Ggra5441.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5441.t1
Unique Name	Ggra5441.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:284725..286362 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708251.1
PFAMs	Trp_Tyr_perm
Max annot lvl	2759\|Eukaryota
Evalue	2.02e-43
EggNOG OGs	2C3E9@1\|root,2RZCA@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5441	Ggra5441	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 284725..286362 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5441.t1.stop1	Ggra5441.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 284725..284727 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5441.t1.CDS1	Ggra5441.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 284725..286362 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5441.t1.exon1	Ggra5441.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 284725..286362 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5441.t1.start1	Ggra5441.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 286360..286362 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5441.t1	Ggra5441.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 284725..286362 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:284725..286362-
coding sequence from alignment at tig00000842_pilon:284725..286362-

mRNA sequence

>Ggra5441.t1 ID=Ggra5441.t1|Name=Ggra5441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp
MTATHQISATAPDVPNSPPPPQLRPQHEHSGAVQQEDKPNMREQLYREWR
VLPVACLTSIATVIGSGILALPVTLYHTAVPVFLILFTITLLAQIAVIYV
VIELIQRAREATTHIQQPLDFEDSEQPPSTTEGEPSSSYDSISQPPKPAE
ISLFTLAHLYLSSRFLRYVYYFSTILCFISMLVSYGLAGPQAVWQLMTAG
PSQSHPPPFVFASYWALGTIAVVFFVDQLLGVFGSFTVLKGSLFVGVVVI
VAALPAGARVSGLEELMSDFSGWKHSATPFLMACVALGGLANTLPVTYRL
LPHRPTPGQVRRYRASILLAAVLCYLLNVGWVLAVLQVVPRDDPTGGPSM
TNAYLKGQISTVPLIDALHHGEAVKGDVLRAIEIIVELFILVSTGVSFFV
TAAGMKSFVDGGIHIVNTGVESAWKKRTTTVAAYVFSFGFVLTIILANPN
GFIAVLTRFSSFTVNLQAGLMLFIMYLTARTMRKGLSSIEEGKGSAEGIG
SPSIPCEMSPAFGTTITVFGIIFFSVACLLASVGPFLGIRLSARE*

spliced messenger RNA

>Ggra5441.t1 ID=Ggra5441.t1|Name=Ggra5441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000842_pilon:284725..286362- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCAACACATCAAATAAGCGCAACCGCGCCAGACGTGCCCAACTC
ACCTCCTCCCCCTCAGCTTCGGCCGCAGCACGAACACTCCGGCGCCGTAC
AGCAGGAGGACAAGCCCAACATGAGGGAGCAGCTTTATCGTGAGTGGCGC
GTGCTTCCCGTCGCATGCTTGACTTCCATTGCAACCGTAATAGGATCCGG
CATTCTTGCCCTGCCTGTCACTCTTTATCACACTGCTGTACCCGTCTTCC
TTATTCTATTCACCATCACTTTACTTGCTCAAATTGCTGTCATCTACGTC
GTCATTGAATTAATCCAGCGCGCACGCGAGGCCACCACCCACATTCAACA
ACCGCTTGACTTTGAAGATTCGGAACAACCCCCCTCAACAACTGAAGGCG
AGCCTTCTTCCAGCTATGACAGTATTTCTCAGCCTCCTAAACCCGCCGAA
ATCTCCCTCTTCACTCTTGCTCATCTTTACTTAAGCTCGCGTTTCTTACG
TTATGTGTACTACTTTTCAACTATACTTTGCTTCATTTCCATGTTGGTTT
CCTACGGACTGGCCGGTCCTCAAGCTGTCTGGCAGCTCATGACGGCCGGT
CCCTCGCAATCCCATCCGCCGCCCTTTGTGTTCGCGTCGTACTGGGCTCT
AGGCACGATTGCCGTCGTCTTTTTCGTCGATCAACTCTTGGGCGTCTTCG
GCTCCTTCACCGTTCTCAAGGGATCTTTGTTCGTCGGCGTCGTTGTCATT
GTCGCCGCTCTACCCGCCGGCGCTCGCGTCAGTGGACTGGAGGAGCTCAT
GTCCGATTTTTCTGGTTGGAAACACTCCGCCACTCCCTTTCTCATGGCAT
GTGTTGCTCTGGGTGGGTTAGCAAACACCTTGCCGGTCACTTATCGTCTC
TTGCCACACAGGCCCACTCCCGGACAAGTTCGGCGTTACCGCGCTTCCAT
TTTGCTCGCAGCTGTGCTGTGTTACCTGCTCAACGTTGGGTGGGTACTGG
CTGTTCTCCAAGTTGTACCCCGCGACGATCCGACGGGTGGTCCAAGTATG
ACAAACGCTTACCTCAAAGGCCAAATATCTACGGTACCGCTCATTGACGC
GTTGCACCATGGGGAAGCTGTGAAAGGAGATGTTTTGAGAGCTATTGAGA
TTATCGTGGAGCTTTTCATTCTAGTATCGACTGGAGTCAGTTTCTTTGTC
ACAGCGGCGGGAATGAAGAGTTTTGTAGATGGAGGAATACATATTGTGAA
CACTGGAGTAGAAAGCGCTTGGAAGAAACGCACAACGACCGTTGCTGCGT
ATGTTTTTTCGTTTGGTTTCGTCCTAACAATCATCCTTGCGAATCCCAAT
GGATTCATTGCTGTTCTTACCAGATTCTCATCCTTCACCGTAAACCTGCA
GGCTGGATTGATGTTGTTCATTATGTACTTGACAGCAAGAACAATGAGAA
AGGGTTTGAGTAGCATTGAGGAAGGCAAGGGTTCGGCAGAAGGCATCGGC
AGTCCTTCTATCCCGTGTGAGATGTCTCCGGCGTTTGGAACAACGATCAC
GGTGTTCGGCATTATCTTCTTCTCCGTAGCTTGCTTATTGGCTTCTGTGG
GGCCATTCTTGGGAATACGTTTAAGCGCGAGAGAGTAG

protein sequence of Ggra5441.t1

>Ggra5441.t1 ID=Ggra5441.t1|Name=Ggra5441.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MTATHQISATAPDVPNSPPPPQLRPQHEHSGAVQQEDKPNMREQLYREWR
VLPVACLTSIATVIGSGILALPVTLYHTAVPVFLILFTITLLAQIAVIYV
VIELIQRAREATTHIQQPLDFEDSEQPPSTTEGEPSSSYDSISQPPKPAE
ISLFTLAHLYLSSRFLRYVYYFSTILCFISMLVSYGLAGPQAVWQLMTAG
PSQSHPPPFVFASYWALGTIAVVFFVDQLLGVFGSFTVLKGSLFVGVVVI
VAALPAGARVSGLEELMSDFSGWKHSATPFLMACVALGGLANTLPVTYRL
LPHRPTPGQVRRYRASILLAAVLCYLLNVGWVLAVLQVVPRDDPTGGPSM
TNAYLKGQISTVPLIDALHHGEAVKGDVLRAIEIIVELFILVSTGVSFFV
TAAGMKSFVDGGIHIVNTGVESAWKKRTTTVAAYVFSFGFVLTIILANPN
GFIAVLTRFSSFTVNLQAGLMLFIMYLTARTMRKGLSSIEEGKGSAEGIG
SPSIPCEMSPAFGTTITVFGIIFFSVACLLASVGPFLGIRLSARE*

mRNA from alignment at tig00000842_pilon:284725..286362-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5441.t1 ID=Ggra5441.t1|Name=Ggra5441.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000842_pilon:284725..286362- (Gracilaria gracilis GNS1m male)
ATGACTGCAACACATCAAATAAGCGCAACCGCGCCAGACGTGCCCAACTC
ACCTCCTCCCCCTCAGCTTCGGCCGCAGCACGAACACTCCGGCGCCGTAC
AGCAGGAGGACAAGCCCAACATGAGGGAGCAGCTTTATCGTGAGTGGCGC
GTGCTTCCCGTCGCATGCTTGACTTCCATTGCAACCGTAATAGGATCCGG
CATTCTTGCCCTGCCTGTCACTCTTTATCACACTGCTGTACCCGTCTTCC
TTATTCTATTCACCATCACTTTACTTGCTCAAATTGCTGTCATCTACGTC
GTCATTGAATTAATCCAGCGCGCACGCGAGGCCACCACCCACATTCAACA
ACCGCTTGACTTTGAAGATTCGGAACAACCCCCCTCAACAACTGAAGGCG
AGCCTTCTTCCAGCTATGACAGTATTTCTCAGCCTCCTAAACCCGCCGAA
ATCTCCCTCTTCACTCTTGCTCATCTTTACTTAAGCTCGCGTTTCTTACG
TTATGTGTACTACTTTTCAACTATACTTTGCTTCATTTCCATGTTGGTTT
CCTACGGACTGGCCGGTCCTCAAGCTGTCTGGCAGCTCATGACGGCCGGT
CCCTCGCAATCCCATCCGCCGCCCTTTGTGTTCGCGTCGTACTGGGCTCT
AGGCACGATTGCCGTCGTCTTTTTCGTCGATCAACTCTTGGGCGTCTTCG
GCTCCTTCACCGTTCTCAAGGGATCTTTGTTCGTCGGCGTCGTTGTCATT
GTCGCCGCTCTACCCGCCGGCGCTCGCGTCAGTGGACTGGAGGAGCTCAT
GTCCGATTTTTCTGGTTGGAAACACTCCGCCACTCCCTTTCTCATGGCAT
GTGTTGCTCTGGGTGGGTTAGCAAACACCTTGCCGGTCACTTATCGTCTC
TTGCCACACAGGCCCACTCCCGGACAAGTTCGGCGTTACCGCGCTTCCAT
TTTGCTCGCAGCTGTGCTGTGTTACCTGCTCAACGTTGGGTGGGTACTGG
CTGTTCTCCAAGTTGTACCCCGCGACGATCCGACGGGTGGTCCAAGTATG
ACAAACGCTTACCTCAAAGGCCAAATATCTACGGTACCGCTCATTGACGC
GTTGCACCATGGGGAAGCTGTGAAAGGAGATGTTTTGAGAGCTATTGAGA
TTATCGTGGAGCTTTTCATTCTAGTATCGACTGGAGTCAGTTTCTTTGTC
ACAGCGGCGGGAATGAAGAGTTTTGTAGATGGAGGAATACATATTGTGAA
CACTGGAGTAGAAAGCGCTTGGAAGAAACGCACAACGACCGTTGCTGCGT
ATGTTTTTTCGTTTGGTTTCGTCCTAACAATCATCCTTGCGAATCCCAAT
GGATTCATTGCTGTTCTTACCAGATTCTCATCCTTCACCGTAAACCTGCA
GGCTGGATTGATGTTGTTCATTATGTACTTGACAGCAAGAACAATGAGAA
AGGGTTTGAGTAGCATTGAGGAAGGCAAGGGTTCGGCAGAAGGCATCGGC
AGTCCTTCTATCCCGTGTGAGATGTCTCCGGCGTTTGGAACAACGATCAC
GGTGTTCGGCATTATCTTCTTCTCCGTAGCTTGCTTATTGGCTTCTGTGG
GGCCATTCTTGGGAATACGTTTAAGCGCGAGAGAGTAG

Coding sequence (CDS) from alignment at tig00000842_pilon:284725..286362-

>Ggra5441.t1 ID=Ggra5441.t1|Name=Ggra5441.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00000842_pilon:284725..286362- (Gracilaria gracilis GNS1m male)
ATGACTGCAACACATCAAATAAGCGCAACCGCGCCAGACGTGCCCAACTC
ACCTCCTCCCCCTCAGCTTCGGCCGCAGCACGAACACTCCGGCGCCGTAC
AGCAGGAGGACAAGCCCAACATGAGGGAGCAGCTTTATCGTGAGTGGCGC
GTGCTTCCCGTCGCATGCTTGACTTCCATTGCAACCGTAATAGGATCCGG
CATTCTTGCCCTGCCTGTCACTCTTTATCACACTGCTGTACCCGTCTTCC
TTATTCTATTCACCATCACTTTACTTGCTCAAATTGCTGTCATCTACGTC
GTCATTGAATTAATCCAGCGCGCACGCGAGGCCACCACCCACATTCAACA
ACCGCTTGACTTTGAAGATTCGGAACAACCCCCCTCAACAACTGAAGGCG
AGCCTTCTTCCAGCTATGACAGTATTTCTCAGCCTCCTAAACCCGCCGAA
ATCTCCCTCTTCACTCTTGCTCATCTTTACTTAAGCTCGCGTTTCTTACG
TTATGTGTACTACTTTTCAACTATACTTTGCTTCATTTCCATGTTGGTTT
CCTACGGACTGGCCGGTCCTCAAGCTGTCTGGCAGCTCATGACGGCCGGT
CCCTCGCAATCCCATCCGCCGCCCTTTGTGTTCGCGTCGTACTGGGCTCT
AGGCACGATTGCCGTCGTCTTTTTCGTCGATCAACTCTTGGGCGTCTTCG
GCTCCTTCACCGTTCTCAAGGGATCTTTGTTCGTCGGCGTCGTTGTCATT
GTCGCCGCTCTACCCGCCGGCGCTCGCGTCAGTGGACTGGAGGAGCTCAT
GTCCGATTTTTCTGGTTGGAAACACTCCGCCACTCCCTTTCTCATGGCAT
GTGTTGCTCTGGGTGGGTTAGCAAACACCTTGCCGGTCACTTATCGTCTC
TTGCCACACAGGCCCACTCCCGGACAAGTTCGGCGTTACCGCGCTTCCAT
TTTGCTCGCAGCTGTGCTGTGTTACCTGCTCAACGTTGGGTGGGTACTGG
CTGTTCTCCAAGTTGTACCCCGCGACGATCCGACGGGTGGTCCAAGTATG
ACAAACGCTTACCTCAAAGGCCAAATATCTACGGTACCGCTCATTGACGC
GTTGCACCATGGGGAAGCTGTGAAAGGAGATGTTTTGAGAGCTATTGAGA
TTATCGTGGAGCTTTTCATTCTAGTATCGACTGGAGTCAGTTTCTTTGTC
ACAGCGGCGGGAATGAAGAGTTTTGTAGATGGAGGAATACATATTGTGAA
CACTGGAGTAGAAAGCGCTTGGAAGAAACGCACAACGACCGTTGCTGCGT
ATGTTTTTTCGTTTGGTTTCGTCCTAACAATCATCCTTGCGAATCCCAAT
GGATTCATTGCTGTTCTTACCAGATTCTCATCCTTCACCGTAAACCTGCA
GGCTGGATTGATGTTGTTCATTATGTACTTGACAGCAAGAACAATGAGAA
AGGGTTTGAGTAGCATTGAGGAAGGCAAGGGTTCGGCAGAAGGCATCGGC
AGTCCTTCTATCCCGTGTGAGATGTCTCCGGCGTTTGGAACAACGATCAC
GGTGTTCGGCATTATCTTCTTCTCCGTAGCTTGCTTATTGGCTTCTGTGG
GGCCATTCTTGGGAATACGTTTAAGCGCGAGAGAGTAG