Ggra5444.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5444.t1
Unique NameGgra5444.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:289764..290879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006675842.1
Preferred nameCAF17
PFAMsGCV_T,GCV_T_C
Max annot lvl4751|Fungi
KEGG koko:K22073
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044572,GO:0051186,GO:0070013,GO:0071840
Evalue2.66e-31
EggNOG OGsCOG0354@1|root,KOG2929@2759|Eukaryota,39TYK@33154|Opisthokonta,3NVKT@4751|Fungi
Descriptiontransferase caf17, mitochondrial
COG categoryK
BRITEko00000,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5444Ggra5444Gracilaria gracilis GNS1m malegenetig00000842_pilon 289764..290879 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5444.t1.stop1Ggra5444.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 289764..289766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5444.t1.CDS1Ggra5444.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 289764..290879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5444.t1.exon1Ggra5444.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 289764..290879 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5444.t1.start1Ggra5444.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 290877..290879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5444.t1Ggra5444.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 289764..290879 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5444.t1 ID=Ggra5444.t1|Name=Ggra5444.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MRRLADAMHPSARACSAATAPMAPAAPSFCARLTSRGVVRVHGAHALRFL
QALVTNDLHQLCGDGHDGGDGDGDGDGDGDGDGDGGGDGGGGARNSACAA
AFLNGRGRVLFGAIIQRQQRNDYLIDVAHGSVAPFIAHLQRHRLRADVHI
SDQSHARCVWSLVNVRRAALQADARVFADPRLHALGLRAIVPHDYRPPPH
APLAHERQYHRLRILNGVPDGADFEHEPLPLDLALHLLNGVSFSKGCYLG
QELTARSHFTGVLRKRITPVVVRHAEQVGQVSADDASTMLCDAPELRLDS
GSELMLEGKSKAVAKVTSSVDNIGLAVLRLADVFSEQRTRPLRLRDGRLV
TAWRPVWWHERNNGAVQQHNS*
back to top

spliced messenger RNA

>Ggra5444.t1 ID=Ggra5444.t1|Name=Ggra5444.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000842_pilon:289764..290879- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGGCTCGCCGACGCGATGCATCCATCCGCCCGCGCGTGCTCCGC
CGCCACAGCACCCATGGCGCCGGCGGCGCCGAGCTTCTGCGCGCGGCTGA
CGTCGCGCGGCGTGGTGCGCGTGCACGGCGCGCACGCGCTGCGCTTCCTA
CAGGCGCTGGTCACCAACGACCTGCACCAGCTGTGCGGCGACGGCCACGA
TGGCGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCG
ACGGCGGCGGCGACGGCGGCGGCGGCGCGCGCAACAGCGCATGCGCGGCG
GCGTTTCTCAACGGGCGGGGGCGCGTGCTGTTCGGCGCAATCATCCAGCG
GCAGCAGCGCAACGACTATCTGATCGACGTAGCGCACGGCAGTGTAGCGC
CCTTCATCGCGCATCTACAGCGGCACCGTCTACGCGCCGACGTGCACATA
AGCGACCAGTCGCACGCGCGCTGCGTGTGGAGCCTGGTTAACGTACGACG
CGCCGCGCTGCAAGCCGACGCTCGCGTGTTTGCGGACCCGCGTCTGCACG
CGCTGGGGCTACGCGCCATCGTGCCGCACGACTACCGCCCGCCGCCGCAC
GCGCCGCTGGCGCACGAGCGGCAGTACCACCGGCTGCGTATCCTCAACGG
CGTGCCGGACGGCGCGGACTTTGAGCACGAGCCGCTGCCGCTTGACCTTG
CGCTGCATTTGTTGAACGGCGTGTCGTTCAGCAAGGGCTGCTACCTGGGG
CAGGAATTGACCGCGCGCAGCCACTTCACCGGCGTGTTGCGCAAGCGCAT
CACCCCGGTCGTAGTGCGCCACGCTGAGCAAGTGGGGCAAGTGAGCGCCG
ACGATGCATCTACCATGCTGTGCGACGCGCCGGAGCTGCGTTTGGACAGT
GGCTCCGAGCTGATGCTAGAGGGGAAGAGTAAGGCGGTGGCAAAGGTCAC
CTCTAGCGTGGACAATATCGGGCTGGCCGTGCTACGGCTGGCCGACGTGT
TCAGTGAGCAGCGCACGCGCCCATTACGCTTGCGAGACGGGCGCTTGGTC
ACGGCGTGGCGCCCCGTTTGGTGGCACGAACGCAACAATGGCGCCGTACA
ACAGCACAATAGCTGA
back to top

protein sequence of Ggra5444.t1

>Ggra5444.t1 ID=Ggra5444.t1|Name=Ggra5444.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MRRLADAMHPSARACSAATAPMAPAAPSFCARLTSRGVVRVHGAHALRFL
QALVTNDLHQLCGDGHDGGDGDGDGDGDGDGDGDGGGDGGGGARNSACAA
AFLNGRGRVLFGAIIQRQQRNDYLIDVAHGSVAPFIAHLQRHRLRADVHI
SDQSHARCVWSLVNVRRAALQADARVFADPRLHALGLRAIVPHDYRPPPH
APLAHERQYHRLRILNGVPDGADFEHEPLPLDLALHLLNGVSFSKGCYLG
QELTARSHFTGVLRKRITPVVVRHAEQVGQVSADDASTMLCDAPELRLDS
GSELMLEGKSKAVAKVTSSVDNIGLAVLRLADVFSEQRTRPLRLRDGRLV
TAWRPVWWHERNNGAVQQHNS*
back to top

mRNA from alignment at tig00000842_pilon:289764..290879-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5444.t1 ID=Ggra5444.t1|Name=Ggra5444.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000842_pilon:289764..290879- (Gracilaria gracilis GNS1m male)
ATGCGCCGGCTCGCCGACGCGATGCATCCATCCGCCCGCGCGTGCTCCGC
CGCCACAGCACCCATGGCGCCGGCGGCGCCGAGCTTCTGCGCGCGGCTGA
CGTCGCGCGGCGTGGTGCGCGTGCACGGCGCGCACGCGCTGCGCTTCCTA
CAGGCGCTGGTCACCAACGACCTGCACCAGCTGTGCGGCGACGGCCACGA
TGGCGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCG
ACGGCGGCGGCGACGGCGGCGGCGGCGCGCGCAACAGCGCATGCGCGGCG
GCGTTTCTCAACGGGCGGGGGCGCGTGCTGTTCGGCGCAATCATCCAGCG
GCAGCAGCGCAACGACTATCTGATCGACGTAGCGCACGGCAGTGTAGCGC
CCTTCATCGCGCATCTACAGCGGCACCGTCTACGCGCCGACGTGCACATA
AGCGACCAGTCGCACGCGCGCTGCGTGTGGAGCCTGGTTAACGTACGACG
CGCCGCGCTGCAAGCCGACGCTCGCGTGTTTGCGGACCCGCGTCTGCACG
CGCTGGGGCTACGCGCCATCGTGCCGCACGACTACCGCCCGCCGCCGCAC
GCGCCGCTGGCGCACGAGCGGCAGTACCACCGGCTGCGTATCCTCAACGG
CGTGCCGGACGGCGCGGACTTTGAGCACGAGCCGCTGCCGCTTGACCTTG
CGCTGCATTTGTTGAACGGCGTGTCGTTCAGCAAGGGCTGCTACCTGGGG
CAGGAATTGACCGCGCGCAGCCACTTCACCGGCGTGTTGCGCAAGCGCAT
CACCCCGGTCGTAGTGCGCCACGCTGAGCAAGTGGGGCAAGTGAGCGCCG
ACGATGCATCTACCATGCTGTGCGACGCGCCGGAGCTGCGTTTGGACAGT
GGCTCCGAGCTGATGCTAGAGGGGAAGAGTAAGGCGGTGGCAAAGGTCAC
CTCTAGCGTGGACAATATCGGGCTGGCCGTGCTACGGCTGGCCGACGTGT
TCAGTGAGCAGCGCACGCGCCCATTACGCTTGCGAGACGGGCGCTTGGTC
ACGGCGTGGCGCCCCGTTTGGTGGCACGAACGCAACAATGGCGCCGTACA
ACAGCACAATAGCTGA
back to top

Coding sequence (CDS) from alignment at tig00000842_pilon:289764..290879-

>Ggra5444.t1 ID=Ggra5444.t1|Name=Ggra5444.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000842_pilon:289764..290879- (Gracilaria gracilis GNS1m male)
ATGCGCCGGCTCGCCGACGCGATGCATCCATCCGCCCGCGCGTGCTCCGC
CGCCACAGCACCCATGGCGCCGGCGGCGCCGAGCTTCTGCGCGCGGCTGA
CGTCGCGCGGCGTGGTGCGCGTGCACGGCGCGCACGCGCTGCGCTTCCTA
CAGGCGCTGGTCACCAACGACCTGCACCAGCTGTGCGGCGACGGCCACGA
TGGCGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCG
ACGGCGGCGGCGACGGCGGCGGCGGCGCGCGCAACAGCGCATGCGCGGCG
GCGTTTCTCAACGGGCGGGGGCGCGTGCTGTTCGGCGCAATCATCCAGCG
GCAGCAGCGCAACGACTATCTGATCGACGTAGCGCACGGCAGTGTAGCGC
CCTTCATCGCGCATCTACAGCGGCACCGTCTACGCGCCGACGTGCACATA
AGCGACCAGTCGCACGCGCGCTGCGTGTGGAGCCTGGTTAACGTACGACG
CGCCGCGCTGCAAGCCGACGCTCGCGTGTTTGCGGACCCGCGTCTGCACG
CGCTGGGGCTACGCGCCATCGTGCCGCACGACTACCGCCCGCCGCCGCAC
GCGCCGCTGGCGCACGAGCGGCAGTACCACCGGCTGCGTATCCTCAACGG
CGTGCCGGACGGCGCGGACTTTGAGCACGAGCCGCTGCCGCTTGACCTTG
CGCTGCATTTGTTGAACGGCGTGTCGTTCAGCAAGGGCTGCTACCTGGGG
CAGGAATTGACCGCGCGCAGCCACTTCACCGGCGTGTTGCGCAAGCGCAT
CACCCCGGTCGTAGTGCGCCACGCTGAGCAAGTGGGGCAAGTGAGCGCCG
ACGATGCATCTACCATGCTGTGCGACGCGCCGGAGCTGCGTTTGGACAGT
GGCTCCGAGCTGATGCTAGAGGGGAAGAGTAAGGCGGTGGCAAAGGTCAC
CTCTAGCGTGGACAATATCGGGCTGGCCGTGCTACGGCTGGCCGACGTGT
TCAGTGAGCAGCGCACGCGCCCATTACGCTTGCGAGACGGGCGCTTGGTC
ACGGCGTGGCGCCCCGTTTGGTGGCACGAACGCAACAATGGCGCCGTACA
ACAGCACAATAGCTGA
back to top