT
GGCACACGCACATGATGCACCCCATCAACTACGCCAGCCACAGCACGCGC
GTGTGCGGCTTCGTGCTACCGCACGACGACACCATCACGGGGCGCGACGA
CGGCGCCGACCTGCACCACAGCTGGCACGAGACGCTGCGGCTGTGGTACG
CGCACTTTGGCACGACGTTCTGGCGGCCCGGCGCCATGGCGCGCGGCAAC
GTGTCGCTGCAGGAGCGCCTCCAGAAGCGCGCCATCTGCGACGCCACCGA
CGCATTGGAGCGCTCGCTCCACGCGGCCGGCGGCGGCGGCGCGTTGCGGT
TCGAGGTCAAGCCGTTTGCGTTCCACGGCGACGTGGAGCGCATGGCAGAC
TGGCGCAGCGTGTCGTGGATGCACGCGGCCGACCACGCGCACCTCAGGCA
CCCGCGGCCCGAGGAGCACTGGAACCGCCTGCAGCTGGCAACGGCGCCTC
CAAACGGCGGCGGCGGAGGCGCATCGCTGGTGGCGCGCACGGTGCTGCAC
GCGGGCGCGCGGCGCAGCGCGCTGGTGGAGCTATTCGAGTACGACAGCAC
ACACGGGCTGCGCGCCATGCCGCTGGCGGCCGCGCACTCTGCCGCGCAGA
ACAGCTTGTGCGAACAGCCGTCGCTGCGCGCAAAGTGCGCGCTGCGCGCC
GATGAGCACGCCATGGTGGTGCGCGTGCGCGGCGACGACGTGGCGTTGGT
GGCCGCGCCGATGCGCCCCGAAGCGGCGCCGCGCGTGTGGCTGCTGCGCC
GGCGCGACGGCAGCGGCGGCGGCGGCGGCGGCGGCTGGCGAACGGCCTCG
GACGCCAAAGCGACGGTCGGCGCGCTGGCGCTGCGCGCGCTGGCGCTGGG
TTTCGCGGACGACACGCGCGCGCTGGCGCTGCGCGGCGCGGACGGCACGC
GCCGCAGCAACGTGAAGCGCAAGCTGCGCCTGGAGCGGCTCAAGAAGGAG
CTGGAGCTGCTGTGCTCGCACGCCACGCAGCTGCGCGTCAGGGAACGGCG
CCTGCGGCAGGAGAATAGCACACTCAAGATGATGACCGTGTCCGCTGTCC
CGCAAAAATAA
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protein sequence of Ggra5447.t1

>Ggra5447.t1 ID=Ggra5447.t1|Name=Ggra5447.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MKPSLPPAKLHAALVQRVQYLLELLDEVEQHPALYTNTRTLRHALRRYER
VWVPLLAKASSLALDTRRLAPPLDVQWVWMVHMLCPHKYAPDSRRMWAAA
HRSREPAVIDHMLMCAAQRRRALARTRRFWSAHFAHEPFDNAFLHDGLLC
DERDEQQQQQQTGGESEGDSNISYDIIAACERQMMFHRHVGVLPQYRHHS
FIRAAVSRYYMFLELKEKHRKAVLVPTYDTDVVWHTHMMHPINYASHSTR
VCGFVLPHDDTITGRDDGADLHHSWHETLRLWYAHFGTTFWRPGAMARGN
VSLQERLQKRAICDATDALERSLHAAGGGGALRFEVKPFAFHGDVERMAD
WRSVSWMHAADHAHLRHPRPEEHWNRLQLATAPPNGGGGGASLVARTVLH
AGARRSALVELFEYDSTHGLRAMPLAAAHSAAQNSLCEQPSLRAKCALRA
DEHAMVVRVRGDDVALVAAPMRPEAAPRVWLLRRRDGSGGGGGGGWRTAS
DAKATVGALALRALALGFADDTRALALRGADGTRRSNVKRKLRLERLKKE
LELLCSHATQLRVRERRLRQENSTLKMMTVSAVPQK*
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mRNA from alignment at tig00000842_pilon:296601..299206-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5447.t1 ID=Ggra5447.t1|Name=Ggra5447.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2606bp|location=Sequence derived from alignment at tig00000842_pilon:296601..299206- (Gracilaria gracilis GNS1m male)
ATGAAGCCGTCGCTGCCCCCCGCCAAGCTGCACGCCGCTCTGGTGCAGCG
CGTGCAGTACCTACTAGAGCTGCTAGACGAGGTGGAGCAGCACCCAGCGC
TGTACACCAACACGCGGACGCTGCGCCACGCGCTGCGGCGCTATGAGCGT
GTGTGGGTGCCGCTGCTGGCCAAGGCGTCGTCGCTGGCGCTGGACACCCG
CCGGCTGGCGCCGCCGCTGGACGTGCAGTGGGTGTGGATGGTGCACATGC
TGTGCCCGCACAAGTACGCACCAGACTCGCGTCGCATGTGGGCGGCCGCG
CACCGCAGCCGCGAGCCGGCCGTCATCGACCACATGCTCATGTGCGCCGC
GCAGCGACGGCGCGCTCTGGCGCGCACGCGGCGCTTTTGGTCCGCACACT
TTGCGCACGAGCCGTTTGACAACGCCTTTCTGCACGACGGACTGCTGTGC
GACGAGCGCGACGAGCAACAACAGCAGCAGCAGACTGGTGGCGAAAGCGA
AGGCGACAGCAACATTTCGTACGATATCATAGCGGCATGCGAGCGACAGA
TGATGTTTCACCGCCACGTCGGCGTGCTGCCGCAGTACCGGCACCACAGC
TTCATACGCGCCGCCGTCAGTCGCTACTACATGTTCCTGGAGCTGAAGGA
GAAGCATCGCAAGGCGGTGCTGGTTCCGACGTACGATACGGACGTGGTGT
GGCACACGCACATGATGCACCCCATCAACTACGCCAGCCACAGCACGCGC
GTGTGCGGCTTCGTGCTACCGCACGACGACACCATCACGGGGCGCGACGA
CGGCGCCGACCTGCACCACAGCTGGCACGAGACGCTGCGGCTGTGGTACG
CGCACTTTGGCACGACGTTCTGGCGGCCCGGCGCCATGGCGCGCGGCAAC
GTGTCGCTGCAGGAGCGCCTCCAGAAGCGCGCCATCTGCGACGCCACCGA
CGCATTGGAGCGCTCGCTCCACGCGGCCGGCGGCGGCGGCGCGTTGCGGT
TCGAGGTCAAGCCGTTTGCGTTCCACGGCGACGTGGAGCGCATGGCAGAC
TGGCGCAGCGTGTCGTGGATGCACGCGGCCGACCACGCGCACCTCAGGCA
CCCGCGGCCCGAGGAGCACTGGAACCGCCTGCAGCTGGCAACGGCGCCTC
CAAACGGCGGCGGCGGAGGCGCATCGCTGGTGGCGCGCACGGTGCTGCAC
GCGGGCGCGCGGCGCAGCGCGCTGGTGGAGCTATTCGAGTACGACAGCAC
ACACGGGCTGCGCGCCATGCCGCTGGCGGCCGCGCACTCTGCCGCGCAGA
ACAGCTTGTGCGAACAGCCGTCGCTGCGCGCAAAGTGCGCGCTGCGCGCC
GATGAGCACGCCATGGTGGTGCGCGTGCGCGGCGACGACGTGGCGTTGGT
GGCCGCGCCGATGCGCCCCGAAGCGGCGCCGCGCGTGTGGCTGCTGCGCC
GGCGCGACGGCAGCGGCGGCGGCGGCGGCGGCGGCTGGCGAACGGCCTCG
GACGCCAAAGCGACGGTCGGCGCGCTGGCGCTGCGCGCGCTGGCGCTGGG
TTTCGCGGACGACACGCGCGCGCTGGCGCTGCGCGGCGCGGACGGCACGC
GCGTGCGCTGGACGCTGGACTGGCGGGCGAGCGTGGCGCGCACAGAGCTG
CGCGTGCGCGGCGCGGACGCGGCCGTGGCCGGCGCGGCCGTGGCGCTTTG
TGGCGCGGCGCTGCTTACGATGGGCGGCCGCTGCCGCAGCCGCTGCCGCG
GCAGGCGCGGCGGCGGCTGCGGCGACTGCGGCGGCTGCGGCGGCGGCGGC
AGTGGCGGCAGCGGCGGCAGCGGCGGCAGCGGCTGCGGCTGCGGCAGGTG
CTGACGGCGCCGTGACGTCAGCGCCAAGTGGGGGAAATGCAACACGCAAA
AGCACACGTGGCGCGCGTCGGCGCCATAAAAAGCGCCACGCGCGCGCGCG
CTCGCCGCTTTCATCCATGCAGCAGCAGCAGCAGCAGCAGTGGGACGCGC
TCTCGACTTGGTTGCGGTTGGTGGCAGCGCCTTGCGGAAGGAGCAGCAAC
GCCGAGCCCGATGTGCACGCCGTGAGCCGCGCGCACACCCACAGCCGAGC
GAGCGAGCGAGCGAGCGAGCAAGCGAGAGATGAAAGCCGTGCGGCGCATG
TCGGCGCCGTCAGCGCAGCCGCCGCGCTCCACGTGCGGCCGCATTGCCGT
GGAGCAGCTGCTGGTGGACGAGGTGAAGCCGACGCGCGCGGCGCCGCCGG
CGCTGGTGACGGCGTGGCGGCCGCGCGTGGTGCGGCTGCTGCCGCGACTG
GCGCCCGCGCCGGCGGCGGCGGCGGCGCTGCCCGCACCGTCGTCGGGCGG
CTCGGCGGCGTGGCGCGACGCGCCGGCGGCGGCCGAGCGCGAGCTGCGGC
GCAGCAAGATGGAGCTGCGCAAGGCCAGGAACCGCGAGTCTGCGCAGCGC
AGCAACGTGAAGCGCAAGCTGCGCCTGGAGCGGCTCAAGAAGGAGCTGGA
GCTGCTGTGCTCGCACGCCACGCAGCTGCGCGTCAGGGAACGGCGCCTGC
GGCAGGAGAATAGCACACTCAAGATGATGACCGTGTCCGCTGTCCCGCAA
AAATAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:296601..299206-

>Ggra5447.t1 ID=Ggra5447.t1|Name=Ggra5447.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1761bp|location=Sequence derived from alignment at tig00000842_pilon:296601..299206- (Gracilaria gracilis GNS1m male)
ATGAAGCCGTCGCTGCCCCCCGCCAAGCTGCACGCCGCTCTGGTGCAGCG
CGTGCAGTACCTACTAGAGCTGCTAGACGAGGTGGAGCAGCACCCAGCGC
TGTACACCAACACGCGGACGCTGCGCCACGCGCTGCGGCGCTATGAGCGT
GTGTGGGTGCCGCTGCTGGCCAAGGCGTCGTCGCTGGCGCTGGACACCCG
CCGGCTGGCGCCGCCGCTGGACGTGCAGTGGGTGTGGATGGTGCACATGC
TGTGCCCGCACAAGTACGCACCAGACTCGCGTCGCATGTGGGCGGCCGCG
CACCGCAGCCGCGAGCCGGCCGTCATCGACCACATGCTCATGTGCGCCGC
GCAGCGACGGCGCGCTCTGGCGCGCACGCGGCGCTTTTGGTCCGCACACT
TTGCGCACGAGCCGTTTGACAACGCCTTTCTGCACGACGGACTGCTGTGC
GACGAGCGCGACGAGCAACAACAGCAGCAGCAGACTGGTGGCGAAAGCGA
AGGCGACAGCAACATTTCGTACGATATCATAGCGGCATGCGAGCGACAGA
TGATGTTTCACCGCCACGTCGGCGTGCTGCCGCAGTACCGGCACCACAGC
TTCATACGCGCCGCCGTCAGTCGCTACTACATGTTCCTGGAGCTGAAGGA
GAAGCATCGCAAGGCGGTGCTGGTTCCGACGTACGATACGGACGTGGTGT
GGCACACGCACATGATGCACCCCATCAACTACGCCAGCCACAGCACGCGC
GTGTGCGGCTTCGTGCTACCGCACGACGACACCATCACGGGGCGCGACGA
CGGCGCCGACCTGCACCACAGCTGGCACGAGACGCTGCGGCTGTGGTACG
CGCACTTTGGCACGACGTTCTGGCGGCCCGGCGCCATGGCGCGCGGCAAC
GTGTCGCTGCAGGAGCGCCTCCAGAAGCGCGCCATCTGCGACGCCACCGA
CGCATTGGAGCGCTCGCTCCACGCGGCCGGCGGCGGCGGCGCGTTGCGGT
TCGAGGTCAAGCCGTTTGCGTTCCACGGCGACGTGGAGCGCATGGCAGAC
TGGCGCAGCGTGTCGTGGATGCACGCGGCCGACCACGCGCACCTCAGGCA
CCCGCGGCCCGAGGAGCACTGGAACCGCCTGCAGCTGGCAACGGCGCCTC
CAAACGGCGGCGGCGGAGGCGCATCGCTGGTGGCGCGCACGGTGCTGCAC
GCGGGCGCGCGGCGCAGCGCGCTGGTGGAGCTATTCGAGTACGACAGCAC
ACACGGGCTGCGCGCCATGCCGCTGGCGGCCGCGCACTCTGCCGCGCAGA
ACAGCTTGTGCGAACAGCCGTCGCTGCGCGCAAAGTGCGCGCTGCGCGCC
GATGAGCACGCCATGGTGGTGCGCGTGCGCGGCGACGACGTGGCGTTGGT
GGCCGCGCCGATGCGCCCCGAAGCGGCGCCGCGCGTGTGGCTGCTGCGCC
GGCGCGACGGCAGCGGCGGCGGCGGCGGCGGCGGCTGGCGAACGGCCTCG
GACGCCAAAGCGACGGTCGGCGCGCTGGCGCTGCGCGCGCTGGCGCTGGG
TTTCGCGGACGACACGCGCGCGCTGGCGCTGCGCGGCGCGGACGGCACGC
GCCGCAGCAACGTGAAGCGCAAGCTGCGCCTGGAGCGGCTCAAGAAGGAG
CTGGAGCTGCTGTGCTCGCACGCCACGCAGCTGCGCGTCAGGGAACGGCG
CCTGCGGCAGGAGAATAGCACACTCAAGATGATGACCGTGTCCGCTGTCC
CGCAAAAATAA
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