Ggra5433.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5433.t1
Unique NameGgra5433.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:112267..113424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5433Ggra5433Gracilaria gracilis GNS1m malegenetig00000842_pilon 112267..113424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5433.t1Ggra5433.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 112267..113424 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5433.t1.stop1Ggra5433.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 112267..112269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5433.t1.CDS1Ggra5433.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 112267..112479 -
Ggra5433.t1.CDS2Ggra5433.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 112750..113424 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5433.t1.exon1Ggra5433.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 112267..112479 -
Ggra5433.t1.exon2Ggra5433.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 112750..113424 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5433.t1.intron1Ggra5433.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 112480..112749 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5433.t1.start1Ggra5433.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 113422..113424 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5433.t1 ID=Ggra5433.t1|Name=Ggra5433.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MRRFSTVGDNLKKKKLTNVAEEVYRREVVAVLETVSSRAKKNREEGCVAS
EEQAVFNSLKRQISEVAEEAKRAREALHIANKEKCEVEYECVEHEEKRRT
LFWLLKDARAENRELRASNSTLMDTISKLEADVERLQVEKSNDDVEKLRA
LHKAEMAELVATQTSLHCKRLDEQLKNVESTSSLVHKHVEELEKALEETT
TFLAHTVNNSETPRSHWLEGQVESLDVETETRDIRDAEVNSTRSNGRNEL
GASSDNDCNPQPSRSANAETAGVKKIRGGRRGQLQDSDPQAVEYI*
back to top

spliced messenger RNA

>Ggra5433.t1 ID=Ggra5433.t1|Name=Ggra5433.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000842_pilon:112267..113424- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGTTTTTCGACTGTGGGAGATAACCTCAAGAAGAAGAAGTTGAC
AAATGTGGCGGAAGAAGTATACAGGCGAGAAGTTGTCGCCGTTTTGGAAA
CTGTTTCTTCGCGCGCCAAGAAGAATAGGGAGGAGGGCTGCGTTGCCAGT
GAAGAACAAGCCGTCTTCAACTCCTTGAAACGCCAAATTAGCGAGGTGGC
GGAGGAGGCCAAGAGAGCGAGAGAAGCCTTACACATTGCGAATAAGGAAA
AGTGTGAGGTGGAATACGAATGCGTGGAGCATGAAGAGAAACGCAGGACC
CTGTTCTGGTTGTTAAAAGATGCTAGAGCAGAAAACAGGGAGCTGCGCGC
GAGTAACAGCACTCTTATGGACACCATCAGCAAACTAGAGGCTGATGTTG
AACGACTCCAGGTGGAAAAGAGCAACGATGACGTGGAAAAGCTTCGGGCG
CTACACAAAGCGGAAATGGCTGAGTTGGTAGCGACGCAAACTTCACTGCA
TTGCAAACGATTGGATGAGCAGCTGAAGAATGTGGAAAGTACTTCAAGTC
TGGTCCACAAGCATGTTGAGGAACTTGAGAAGGCTTTAGAAGAAACGACA
ACTTTTCTGGCCCATACCGTCAACAACTCGGAAACACCTAGGTCCCACTG
GTTAGAAGGTCAAGTTGAGTCACTAGACGTTGAGACTGAAACTCGAGATA
TCCGGGATGCAGAGGTCAATAGCACCCGCAGCAACGGGCGCAACGAACTT
GGAGCTTCATCTGACAACGACTGCAATCCTCAACCCTCAAGGTCTGCAAA
CGCGGAGACGGCGGGCGTCAAGAAAATCCGAGGCGGGCGTCGCGGCCAGT
TACAAGACAGCGATCCTCAAGCAGTGGAGTACATATAG
back to top

protein sequence of Ggra5433.t1

>Ggra5433.t1 ID=Ggra5433.t1|Name=Ggra5433.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MRRFSTVGDNLKKKKLTNVAEEVYRREVVAVLETVSSRAKKNREEGCVAS
EEQAVFNSLKRQISEVAEEAKRAREALHIANKEKCEVEYECVEHEEKRRT
LFWLLKDARAENRELRASNSTLMDTISKLEADVERLQVEKSNDDVEKLRA
LHKAEMAELVATQTSLHCKRLDEQLKNVESTSSLVHKHVEELEKALEETT
TFLAHTVNNSETPRSHWLEGQVESLDVETETRDIRDAEVNSTRSNGRNEL
GASSDNDCNPQPSRSANAETAGVKKIRGGRRGQLQDSDPQAVEYI*
back to top

mRNA from alignment at tig00000842_pilon:112267..113424-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5433.t1 ID=Ggra5433.t1|Name=Ggra5433.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00000842_pilon:112267..113424- (Gracilaria gracilis GNS1m male)
ATGAGGCGTTTTTCGACTGTGGGAGATAACCTCAAGAAGAAGAAGTTGAC
AAATGTGGCGGAAGAAGTATACAGGCGAGAAGTTGTCGCCGTTTTGGAAA
CTGTTTCTTCGCGCGCCAAGAAGAATAGGGAGGAGGGCTGCGTTGCCAGT
GAAGAACAAGCCGTCTTCAACTCCTTGAAACGCCAAATTAGCGAGGTGGC
GGAGGAGGCCAAGAGAGCGAGAGAAGCCTTACACATTGCGAATAAGGAAA
AGTGTGAGGTGGAATACGAATGCGTGGAGCATGAAGAGAAACGCAGGACC
CTGTTCTGGTTGTTAAAAGATGCTAGAGCAGAAAACAGGGAGCTGCGCGC
GAGTAACAGCACTCTTATGGACACCATCAGCAAACTAGAGGCTGATGTTG
AACGACTCCAGGTGGAAAAGAGCAACGATGACGTGGAAAAGCTTCGGGCG
CTACACAAAGCGGAAATGGCTGAGTTGGTAGCGACGCAAACTTCACTGCA
TTGCAAACGATTGGATGAGCAGCTGAAGAATGTGGAAAGTACTTCAAGTC
TGGTCCACAAGCATGTTGAGGAACTTGAGAAGGCTTTAGAAGAAACGACA
ACTTTTCTGGCCCATACCGTCAACAACTCGGAAACACCTAGGTCCCACTG
GTTAGAAGGTCAAGTTGAGTCACTAGTACGCAAGAGTACCAAGCTTTTGG
AGCGTTTCAAGGCCTCGCTCTCGCATGACAGGAATGAAGAAGACAGAAGT
GAAGGAAGCAATGAAGAATGGGGAGACGTGAACCAAGCGGGAATAATAAA
CCGTGAAGAGCCATCAGTTCTACTAAATGGGAAAAGAGGGTCTCTAGGCT
TGCTATTCAACAAGAACCATAGAAAACGAGATCAGTCCCAGCCTGGATAG
CTCCGGAGATTAACTAACCGCTTACGACGTGACCGAAGCGGACAGGACGT
TGAGACTGAAACTCGAGATATCCGGGATGCAGAGGTCAATAGCACCCGCA
GCAACGGGCGCAACGAACTTGGAGCTTCATCTGACAACGACTGCAATCCT
CAACCCTCAAGGTCTGCAAACGCGGAGACGGCGGGCGTCAAGAAAATCCG
AGGCGGGCGTCGCGGCCAGTTACAAGACAGCGATCCTCAAGCAGTGGAGT
ACATATAG
back to top

Coding sequence (CDS) from alignment at tig00000842_pilon:112267..113424-

>Ggra5433.t1 ID=Ggra5433.t1|Name=Ggra5433.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000842_pilon:112267..113424- (Gracilaria gracilis GNS1m male)
ATGAGGCGTTTTTCGACTGTGGGAGATAACCTCAAGAAGAAGAAGTTGAC
AAATGTGGCGGAAGAAGTATACAGGCGAGAAGTTGTCGCCGTTTTGGAAA
CTGTTTCTTCGCGCGCCAAGAAGAATAGGGAGGAGGGCTGCGTTGCCAGT
GAAGAACAAGCCGTCTTCAACTCCTTGAAACGCCAAATTAGCGAGGTGGC
GGAGGAGGCCAAGAGAGCGAGAGAAGCCTTACACATTGCGAATAAGGAAA
AGTGTGAGGTGGAATACGAATGCGTGGAGCATGAAGAGAAACGCAGGACC
CTGTTCTGGTTGTTAAAAGATGCTAGAGCAGAAAACAGGGAGCTGCGCGC
GAGTAACAGCACTCTTATGGACACCATCAGCAAACTAGAGGCTGATGTTG
AACGACTCCAGGTGGAAAAGAGCAACGATGACGTGGAAAAGCTTCGGGCG
CTACACAAAGCGGAAATGGCTGAGTTGGTAGCGACGCAAACTTCACTGCA
TTGCAAACGATTGGATGAGCAGCTGAAGAATGTGGAAAGTACTTCAAGTC
TGGTCCACAAGCATGTTGAGGAACTTGAGAAGGCTTTAGAAGAAACGACA
ACTTTTCTGGCCCATACCGTCAACAACTCGGAAACACCTAGGTCCCACTG
GTTAGAAGGTCAAGTTGAGTCACTAGACGTTGAGACTGAAACTCGAGATA
TCCGGGATGCAGAGGTCAATAGCACCCGCAGCAACGGGCGCAACGAACTT
GGAGCTTCATCTGACAACGACTGCAATCCTCAACCCTCAAGGTCTGCAAA
CGCGGAGACGGCGGGCGTCAAGAAAATCCGAGGCGGGCGTCGCGGCCAGT
TACAAGACAGCGATCCTCAAGCAGTGGAGTACATATAG
back to top