Ggra5443.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5443.t1
Unique NameGgra5443.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:288882..289760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_13504T0
PFAMsPCMT
Max annot lvl4751|Fungi
KEGG koko:K00573
GOsGO:0003674,GO:0003824,GO:0004719,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0030091,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051998,GO:0071704,GO:0140096,GO:1901564
Evalue4.71e-65
EggNOG OGsCOG2518@1|root,KOG1661@2759|Eukaryota,38DY1@33154|Opisthokonta,3P13J@4751|Fungi
EC2.1.1.77
Descriptionprotein-l-isoaspartate o-methyltransferase
COG categoryH
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5443Ggra5443Gracilaria gracilis GNS1m malegenetig00000842_pilon 288882..289760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5443.t1Ggra5443.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 288882..289760 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5443.t1.start1Ggra5443.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 288882..288884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5443.t1.CDS1Ggra5443.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 288882..289397 +
Ggra5443.t1.CDS2Ggra5443.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 289536..289760 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5443.t1.exon1Ggra5443.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 288882..289397 +
Ggra5443.t1.exon2Ggra5443.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 289536..289760 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5443.t1.intron1Ggra5443.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 289398..289535 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5443.t1.stop1Ggra5443.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 289758..289760 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5443.t1 ID=Ggra5443.t1|Name=Ggra5443.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MRALFVPPCDLRANASAAATMAWTCSAASNAALVDNLVRKRLLTSVRAEN
AMRAVDRRLFVPPSADAYMDSPQPLPCSATISAPHMHAMALQLLEPHLGQ
GASALDVGAGSGYFAALMAVLVGSNGCVVGVEHAAPLTELANANLAAFRR
DAVPAAPVIMRTADGRTGAPDKAPFAAIHVGAASPTIPQPLLDQLANNGA
MIIPVGAEYGPQHLMLVEKDQHGQVRTSSVCGVRYVPLCDLDHQLQ*
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spliced messenger RNA

>Ggra5443.t1 ID=Ggra5443.t1|Name=Ggra5443.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000842_pilon:288882..289760+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCGTTGTTCGTGCCGCCGTGTGATCTCCGCGCCAACGCGAGCGC
CGCCGCCACCATGGCCTGGACGTGCTCGGCCGCCTCCAATGCAGCGCTGG
TGGACAACCTGGTGCGCAAGCGGCTGCTCACGTCGGTGCGCGCCGAGAAC
GCCATGCGCGCCGTGGACCGTCGGCTGTTCGTgccgccgtccgccgacgc
gtacatggactcgccgcagccgctgccgtgctccgccaccatctccgcgc
cgcACATGCACGCCATGGCGCTGCAGTTGTTGGAGCCGCATCTGGGCCAA
GGCGCCAGCGCGCTCGATGTGGGTGCCGGCAGCGGCTATTTTGCCGCTCT
CATGGCTGTACTCGTTGGCTCCAACGGGTGCGTGGTCGGCGTGGAGCACG
CTGCGCCGCTTACCGAGCTGGCTAACGCTAATCTGGCCGCGTTTCGACGC
GACGCTGTGCCCGCCGCTCCTGTCATCATGCGCACCGCTGACGGTCGTAC
TGGAGCTCCCGATAAGGCGCCATTCGCCGCCATTCACGTTGGCGCCGCAT
CTCCCACCATCCCCCAGCCGCTTCTGGATCAATTGGCCAACAACGGCGCC
ATGATCATACCTGTGGGCGCGGAATACGGCCCGCAGCACCTGATGCTGGT
GGAGAAAGATCAACATGGGCAGGTGCGAACGTCCTCTGTGTGCGGCGTTC
GATACGTTCCGCTGTGCGACTTAGATCACCAGTTGCAATGA
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protein sequence of Ggra5443.t1

>Ggra5443.t1 ID=Ggra5443.t1|Name=Ggra5443.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MRALFVPPCDLRANASAAATMAWTCSAASNAALVDNLVRKRLLTSVRAEN
AMRAVDRRLFVPPSADAYMDSPQPLPCSATISAPHMHAMALQLLEPHLGQ
GASALDVGAGSGYFAALMAVLVGSNGCVVGVEHAAPLTELANANLAAFRR
DAVPAAPVIMRTADGRTGAPDKAPFAAIHVGAASPTIPQPLLDQLANNGA
MIIPVGAEYGPQHLMLVEKDQHGQVRTSSVCGVRYVPLCDLDHQLQ*
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mRNA from alignment at tig00000842_pilon:288882..289760+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5443.t1 ID=Ggra5443.t1|Name=Ggra5443.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000842_pilon:288882..289760+ (Gracilaria gracilis GNS1m male)
ATGCGCGCGTTGTTCGTGCCGCCGTGTGATCTCCGCGCCAACGCGAGCGC
CGCCGCCACCATGGCCTGGACGTGCTCGGCCGCCTCCAATGCAGCGCTGG
TGGACAACCTGGTGCGCAAGCGGCTGCTCACGTCGGTGCGCGCCGAGAAC
GCCATGCGCGCCGTGGACCGTCGGCTGTTCGTgccgccgtccgccgacgc
gtacatggactcgccgcagccgctgccgtgctccgccaccatctccgcgc
cgcACATGCACGCCATGGCGCTGCAGTTGTTGGAGCCGCATCTGGGCCAA
GGCGCCAGCGCGCTCGATGTGGGTGCCGGCAGCGGCTATTTTGCCGCTCT
CATGGCTGTACTCGTTGGCTCCAACGGGTGCGTGGTCGGCGTGGAGCACG
CTGCGCCGCTTACCGAGCTGGCTAACGCTAATCTGGCCGCGTTTCGACGC
GACGCTGTGCCCGCCGCTCCTGTCATCATGCGCACCGCTGACGGTCGTAC
TGGAGCTCCCGATAAGGTACGTActctctctctctctctctctctctctc
tcACACAGACATACACACTCTCTTTCTTCTCTATGCTCTGTTGCTCTATT
TTCTGCGTGCTAACCCATTCCATGTGACGTGTGTCGCGCTCCACCTCTAA
ACAGGCGCCATTCGCCGCCATTCACGTTGGCGCCGCATCTCCCACCATCC
CCCAGCCGCTTCTGGATCAATTGGCCAACAACGGCGCCATGATCATACCT
GTGGGCGCGGAATACGGCCCGCAGCACCTGATGCTGGTGGAGAAAGATCA
ACATGGGCAGGTGCGAACGTCCTCTGTGTGCGGCGTTCGATACGTTCCGC
TGTGCGACTTAGATCACCAGTTGCAATGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:288882..289760+

>Ggra5443.t1 ID=Ggra5443.t1|Name=Ggra5443.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000842_pilon:288882..289760+ (Gracilaria gracilis GNS1m male)
ATGCGCGCGTTGTTCGTGCCGCCGTGTGATCTCCGCGCCAACGCGAGCGC
CGCCGCCACCATGGCCTGGACGTGCTCGGCCGCCTCCAATGCAGCGCTGG
TGGACAACCTGGTGCGCAAGCGGCTGCTCACGTCGGTGCGCGCCGAGAAC
GCCATGCGCGCCGTGGACCGTCGGCTGTTCGTgccgccgtccgccgacgc
gtacatggactcgccgcagccgctgccgtgctccgccaccatctccgcgc
cgcACATGCACGCCATGGCGCTGCAGTTGTTGGAGCCGCATCTGGGCCAA
GGCGCCAGCGCGCTCGATGTGGGTGCCGGCAGCGGCTATTTTGCCGCTCT
CATGGCTGTACTCGTTGGCTCCAACGGGTGCGTGGTCGGCGTGGAGCACG
CTGCGCCGCTTACCGAGCTGGCTAACGCTAATCTGGCCGCGTTTCGACGC
GACGCTGTGCCCGCCGCTCCTGTCATCATGCGCACCGCTGACGGTCGTAC
TGGAGCTCCCGATAAGGCGCCATTCGCCGCCATTCACGTTGGCGCCGCAT
CTCCCACCATCCCCCAGCCGCTTCTGGATCAATTGGCCAACAACGGCGCC
ATGATCATACCTGTGGGCGCGGAATACGGCCCGCAGCACCTGATGCTGGT
GGAGAAAGATCAACATGGGCAGGTGCGAACGTCCTCTGTGTGCGGCGTTC
GATACGTTCCGCTGTGCGACTTAGATCACCAGTTGCAATGA
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