Ggra5431.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5431.t1
Unique NameGgra5431.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:105358..106886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5431Ggra5431Gracilaria gracilis GNS1m malegenetig00000842_pilon 105358..106886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5431.t1Ggra5431.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 105358..106886 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5431.t1.start1Ggra5431.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 105358..105360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5431.t1.CDS1Ggra5431.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 105358..106754 +
Ggra5431.t1.CDS2Ggra5431.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 106847..106886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5431.t1.exon1Ggra5431.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 105358..106754 +
Ggra5431.t1.exon2Ggra5431.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 106847..106886 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5431.t1.intron1Ggra5431.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 106755..106846 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5431.t1.stop1Ggra5431.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 106884..106886 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5431.t1 ID=Ggra5431.t1|Name=Ggra5431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=479bp
MVNRKRVIPESDSDSDANPDDVQSLFFDEEPEEENLPLTQLQSPCARYNP
QARLNPSVGSNDEEVPDLGMARSRLQRILGAQRKDLPTQTAKKVLIYGKK
RKVIPVKANKVAMSREESWTQMIGDCLAVDRSFFHSAEGRMEDRSVKQRG
SVVYNGLKLSINNCADIETVYDIRFRSKVVFSGKKSLGFDGVRCAAGQFM
RFTIALGLVDRNDGHKQNVLFRALADCEAVQCFINHFTLTASPYTVSGKC
NNLLSIIHVGKIRMGDMDGIQSQLEAVGEYLRSAAAASKRAGRRKSRRQR
LIDISTNNHNLLFDADLRKALSIARHKCQDIMNTYRIDEAREKGRFARRL
EKCEDLRHKWCLNVLAAVVFSCGGQRPQAIATLQLPTDAEIDRVETTGFG
DFFSLRCDSDKTERDANFPLVLFPVSMKPLIEFHRKVMRSYLRDKFNFID
DGVDIRLLLNSKDGTVEFCYVDDACVSA*
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spliced messenger RNA

>Ggra5431.t1 ID=Ggra5431.t1|Name=Ggra5431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000842_pilon:105358..106886+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAACCGCAAAAGGGTTATCCCGGAGTCGGACTCGGATTCGGATGC
CAACCCTGATGATGTTCAATCTTTGTTCTTCGATGAGGAGCCTGAAGAGG
AAAACTTGCCTCTCACTCAACTTCAGTCCCCGTGCGCGAGATATAATCCA
CAAGCCCGCTTGAATCCATCTGTGGGTTCTAACGATGAAGAGGTTCCAGA
TCTTGGTATGGCGCGGTCGCGATTGCAGAGAATCCTTGGCGCTCAAAGAA
AAGATTTGCCGACACAAACGGCGAAGAAGGTATTGATCTACGGCAAGAAA
CGAAAGGTTATCCCCGTTAAGGCAAACAAGGTAGCAATGTCTAGAGAGGA
GTCGTGGACACAGATGATCGGCGATTGTTTGGCGGTTGACAGGAGTTTCT
TCCACAGTGCCGAGGGAAGAATGGAAGATCGGTCTGTGAAGCAGCGTGGA
AGTGTCGTGTACAATGGACTGAAGTTGTCTATTAATAATTGCGCTGATAT
CGAGACCGTCTACGACATACGGTTTCGTTCTAAAGTCGTCTTCAGTGGAA
AGAAGTCATTAGGGTTCGATGGTGTCCGTTGTGCTGCCGGGCAATTCATG
CGGTTTACAATAGCGCTTGGTCTCGTTGACCGAAACGACGGGCATAAGCA
AAATGTCTTGTTCCGCGCACTTGCCGATTGTGAAGCCGTGCAGTGCTTCA
TCAATCATTTCACCCTCACCGCATCACCGTATACTGTATCAGGCAAGTGC
AATAACTTGCTTAGTATTATACATGTTGGGAAGATACGTATGGGCGATAT
GGATGGGATTCAGTCACAACTTGAGGCAGTGGGCGAATATCTTCGTAGTG
CTGCTGCTGCTTCGAAGCGCGCAGGCCGGCGCAAAAGTCGCCGCCAACGC
TTGATTGATATATCAACCAACAACCACAATCTTCTGTTTGATGCGGATTT
AAGGAAGGCATTATCAATTGCCCGTCACAAATGTCAAGATATAATGAACA
CCTACCGAATCGATGAGGCCCGTGAGAAAGGAAGGTTTGCTCGCCGGCTC
GAGAAATGCGAAGATCTACGACACAAGTGGTGTCTAAACGTTCTGGCGGC
GGTCGTTTTTTCTTGTGGTGGACAAAGACCGCAAGCTATTGCAACCTTGC
AGCTCCCGACGGACGCGGAAATTGACCGTGTTGAGACAACAGGCTTTGGA
GACTTTTTTAGTTTACGTTGCGATTCGGATAAGACGGAACGAGATGCGAA
TTTTCCGCTAGTCTTGTTCCCCGTTTCGATGAAGCCATTGATTGAATTTC
ATCGGAAGGTGATGCGGTCTTATCTGCGAGACAAGTTTAATTTCATCGAT
GATGGGGTAGACATCAGACTACTATTGAACTCCAAAGATGGAACGGTCGA
GTTTTGCTACGTCGATGATGCATGCGTTTCGGCATAA
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protein sequence of Ggra5431.t1

>Ggra5431.t1 ID=Ggra5431.t1|Name=Ggra5431.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=479bp
MVNRKRVIPESDSDSDANPDDVQSLFFDEEPEEENLPLTQLQSPCARYNP
QARLNPSVGSNDEEVPDLGMARSRLQRILGAQRKDLPTQTAKKVLIYGKK
RKVIPVKANKVAMSREESWTQMIGDCLAVDRSFFHSAEGRMEDRSVKQRG
SVVYNGLKLSINNCADIETVYDIRFRSKVVFSGKKSLGFDGVRCAAGQFM
RFTIALGLVDRNDGHKQNVLFRALADCEAVQCFINHFTLTASPYTVSGKC
NNLLSIIHVGKIRMGDMDGIQSQLEAVGEYLRSAAAASKRAGRRKSRRQR
LIDISTNNHNLLFDADLRKALSIARHKCQDIMNTYRIDEAREKGRFARRL
EKCEDLRHKWCLNVLAAVVFSCGGQRPQAIATLQLPTDAEIDRVETTGFG
DFFSLRCDSDKTERDANFPLVLFPVSMKPLIEFHRKVMRSYLRDKFNFID
DGVDIRLLLNSKDGTVEFCYVDDACVSA*
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mRNA from alignment at tig00000842_pilon:105358..106886+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5431.t1 ID=Ggra5431.t1|Name=Ggra5431.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1529bp|location=Sequence derived from alignment at tig00000842_pilon:105358..106886+ (Gracilaria gracilis GNS1m male)
ATGGTCAACCGCAAAAGGGTTATCCCGGAGTCGGACTCGGATTCGGATGC
CAACCCTGATGATGTTCAATCTTTGTTCTTCGATGAGGAGCCTGAAGAGG
AAAACTTGCCTCTCACTCAACTTCAGTCCCCGTGCGCGAGATATAATCCA
CAAGCCCGCTTGAATCCATCTGTGGGTTCTAACGATGAAGAGGTTCCAGA
TCTTGGTATGGCGCGGTCGCGATTGCAGAGAATCCTTGGCGCTCAAAGAA
AAGATTTGCCGACACAAACGGCGAAGAAGGTATTGATCTACGGCAAGAAA
CGAAAGGTTATCCCCGTTAAGGCAAACAAGGTAGCAATGTCTAGAGAGGA
GTCGTGGACACAGATGATCGGCGATTGTTTGGCGGTTGACAGGAGTTTCT
TCCACAGTGCCGAGGGAAGAATGGAAGATCGGTCTGTGAAGCAGCGTGGA
AGTGTCGTGTACAATGGACTGAAGTTGTCTATTAATAATTGCGCTGATAT
CGAGACCGTCTACGACATACGGTTTCGTTCTAAAGTCGTCTTCAGTGGAA
AGAAGTCATTAGGGTTCGATGGTGTCCGTTGTGCTGCCGGGCAATTCATG
CGGTTTACAATAGCGCTTGGTCTCGTTGACCGAAACGACGGGCATAAGCA
AAATGTCTTGTTCCGCGCACTTGCCGATTGTGAAGCCGTGCAGTGCTTCA
TCAATCATTTCACCCTCACCGCATCACCGTATACTGTATCAGGCAAGTGC
AATAACTTGCTTAGTATTATACATGTTGGGAAGATACGTATGGGCGATAT
GGATGGGATTCAGTCACAACTTGAGGCAGTGGGCGAATATCTTCGTAGTG
CTGCTGCTGCTTCGAAGCGCGCAGGCCGGCGCAAAAGTCGCCGCCAACGC
TTGATTGATATATCAACCAACAACCACAATCTTCTGTTTGATGCGGATTT
AAGGAAGGCATTATCAATTGCCCGTCACAAATGTCAAGATATAATGAACA
CCTACCGAATCGATGAGGCCCGTGAGAAAGGAAGGTTTGCTCGCCGGCTC
GAGAAATGCGAAGATCTACGACACAAGTGGTGTCTAAACGTTCTGGCGGC
GGTCGTTTTTTCTTGTGGTGGACAAAGACCGCAAGCTATTGCAACCTTGC
AGCTCCCGACGGACGCGGAAATTGACCGTGTTGAGACAACAGGCTTTGGA
GACTTTTTTAGTTTACGTTGCGATTCGGATAAGACGGAACGAGATGCGAA
TTTTCCGCTAGTCTTGTTCCCCGTTTCGATGAAGCCATTGATTGAATTTC
ATCGGAAGGTGATGCGGTCTTATCTGCGAGACAAGTTTAATTTCATCGAT
GATGGGGTAGACATCAGACTACTATTGAACTCCAAAGATGGAACGGTGTT
GGAATCTAGGCAAATTACGAACTCGATTCGCAGTTTCATGGTCTACCTTA
ACAAGCGTTATGAATTTGTAACGTGCATGACTGTGCGAGCGAGTTTTGCT
ACGTCGATGATGCATGCGTTTCGGCATAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:105358..106886+

>Ggra5431.t1 ID=Ggra5431.t1|Name=Ggra5431.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00000842_pilon:105358..106886+ (Gracilaria gracilis GNS1m male)
ATGGTCAACCGCAAAAGGGTTATCCCGGAGTCGGACTCGGATTCGGATGC
CAACCCTGATGATGTTCAATCTTTGTTCTTCGATGAGGAGCCTGAAGAGG
AAAACTTGCCTCTCACTCAACTTCAGTCCCCGTGCGCGAGATATAATCCA
CAAGCCCGCTTGAATCCATCTGTGGGTTCTAACGATGAAGAGGTTCCAGA
TCTTGGTATGGCGCGGTCGCGATTGCAGAGAATCCTTGGCGCTCAAAGAA
AAGATTTGCCGACACAAACGGCGAAGAAGGTATTGATCTACGGCAAGAAA
CGAAAGGTTATCCCCGTTAAGGCAAACAAGGTAGCAATGTCTAGAGAGGA
GTCGTGGACACAGATGATCGGCGATTGTTTGGCGGTTGACAGGAGTTTCT
TCCACAGTGCCGAGGGAAGAATGGAAGATCGGTCTGTGAAGCAGCGTGGA
AGTGTCGTGTACAATGGACTGAAGTTGTCTATTAATAATTGCGCTGATAT
CGAGACCGTCTACGACATACGGTTTCGTTCTAAAGTCGTCTTCAGTGGAA
AGAAGTCATTAGGGTTCGATGGTGTCCGTTGTGCTGCCGGGCAATTCATG
CGGTTTACAATAGCGCTTGGTCTCGTTGACCGAAACGACGGGCATAAGCA
AAATGTCTTGTTCCGCGCACTTGCCGATTGTGAAGCCGTGCAGTGCTTCA
TCAATCATTTCACCCTCACCGCATCACCGTATACTGTATCAGGCAAGTGC
AATAACTTGCTTAGTATTATACATGTTGGGAAGATACGTATGGGCGATAT
GGATGGGATTCAGTCACAACTTGAGGCAGTGGGCGAATATCTTCGTAGTG
CTGCTGCTGCTTCGAAGCGCGCAGGCCGGCGCAAAAGTCGCCGCCAACGC
TTGATTGATATATCAACCAACAACCACAATCTTCTGTTTGATGCGGATTT
AAGGAAGGCATTATCAATTGCCCGTCACAAATGTCAAGATATAATGAACA
CCTACCGAATCGATGAGGCCCGTGAGAAAGGAAGGTTTGCTCGCCGGCTC
GAGAAATGCGAAGATCTACGACACAAGTGGTGTCTAAACGTTCTGGCGGC
GGTCGTTTTTTCTTGTGGTGGACAAAGACCGCAAGCTATTGCAACCTTGC
AGCTCCCGACGGACGCGGAAATTGACCGTGTTGAGACAACAGGCTTTGGA
GACTTTTTTAGTTTACGTTGCGATTCGGATAAGACGGAACGAGATGCGAA
TTTTCCGCTAGTCTTGTTCCCCGTTTCGATGAAGCCATTGATTGAATTTC
ATCGGAAGGTGATGCGGTCTTATCTGCGAGACAAGTTTAATTTCATCGAT
GATGGGGTAGACATCAGACTACTATTGAACTCCAAAGATGGAACGGTCGA
GTTTTGCTACGTCGATGATGCATGCGTTTCGGCATAA
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